No.
Definition
Score (bits)
E Value
1 ref|XM_474822.1| Oryza sativa (japonica cultivar-group), predic...
74
3e-10
2 emb|AL606606.3|OSJN00046 Oryza sativa genomic DNA, chromosome 4,...
74
3e-10
3 dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D...
74
3e-10
4 dbj|AK100764.1| Oryza sativa (japonica cultivar-group) cDNA clon...
74
3e-10
5 emb|AL442110.2| Oryza sativa genomic DNA, chromosome 4, BAC clon...
74
3e-10
6 ref|XM_474821.1| Oryza sativa (japonica cultivar-group), predic...
66
9e-08
7 ref|XM_474820.1| Oryza sativa (japonica cultivar-group), predic...
66
9e-08
8 dbj|AK065145.1| Oryza sativa (japonica cultivar-group) cDNA clon...
66
9e-08
9 dbj|AK121955.1| Oryza sativa (japonica cultivar-group) cDNA clon...
58
2e-05
10 ref|XM_472856.1| Oryza sativa (japonica cultivar-group), predic...
48
0.020
11 emb|AL731582.2|OSJN00232 Oryza sativa genomic DNA, chromosome 4,...
48
0.020
12 dbj|AK068631.1| Oryza sativa (japonica cultivar-group) cDNA clon...
48
0.020
13 ref|XM_474819.1| Oryza sativa (japonica cultivar-group), predic...
46
0.079
14 gb|AC148711.1| Macaca mulatta Major Histocompatibility Complex B...
44
0.31
15 gb|AC148668.1| Macaca mulatta Major Histocompatibility Complex B...
44
0.31
16 emb|AL954205.1| Pan troglodytes chromosome 22 clone RP43-046M07 ...
40
4.9
17 dbj|BS000633.3| Pan troglodytes chromosome Y clone: PTB-483C22, ...
40
4.9
18 dbj|BS000585.1| Pan troglodytes chromosome Y clone:PTB-582H02, c...
40
4.9
19 emb|AL954206.1| Pan troglodytes chromosome 22 clone PTB-052N04 m...
40
4.9
20 gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
40
4.9
21 gb|AC010972.3|AC010972 Homo sapiens clone RP11-133D3, complete s...
40
4.9
22 gb|AC147710.3| Pan troglodytes BAC clone CH251-473C15 from chrom...
40
4.9
23 dbj|AP000033.1| Homo sapiens genomic DNA, chromosome 21q22.1, se...
40
4.9
24 gb|AC106715.5| Homo sapiens 3 BAC RP11-695J20 (Roswell Park Canc...
40
4.9
25 dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g...
40
4.9
26 emb|BX294183.17| Mouse DNA sequence from clone RP24-388B10 on ch...
40
4.9
27 dbj|AP001713.1| Homo sapiens genomic DNA, chromosome 21q, sectio...
40
4.9
28 gb|AE017221.1| Thermus thermophilus HB27, complete genome
40
4.9
29 emb|AL627204.7| Mouse DNA sequence from clone RP23-118E21 on chr...
40
4.9
30 dbj|AP000266.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2...
40
4.9
31 dbj|AP000178.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2...
40
4.9
32 dbj|AP000102.1| Homo sapiens genomic DNA of 21q22.1, GART and AM...
40
4.9
>emb|AL606606.3 |OSJN00046 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0005B05,
complete sequence
Length = 149134
Score = 73.8 bits (37), Expect = 3e-10
Identities = 94/113 (83%)
Strand = Plus / Plus
Query: 236 gatcttgtcgaaccagacggcgaggaggtacgaggaggagttaccttccatttgttggaa 295
|||||||| |||||||| |||||||||||| |||||||||| || || || | ||||
Sbjct: 103836 gatcttgttgaaccagatggcgaggaggtagaaggaggagttgccatcgatgggccggaa 103895
Query: 296 accgaacgcgaagtcgccggagggcgagagccatgagctggttggcccctggg 348
|| |||||||||||||| || ||||||||||||| | || ||||||| ||||
Sbjct: 103896 tccaaacgcgaagtcgcctgatggcgagagccatgcgttgtttggcccttggg 103948
Score = 65.9 bits (33), Expect = 9e-08
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 213 taccaaacgacagtcttttcatggatcttgtcgaaccagacggcgaggaggtacgaggag 272
||||| ||||| ||||| ||| |||||||| ||||||||||||||| ||||| ||||||
Sbjct: 93597 taccagacgacggtcttgtcagcgatcttgttgaaccagacggcgagcaggtaagaggag 93656
Query: 273 gagtt 277
|||||
Sbjct: 93657 gagtt 93661
Score = 65.9 bits (33), Expect = 9e-08
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 205 tcttggcataccaaacgacagtcttttcatggatcttgtcgaaccagacggcgaggaggt 264
||||||||||||| | ||| ||||| ||| |||||||| ||||||||| ||||| ||||
Sbjct: 82474 tcttggcataccagatgacggtcttgtcagcgatcttgttgaaccagacagcgagcaggt 82533
Query: 265 acgaggaggagtt 277
| |||||||||||
Sbjct: 82534 atgaggaggagtt 82546
Score = 46.1 bits (23), Expect = 0.079
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 237 atcttgtcgaaccagacggcgaggaggtacgaggaggagttaccttccatttgttggaaa 296
||||||| |||||||||||||| |||||| |||||| ||| || || | || ||||
Sbjct: 67304 atcttgttgaaccagacggcgatgaggtagaaggaggtgttgccctctacaggtcggaag 67363
Query: 297 ccgaacgcgaagtcgccggagggcgagagccatga 331
|| || ||||||||||| ||||| || ||||||||
Sbjct: 67364 ccaaatgcgaagtcgccagagggtgatagccatga 67398
>dbj|AP008210.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 73.8 bits (37), Expect = 3e-10
Identities = 94/113 (83%)
Strand = Plus / Plus
Query: 236 gatcttgtcgaaccagacggcgaggaggtacgaggaggagttaccttccatttgttggaa 295
|||||||| |||||||| |||||||||||| |||||||||| || || || | ||||
Sbjct: 6940965 gatcttgttgaaccagatggcgaggaggtagaaggaggagttgccatcgatgggccggaa 6941024
Query: 296 accgaacgcgaagtcgccggagggcgagagccatgagctggttggcccctggg 348
|| |||||||||||||| || ||||||||||||| | || ||||||| ||||
Sbjct: 6941025 tccaaacgcgaagtcgcctgatggcgagagccatgcgttgtttggcccttggg 6941077
Score = 65.9 bits (33), Expect = 9e-08
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 213 taccaaacgacagtcttttcatggatcttgtcgaaccagacggcgaggaggtacgaggag 272
||||| ||||| ||||| ||| |||||||| ||||||||||||||| ||||| ||||||
Sbjct: 6930726 taccagacgacggtcttgtcagcgatcttgttgaaccagacggcgagcaggtaagaggag 6930785
Query: 273 gagtt 277
|||||
Sbjct: 6930786 gagtt 6930790
Score = 65.9 bits (33), Expect = 9e-08
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 205 tcttggcataccaaacgacagtcttttcatggatcttgtcgaaccagacggcgaggaggt 264
||||||||||||| | ||| ||||| ||| |||||||| ||||||||| ||||| ||||
Sbjct: 6919603 tcttggcataccagatgacggtcttgtcagcgatcttgttgaaccagacagcgagcaggt 6919662
Query: 265 acgaggaggagtt 277
| |||||||||||
Sbjct: 6919663 atgaggaggagtt 6919675
Score = 48.1 bits (24), Expect = 0.020
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 238 tcttgtcgaaccagacggcgaggaggta 265
||||||||||||||||||| ||||||||
Sbjct: 23745605 tcttgtcgaaccagacggcaaggaggta 23745578
Score = 46.1 bits (23), Expect = 0.079
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 237 atcttgtcgaaccagacggcgaggaggtacgaggaggagttaccttccatttgttggaaa 296
||||||| |||||||||||||| |||||| |||||| ||| || || | || ||||
Sbjct: 6904433 atcttgttgaaccagacggcgatgaggtagaaggaggtgttgccctctacaggtcggaag 6904492
Query: 297 ccgaacgcgaagtcgccggagggcgagagccatga 331
|| || ||||||||||| ||||| || ||||||||
Sbjct: 6904493 ccaaatgcgaagtcgccagagggtgatagccatga 6904527
>emb|AL442110.2 | Oryza sativa genomic DNA, chromosome 4, BAC clone: H0512B01, complete
sequence
Length = 140069
Score = 73.8 bits (37), Expect = 3e-10
Identities = 94/113 (83%)
Strand = Plus / Plus
Query: 236 gatcttgtcgaaccagacggcgaggaggtacgaggaggagttaccttccatttgttggaa 295
|||||||| |||||||| |||||||||||| |||||||||| || || || | ||||
Sbjct: 134936 gatcttgttgaaccagatggcgaggaggtagaaggaggagttgccatcgatgggccggaa 134995
Query: 296 accgaacgcgaagtcgccggagggcgagagccatgagctggttggcccctggg 348
|| |||||||||||||| || ||||||||||||| | || ||||||| ||||
Sbjct: 134996 tccaaacgcgaagtcgcctgatggcgagagccatgcgttgtttggcccttggg 135048
Score = 65.9 bits (33), Expect = 9e-08
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 213 taccaaacgacagtcttttcatggatcttgtcgaaccagacggcgaggaggtacgaggag 272
||||| ||||| ||||| ||| |||||||| ||||||||||||||| ||||| ||||||
Sbjct: 123072 taccagacgacggtcttctcagcgatcttgttgaaccagacggcgagcaggtaagaggag 123131
Query: 273 gagtt 277
|||||
Sbjct: 123132 gagtt 123136
Score = 46.1 bits (23), Expect = 0.079
Identities = 77/95 (81%)
Strand = Plus / Plus
Query: 237 atcttgtcgaaccagacggcgaggaggtacgaggaggagttaccttccatttgttggaaa 296
||||||| |||||||||||||| |||||| |||||| ||| || || | || ||||
Sbjct: 101009 atcttgttgaaccagacggcgatgaggtagaaggaggtgttgccctctacaggtcggaag 101068
Query: 297 ccgaacgcgaagtcgccggagggcgagagccatga 331
|| || ||||||||||| ||||| || ||||||||
Sbjct: 101069 ccaaatgcgaagtcgccagagggtgatagccatga 101103
>dbj|AP000178.1 | Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
Q78C10-f32E9, segment 5/21, complete sequence
Length = 100000
Score = 40.1 bits (20), Expect = 4.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 8 cactttgctttgccatctac 27
||||||||||||||||||||
Sbjct: 52018 cactttgctttgccatctac 52037
>dbj|AP000102.1 | Homo sapiens genomic DNA of 21q22.1, GART and AML related,
Q78C10-149C3 region, segment 5/20
Length = 100000
Score = 40.1 bits (20), Expect = 4.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 8 cactttgctttgccatctac 27
||||||||||||||||||||
Sbjct: 52018 cactttgctttgccatctac 52037
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,475,930
Number of Sequences: 3902068
Number of extensions: 2475930
Number of successful extensions: 41434
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41293
Number of HSP's gapped (non-prelim): 132
length of query: 366
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 344
effective length of database: 17,147,199,772
effective search space: 5898636721568
effective search space used: 5898636721568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)