ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal22l12 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X57408.1|TAPSB0 Wheat PsbO mRNA for 33kDa oxygen evolving protein of photosystem II Length = 1217 Score = 230 bits (116), Expect = 2e-57 Identities = 224/254 (88%), Gaps = 10/254 (3%) Strand = Plus / Plus Query: 1 cgcccaggnatgtcaagnatccagggtgtgtggtacgcgcagctcgngtctaactagnag 60 |||||| | |||||||| |||||||||||||||||||||||||||| |||||||||| || Sbjct: 950 cgcccaaggatgtcaag-atccagggtgtgtggtacgcgcagctcgagtctaactag-ag 1007 Query: 61 catagcagaagtgaagatactc--atcttttgtgcatgcatacgtgggttggtcggtgga 118 || |||||||||||||| || ||||| ||||||||| ||||||||||| |||||||| Sbjct: 1008 cagagcagaagtgaagaagatcctatcttgtgtgcatgcgtacgtgggttgatcggtgga 1067 Query: 119 gaggaaagaatcgaggcaacaa--tgtgtttgtgtgtgtatctagta---taaaaccaga 173 ||||||| |||||||||||||| |||||| |||||||||||||||| |||| |||| Sbjct: 1068 gaggaaacaatcgaggcaacaatgtgtgttggtgtgtgtatctagtaatctaaacccagg 1127 Query: 174 gtgatcggtttatattttagcttctgttatcatttcttgctcaccagctcatgatattga 233 ||| |||||||||||||||||||||||||| |||||| ||| || ||||||||||||| Sbjct: 1128 gtg-tcggtttatattttagcttctgttattgtttcttcctcgcctactcatgatattga 1186 Query: 234 tcccccatgaatgt 247 |||||||||||||| Sbjct: 1187 tcccccatgaatgt 1200
>ref|NM_193698.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1002 Score = 44.1 bits (22), Expect = 0.21 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Plus Query: 2 gcccaggnatgtcaagnatccagggtgtgtggtacgcgcagctcg 46 ||||| | |||||||| ||||| || ||||||||||||||||||| Sbjct: 954 gcccaaggatgtcaag-atccaaggggtgtggtacgcgcagctcg 997
>gb|AC132302.3| Mus musculus BAC clone RP24-279N5 from chromosome 3, complete sequence Length = 157307 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 139 aatgtgtttgtgtgtgtatcta 160 |||||||||||||||||||||| Sbjct: 90679 aatgtgtttgtgtgtgtatcta 90658
>gb|AC156615.7| Mus musculus chromosome 3, clone RP23-1B20, complete sequence Length = 210003 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 139 aatgtgtttgtgtgtgtatcta 160 |||||||||||||||||||||| Sbjct: 171902 aatgtgtttgtgtgtgtatcta 171881
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.21 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Plus Query: 2 gcccaggnatgtcaagnatccagggtgtgtggtacgcgcagctcg 46 ||||| | |||||||| ||||| || ||||||||||||||||||| Sbjct: 17346590 gcccaaggatgtcaag-atccaaggggtgtggtacgcgcagctcg 17346633
>dbj|AP003203.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1080D07 Length = 173856 Score = 44.1 bits (22), Expect = 0.21 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Plus Query: 2 gcccaggnatgtcaagnatccagggtgtgtggtacgcgcagctcg 46 ||||| | |||||||| ||||| || ||||||||||||||||||| Sbjct: 112851 gcccaaggatgtcaag-atccaaggggtgtggtacgcgcagctcg 112894
>dbj|AK119515.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-D11, full insert sequence Length = 1286 Score = 44.1 bits (22), Expect = 0.21 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Plus Query: 2 gcccaggnatgtcaagnatccagggtgtgtggtacgcgcagctcg 46 ||||| | |||||||| ||||| || ||||||||||||||||||| Sbjct: 1019 gcccaaggatgtcaag-atccaaggggtgtggtacgcgcagctcg 1062
>dbj|AK119188.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-G10, full insert sequence Length = 1217 Score = 44.1 bits (22), Expect = 0.21 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Plus Query: 2 gcccaggnatgtcaagnatccagggtgtgtggtacgcgcagctcg 46 ||||| | |||||||| ||||| || ||||||||||||||||||| Sbjct: 1026 gcccaaggatgtcaag-atccaaggggtgtggtacgcgcagctcg 1069
>dbj|AK119163.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-D09, full insert sequence Length = 1293 Score = 44.1 bits (22), Expect = 0.21 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Plus Query: 2 gcccaggnatgtcaagnatccagggtgtgtggtacgcgcagctcg 46 ||||| | |||||||| ||||| || ||||||||||||||||||| Sbjct: 1026 gcccaaggatgtcaag-atccaaggggtgtggtacgcgcagctcg 1069
>dbj|AK104760.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-G12, full insert sequence Length = 1292 Score = 44.1 bits (22), Expect = 0.21 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Plus Query: 2 gcccaggnatgtcaagnatccagggtgtgtggtacgcgcagctcg 46 ||||| | |||||||| ||||| || ||||||||||||||||||| Sbjct: 1023 gcccaaggatgtcaag-atccaaggggtgtggtacgcgcagctcg 1066
>dbj|AK104649.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-B02, full insert sequence Length = 1272 Score = 44.1 bits (22), Expect = 0.21 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Plus Query: 2 gcccaggnatgtcaagnatccagggtgtgtggtacgcgcagctcg 46 ||||| | |||||||| ||||| || ||||||||||||||||||| Sbjct: 1003 gcccaaggatgtcaag-atccaaggggtgtggtacgcgcagctcg 1046
>dbj|AK104080.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A06, full insert sequence Length = 1159 Score = 44.1 bits (22), Expect = 0.21 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Plus Query: 2 gcccaggnatgtcaagnatccagggtgtgtggtacgcgcagctcg 46 ||||| | |||||||| ||||| || ||||||||||||||||||| Sbjct: 1003 gcccaaggatgtcaag-atccaaggggtgtggtacgcgcagctcg 1046
>dbj|AK103937.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-G02, full insert sequence Length = 1290 Score = 44.1 bits (22), Expect = 0.21 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Plus Query: 2 gcccaggnatgtcaagnatccagggtgtgtggtacgcgcagctcg 46 ||||| | |||||||| ||||| || ||||||||||||||||||| Sbjct: 1023 gcccaaggatgtcaag-atccaaggggtgtggtacgcgcagctcg 1066
>dbj|AK103920.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B04, full insert sequence Length = 1313 Score = 44.1 bits (22), Expect = 0.21 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Plus Query: 2 gcccaggnatgtcaagnatccagggtgtgtggtacgcgcagctcg 46 ||||| | |||||||| ||||| || ||||||||||||||||||| Sbjct: 1006 gcccaaggatgtcaag-atccaaggggtgtggtacgcgcagctcg 1049
>dbj|AK067715.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119C03, full insert sequence Length = 1332 Score = 44.1 bits (22), Expect = 0.21 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Plus Query: 2 gcccaggnatgtcaagnatccagggtgtgtggtacgcgcagctcg 46 ||||| | |||||||| ||||| || ||||||||||||||||||| Sbjct: 1028 gcccaaggatgtcaag-atccaaggggtgtggtacgcgcagctcg 1071
>dbj|AK060886.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-B05, full insert sequence Length = 1208 Score = 44.1 bits (22), Expect = 0.21 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Plus Query: 2 gcccaggnatgtcaagnatccagggtgtgtggtacgcgcagctcg 46 ||||| | |||||||| ||||| || ||||||||||||||||||| Sbjct: 1023 gcccaaggatgtcaag-atccaaggggtgtggtacgcgcagctcg 1066
>gb|AC107725.10| Mus musculus chromosome 5, clone RP23-477O15, complete sequence Length = 169321 Score = 42.1 bits (21), Expect = 0.85 Identities = 24/25 (96%) Strand = Plus / Minus Query: 141 tgtgtttgtgtgtgtatctagtata 165 ||||| ||||||||||||||||||| Sbjct: 99417 tgtgtgtgtgtgtgtatctagtata 99393
>gb|AC147721.6| Mus musculus chromosome 10, clone RP24-250J7, complete sequence Length = 70656 Score = 42.1 bits (21), Expect = 0.85 Identities = 24/25 (96%) Strand = Plus / Plus Query: 133 ggcaacaatgtgtttgtgtgtgtat 157 ||||||||||||| ||||||||||| Sbjct: 66975 ggcaacaatgtgtatgtgtgtgtat 66999
>gb|AC132610.3| Mus musculus BAC clone RP23-374N15 from chromosome 6, complete sequence Length = 195587 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 caacaatgtgtttgtgtgtgt 155 ||||||||||||||||||||| Sbjct: 125325 caacaatgtgtttgtgtgtgt 125345
>gb|AC099601.6| Mus musculus chromosome 7, clone RP23-240K1, complete sequence Length = 252659 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 acaatgtgtttgtgtgtgtat 157 ||||||||||||||||||||| Sbjct: 110173 acaatgtgtttgtgtgtgtat 110153
>emb|AL596022.12| Zebrafish DNA sequence from clone BUSM1-107O16 in linkage group 17 Contains part of a novel gene for a protein similar to vertebrate anaplastic lymphoma kinase (ALK) and leukocyte tyrosine kinase receptor prescursor (LTK or TYK1) and part of a novel gene for a protein similar to vertebrate inositol 1,4,5-triphosphate 3-kinase (ITPKA), complete sequence Length = 121941 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 caacaatgtgtttgtgtgtgt 155 ||||||||||||||||||||| Sbjct: 38899 caacaatgtgtttgtgtgtgt 38879
>emb|CR513786.5| Zebrafish DNA sequence from clone CH211-92F19 in linkage group 14, complete sequence Length = 97391 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 gtttatattttagcttctgtt 201 ||||||||||||||||||||| Sbjct: 73752 gtttatattttagcttctgtt 73732
>gb|AC102677.9| Mus musculus chromosome 5, clone RP24-67M11, complete sequence Length = 167898 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 140 atgtgtttgtgtgtgtatcta 160 ||||||||||||||||||||| Sbjct: 108222 atgtgtttgtgtgtgtatcta 108202
>gb|AC026785.4| Homo sapiens chromosome 5 clone CTD-2139B15, complete sequence Length = 152010 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 202 atcatttcttgctcaccagct 222 ||||||||||||||||||||| Sbjct: 64083 atcatttcttgctcaccagct 64103
>emb|BX539317.4| Zebrafish DNA sequence from clone DKEY-170L10 in linkage group 17, complete sequence Length = 117893 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 caacaatgtgtttgtgtgtgt 155 ||||||||||||||||||||| Sbjct: 35617 caacaatgtgtttgtgtgtgt 35597
>dbj|D21109.1|RICYK174 Oryza sativa mRNA for oxygen-evolving protein, partial sequence Length = 328 Score = 42.1 bits (21), Expect = 0.85 Identities = 39/44 (88%), Gaps = 1/44 (2%) Strand = Plus / Plus Query: 2 gcccaggnatgtcaagnatccagggtgtgtggtacgcgcagctc 45 ||||| | |||||||| ||||| || |||||||||||||||||| Sbjct: 44 gcccaaggatgtcaag-atccaaggggtgtggtacgcgcagctc 86
>gb|AC117622.10| Mus musculus chromosome 5, clone RP23-114L5, complete sequence Length = 185368 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 140 atgtgtttgtgtgtgtatcta 160 ||||||||||||||||||||| Sbjct: 1834 atgtgtttgtgtgtgtatcta 1814
>emb|AL590148.8| Zebrafish DNA sequence from clone RP71-30I22 in linkage group 8 Contains part of a novel gene for a protein similar to human FLJ12550, the pim1 gene for pim-1 oncogene (proviral integration site 1), part of a novel gene for a protein similar to vertebrate UDP-galactose transporters, a novel gene for a protein similar to vertebrate caldesmon 1 (CALD1) and a CpG island, complete sequence Length = 140984 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 140 atgtgtttgtgtgtgtatcta 160 ||||||||||||||||||||| Sbjct: 123360 atgtgtttgtgtgtgtatcta 123340
>gb|AC102467.6| Mus musculus chromosome 1, clone RP24-348G21, complete sequence Length = 167344 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 atgtgtttgtgtgtgtatcta 160 ||||||||||||||||||||| Sbjct: 126886 atgtgtttgtgtgtgtatcta 126906
>emb|AL928553.8| Mouse DNA sequence from clone RP23-312N5 on chromosome 2, complete sequence Length = 148202 Score = 42.1 bits (21), Expect = 0.85 Identities = 24/25 (96%) Strand = Plus / Minus Query: 131 gaggcaacaatgtgtttgtgtgtgt 155 ||||||||||||||| ||||||||| Sbjct: 84937 gaggcaacaatgtgtgtgtgtgtgt 84913
>emb|AL445385.4|CNS07ED1 Human chromosome 14 DNA sequence BAC R-126I9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 163784 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 139 aatgtgtttgtgtgtgtatct 159 ||||||||||||||||||||| Sbjct: 120288 aatgtgtttgtgtgtgtatct 120308
>gb|AC023175.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-69B14, complete sequence Length = 195667 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 tcatttcttgctcaccagct 222 |||||||||||||||||||| Sbjct: 166576 tcatttcttgctcaccagct 166557
>gb|AC164103.5| Mus musculus BAC clone RP23-427D2 from chromosome 5, complete sequence Length = 188588 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 atgtgtttgtgtgtgtatct 159 |||||||||||||||||||| Sbjct: 31571 atgtgtttgtgtgtgtatct 31552
>gb|AC134438.3| Mus musculus BAC clone RP24-470G3 from chromosome 5, complete sequence Length = 140395 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 atgtgtttgtgtgtgtatct 159 |||||||||||||||||||| Sbjct: 50836 atgtgtttgtgtgtgtatct 50855
>gb|AC140233.3| Mus musculus BAC clone RP23-282N19 from chromosome 19, complete sequence Length = 195305 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tgtgtttgtgtgtgtatcta 160 |||||||||||||||||||| Sbjct: 29779 tgtgtttgtgtgtgtatcta 29760
>gb|AC124482.3| Mus musculus BAC clone RP24-120B3 from chromosome 14, complete sequence Length = 165934 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 tgtgtttgtgtgtgtatctagtat 164 ||||||||||||||| |||||||| Sbjct: 143583 tgtgtttgtgtgtgtgtctagtat 143560
>gb|AC129326.3| Mus musculus BAC clone RP23-326H12 from chromosome 19, complete sequence Length = 184128 Score = 40.1 bits (20), Expect = 3.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 141 tgtgtttgtgtgtgtatctagtataaaa 168 ||||| ||||||||||||||| |||||| Sbjct: 110753 tgtgtgtgtgtgtgtatctagaataaaa 110726
>gb|AC092089.2| Danio rerio clone 85I7, complete sequence Length = 62442 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 aacaatgtgtttgtgtgtgt 155 |||||||||||||||||||| Sbjct: 7780 aacaatgtgtttgtgtgtgt 7761
>gb|AC124178.3| Mus musculus BAC clone RP23-193J15 from 18, complete sequence Length = 206833 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 atgtgtttgtgtgtgtatct 159 |||||||||||||||||||| Sbjct: 110556 atgtgtttgtgtgtgtatct 110575
>gb|AC122808.3| Mus musculus BAC clone RP23-298M23 from 3, complete sequence Length = 190130 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 tgtgtttgtgtgtgtatcta 160 |||||||||||||||||||| Sbjct: 128114 tgtgtttgtgtgtgtatcta 128133 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 tgtgtttgtgtgtgtatcta 160 |||||||||||||||||||| Sbjct: 127976 tgtgtttgtgtgtgtatcta 127995
>gb|AC116451.7| Mus musculus chromosome 19, clone RP24-273P9, complete sequence Length = 218079 Score = 40.1 bits (20), Expect = 3.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 141 tgtgtttgtgtgtgtatctagtataaaa 168 ||||| ||||||||||||||| |||||| Sbjct: 209960 tgtgtgtgtgtgtgtatctagaataaaa 209933
>emb|AL731544.11| Human DNA sequence from clone RP11-514F8 on chromosome 10 Contains the 3' end of the gene for a novel SH2 domain-containing protein, a novel gene and a CpG island, complete sequence Length = 98873 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 atgtgtttgtgtgtgtatct 159 |||||||||||||||||||| Sbjct: 89101 atgtgtttgtgtgtgtatct 89120
>emb|AL591604.6| Human DNA sequence from clone RP11-356F4 on chromosome 1 Contains the 5' end of the SLICK gene for a sodium- and chloride-activated ATP-sensitive potassium channel, complete sequence Length = 185560 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tgtgtttgtgtgtgtatcta 160 |||||||||||||||||||| Sbjct: 63227 tgtgtttgtgtgtgtatcta 63208
>emb|AL589844.4| Human DNA sequence from clone RP11-436F21 on chromosome 9 Contains the 3' end of a novel gene and 5'end of a novel gene, complete sequence Length = 157982 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tgtgtttgtgtgtgtatcta 160 |||||||||||||||||||| Sbjct: 62265 tgtgtttgtgtgtgtatcta 62246
>emb|CR354557.9| Zebrafish DNA sequence from clone DKEY-34I7 in linkage group 23, complete sequence Length = 127420 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 tttatattttagcttctgtt 201 |||||||||||||||||||| Sbjct: 79462 tttatattttagcttctgtt 79443
>gb|AC108484.25| Mus musculus strain 129/Sv clone ct7-293m19 map 19, complete sequence Length = 170321 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tgtgtttgtgtgtgtatcta 160 |||||||||||||||||||| Sbjct: 39161 tgtgtttgtgtgtgtatcta 39142
>emb|CR628395.7| Zebrafish DNA sequence from clone DKEY-165E24, complete sequence Length = 250797 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 caacaatgtgtttgtgtgtg 154 |||||||||||||||||||| Sbjct: 160408 caacaatgtgtttgtgtgtg 160427
>emb|BX005114.6| Mouse DNA sequence from clone RP24-199F23 on chromosome 11 no genes, complete sequence Length = 135695 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 tgtgtttgtgtgtgtatcta 160 |||||||||||||||||||| Sbjct: 39606 tgtgtttgtgtgtgtatcta 39625
>gb|AC116693.23| Mus musculus chromosome 8, clone RP24-372D19, complete sequence Length = 163719 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 tgtgtttgtgtgtgtatcta 160 |||||||||||||||||||| Sbjct: 34531 tgtgtttgtgtgtgtatcta 34550 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 tgtgtttgtgtgtgtatcta 160 |||||||||||||||||||| Sbjct: 34286 tgtgtttgtgtgtgtatcta 34305
>gb|AC026711.6| Homo sapiens chromosome 5 clone CTD-2093E18, complete sequence Length = 191309 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tgtgtttgtgtgtgtatcta 160 |||||||||||||||||||| Sbjct: 173828 tgtgtttgtgtgtgtatcta 173809
>gb|AC154576.2| Mus musculus BAC clone RP23-372B6 from chromosome 14, complete sequence Length = 152380 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 atgtgtttgtgtgtgtatct 159 |||||||||||||||||||| Sbjct: 71600 atgtgtttgtgtgtgtatct 71581
>gb|AC006375.4| Homo sapiens BAC clone RP11-362A15 from 2, complete sequence Length = 111073 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 tgtgtttgtgtgtgtatctagtat 164 ||||||||||||||||| |||||| Sbjct: 5639 tgtgtttgtgtgtgtatgtagtat 5616
>gb|AC009498.4| Homo sapiens BAC clone RP11-507C18 from 2, complete sequence Length = 199954 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 agaggaaagaatcgaggcaa 137 |||||||||||||||||||| Sbjct: 120448 agaggaaagaatcgaggcaa 120467
>gb|AC092620.2| Homo sapiens BAC clone RP11-231E19 from 2, complete sequence Length = 151037 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 atgtgtttgtgtgtgtatct 159 |||||||||||||||||||| Sbjct: 28038 atgtgtttgtgtgtgtatct 28057
>gb|AC010281.4|AC010281 Homo sapiens chromosome 5 clone CTC-553B9, complete sequence Length = 160378 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 tgtgtttgtgtgtgtatcta 160 |||||||||||||||||||| Sbjct: 61547 tgtgtttgtgtgtgtatcta 61566
>emb|CR854941.8| Zebrafish DNA sequence from clone CH211-214G6 in linkage group 12, complete sequence Length = 135174 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 138 caatgtgtttgtgtgtgtatctag 161 |||||||| ||||||||||||||| Sbjct: 23453 caatgtgtatgtgtgtgtatctag 23476
>gb|AC153016.2| Mus musculus BAC clone RP23-182K18 from 13, complete sequence Length = 224420 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 atgtgtttgtgtgtgtatct 159 |||||||||||||||||||| Sbjct: 149758 atgtgtttgtgtgtgtatct 149739
>emb|BX001012.6| Zebrafish DNA sequence from clone CH211-11C20 in linkage group 4, complete sequence Length = 158481 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 tttatattttagcttctgtt 201 |||||||||||||||||||| Sbjct: 41271 tttatattttagcttctgtt 41290
>gb|AF147744.1|AF147744 Staphylococcus aureus strain C55 lantibiotic structural protein alpha, lantibiotic structural protein beta, lantibiotic modifying enzyme, and transporter genes, complete cds Length = 6276 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 ttatattttagcttctgtta 202 |||||||||||||||||||| Sbjct: 187 ttatattttagcttctgtta 168
>emb|AL117672.5|CNS01DRN Human chromosome 14 DNA sequence BAC R-142C1 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 179902 Score = 40.1 bits (20), Expect = 3.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 142 gtgtttgtgtgtgtatctagtataaaac 169 |||||||||| ||| ||||||||||||| Sbjct: 77311 gtgtttgtgtttgtgtctagtataaaac 77284
>emb|AL162311.5|CNS01RHR Human chromosome 14 DNA sequence BAC R-317N8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 167127 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 tgtgtttgtgtgtgtatcta 160 |||||||||||||||||||| Sbjct: 144496 tgtgtttgtgtgtgtatcta 144515
>dbj|AP002427.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-90I16, complete sequence Length = 154159 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 caatgtgtttgtgtgtgtat 157 |||||||||||||||||||| Sbjct: 63909 caatgtgtttgtgtgtgtat 63890
>emb|CR933820.6| Zebrafish DNA sequence from clone DKEY-183J2 in linkage group 11, complete sequence Length = 230267 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 tgtgtttgtgtgtgtatctagtat 164 ||||||||||||||| |||||||| Sbjct: 172599 tgtgtttgtgtgtgtgtctagtat 172576
>emb|AL954861.11| Zebrafish DNA sequence from clone CH211-8I17, complete sequence Length = 175026 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 tgtgtttgtgtgtgtatcta 160 |||||||||||||||||||| Sbjct: 85823 tgtgtttgtgtgtgtatcta 85842
>emb|CT009600.12| Mouse DNA sequence from clone RP23-76M10 on chromosome 14, complete sequence Length = 217257 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 tgtgtttgtgtgtgtatctagtat 164 ||||||||||||||| |||||||| Sbjct: 187196 tgtgtttgtgtgtgtgtctagtat 187219
>gb|AC150681.2| Mus musculus BAC clone RP24-490A22 from 7, complete sequence Length = 195652 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 atgtgtttgtgtgtgtatct 159 |||||||||||||||||||| Sbjct: 128790 atgtgtttgtgtgtgtatct 128809
>gb|AC129777.4| Mus musculus BAC clone RP23-281H23 from 8, complete sequence Length = 228174 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tgtgtttgtgtgtgtatcta 160 |||||||||||||||||||| Sbjct: 38739 tgtgtttgtgtgtgtatcta 38720
>gb|AC150685.2| Mus musculus BAC clone RP23-239C12 from 19, complete sequence Length = 194627 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 tgtgtttgtgtgtgtatcta 160 |||||||||||||||||||| Sbjct: 24666 tgtgtttgtgtgtgtatcta 24685
>emb|AL137818.4|CNS01DWP Human chromosome 14 DNA sequence BAC R-102C24 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 179714 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 tgtgtttgtgtgtgtatcta 160 |||||||||||||||||||| Sbjct: 4852 tgtgtttgtgtgtgtatcta 4871
>dbj|AP003088.1| Staphylococcus aureus TY4, ETB plasmid DNA, complete sequence Length = 38211 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 ttatattttagcttctgtta 202 |||||||||||||||||||| Sbjct: 24389 ttatattttagcttctgtta 24370 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,103,462 Number of Sequences: 3902068 Number of extensions: 3103462 Number of successful extensions: 160427 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 160167 Number of HSP's gapped (non-prelim): 257 length of query: 259 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 237 effective length of database: 17,147,199,772 effective search space: 4063886345964 effective search space used: 4063886345964 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
