ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal22j21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP004953.1| Lotus japonicus genomic DNA, chromosome 3, clone... 42 1.6
2gb|AC137622.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.5
3gb|AC135430.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.5
4emb|AL133214.12| Human DNA sequence from clone RP11-163F8 on chr... 40 6.5
5emb|Z68144.1|SPAC3H1 S. pombe chromosome I cosmid c3H1 40 6.5
6emb|BX548154.1|CNS09SBK clone A24K23, A41I8 of Tetraodon nigrovi... 40 6.5
7emb|BX572609.1|CNS09SBP Tetraodon nigroviridis BAC sequence 40 6.5
8gb|AC135611.25| Pan troglodytes clone rp43-14h17, complete sequence 40 6.5
9dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001 40 6.5
10gb|AC016830.5| Homo sapiens chromosome 22 clone b81b3 map 22q11,... 40 6.5
11gb|AC016027.15| Homo sapiens chromosome 22 clone b476c20 map 22q... 40 6.5
12dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
13dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
14dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
15gb|DQ009988.1| Oryza sativa (japonica cultivar-group) dsRNA bind... 40 6.5
16dbj|AK121852.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
17dbj|AK103543.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
18dbj|AK072444.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
19dbj|AK063961.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
20gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.5
21gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.5
22emb|BX000510.1|CNS08CE0 Oryza sativa chromosome 12, . BAC OJ1769... 40 6.5
23emb|BX000493.1|CNS08CDJ Oryza sativa chromosome 11, . BAC OSJNBb... 40 6.5
24emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa... 40 6.5
25gb|AC116390.13| Mus musculus chromosome 15, clone RP23-78N1, com... 40 6.5

>dbj|AP004953.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT34A24, TM0129,
             complete sequence
          Length = 110487

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 113   atgcaacctgatgaagaagct 133
             |||||||||||||||||||||
Sbjct: 45485 atgcaacctgatgaagaagct 45465



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>gb|AC137622.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0118N20, complete sequence
          Length = 146139

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 397   cagtgacacagcaatgctgcaacctgatgatgaaggtaga 436
             ||||||| | ||| || |||||||||||||||||| ||||
Sbjct: 75116 cagtgacgctgcattggtgcaacctgatgatgaagctaga 75077



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>gb|AC135430.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0671E09,
             complete sequence
          Length = 158472

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 397   cagtgacacagcaatgctgcaacctgatgatgaaggtaga 436
             ||||||| | ||| || |||||||||||||||||| ||||
Sbjct: 26546 cagtgacgctgcattggtgcaacctgatgatgaagctaga 26507



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>emb|AL133214.12| Human DNA sequence from clone RP11-163F8 on chromosome 9p21.2-23
             Contains the 3' end of a novel gene (FLJ20276), the 5' end
             of the SH3GL2 gene for SH3-domain GRB2-like 2 (CNSA2,
             SH3P4, EEN-B1, SH3D2A), a poly(A)-binding protein
             pseudogene and a CpG Island, complete sequence
          Length = 154621

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 251   gctacaaaagtaggacagga 270
             ||||||||||||||||||||
Sbjct: 84492 gctacaaaagtaggacagga 84473



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>emb|Z68144.1|SPAC3H1 S. pombe chromosome I cosmid c3H1
          Length = 36920

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 181   tgatgaagacgctttgccattcga 204
             ||||||||||||||||| ||||||
Sbjct: 10212 tgatgaagacgctttgctattcga 10189



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>emb|BX548154.1|CNS09SBK clone A24K23, A41I8 of Tetraodon nigroviridis
          Length = 265677

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 429    aaggtagaagaggaaagcaggaac 452
              |||||||||||||| |||||||||
Sbjct: 204721 aaggtagaagaggagagcaggaac 204698



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>emb|BX572609.1|CNS09SBP Tetraodon nigroviridis BAC sequence
          Length = 265677

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 429    aaggtagaagaggaaagcaggaac 452
              |||||||||||||| |||||||||
Sbjct: 204721 aaggtagaagaggagagcaggaac 204698



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>gb|AC135611.25| Pan troglodytes clone rp43-14h17, complete sequence
          Length = 215721

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 431    ggtagaagaggaaagcaggaacca 454
              ||||||||||||||||||| ||||
Sbjct: 107298 ggtagaagaggaaagcaggcacca 107321



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>dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001
          Length = 2005935

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 331    accggccggtaacactgcaa 350
              ||||||||||||||||||||
Sbjct: 947976 accggccggtaacactgcaa 947995



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>gb|AC016830.5| Homo sapiens chromosome 22 clone b81b3 map 22q11, complete sequence
          Length = 192720

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 431   ggtagaagaggaaagcaggaacca 454
             ||||||||||||||||||| ||||
Sbjct: 20392 ggtagaagaggaaagcaggcacca 20415



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>gb|AC016027.15| Homo sapiens chromosome 22 clone b476c20 map 22q11, complete sequence
          Length = 174991

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 431   ggtagaagaggaaagcaggaacca 454
             ||||||||||||||||||| ||||
Sbjct: 15699 ggtagaagaggaaagcaggcacca 15722



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 397    cagtgacacagcaatgctgcaacctgatgatgaaggtaga 436
              ||||||| | ||| || |||||||||||||||||| ||||
Sbjct: 535715 cagtgacgctgcattggtgcaacctgatgatgaagctaga 535676



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 397    cagtgacacagcaatgctgcaacctgatgatgaaggtaga 436
              ||||||| | ||| || |||||||||||||||||| ||||
Sbjct: 457022 cagtgacgctgcattggtgcaacctgatgatgaagctaga 456983



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                        
Query: 397      cagtgacacagcaatgctgcaacctgatgatgaaggtaga 436
                ||||||| | ||| || |||||||||||||||||| ||||
Sbjct: 13809044 cagtgacgctgcattggtgcaacctgatgatgaagctaga 13809005



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>gb|DQ009988.1| Oryza sativa (japonica cultivar-group) dsRNA binding protein RBP
           (RBP) mRNA, complete cds
          Length = 1233

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 397 cagtgacacagcaatgctgcaacctgatgatgaaggtaga 436
           ||||||| | ||| || |||||||||||||||||| ||||
Sbjct: 924 cagtgacgctgcattggtgcaacctgatgatgaagctaga 963



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>dbj|AK121852.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101N14, full
            insert sequence
          Length = 1826

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                    
Query: 397  cagtgacacagcaatgctgcaacctgatgatgaaggtaga 436
            ||||||| | ||| || |||||||||||||||||| ||||
Sbjct: 1006 cagtgacgctgcattggtgcaacctgatgatgaagctaga 1045



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>dbj|AK103543.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132D17, full
            insert sequence
          Length = 1752

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 442  aaagcaggaaccactcatcggcactgcaatgc 473
            ||||||||||||| ||||||  ||||||||||
Sbjct: 1143 aaagcaggaaccattcatcgatactgcaatgc 1174



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                            
Query: 414  tgcaacctgatgatgaaggtagaagaggaaagcaggaaccactcatcg 461
            |||||||| |||| |||| || ||| || ||||||||||||| |||||
Sbjct: 1055 tgcaacctaatgaggaagctataagtggtaagcaggaaccacccatcg 1102



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                    
Query: 397  cagtgacacagcaatgctgcaacctgatgatgaaggtaga 436
            ||||||| | ||| || |||||||||||||||||| ||||
Sbjct: 981  cagtgacgctgcattggtgcaacctgatgatgaagctaga 1020



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>dbj|AK072444.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111A18, full
            insert sequence
          Length = 1903

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                    
Query: 397  cagtgacacagcaatgctgcaacctgatgatgaaggtaga 436
            ||||||| | ||| || |||||||||||||||||| ||||
Sbjct: 1268 cagtgacgctgcattggtgcaacctgatgatgaagctaga 1307



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>dbj|AK063961.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-G10, full
            insert sequence
          Length = 1829

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                    
Query: 397  cagtgacacagcaatgctgcaacctgatgatgaaggtaga 436
            ||||||| | ||| || |||||||||||||||||| ||||
Sbjct: 1004 cagtgacgctgcattggtgcaacctgatgatgaagctaga 1043



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 397    cagtgacacagcaatgctgcaacctgatgatgaaggtaga 436
              ||||||| | ||| || |||||||||||||||||| ||||
Sbjct: 457022 cagtgacgctgcattggtgcaacctgatgatgaagctaga 456983



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 397    cagtgacacagcaatgctgcaacctgatgatgaaggtaga 436
              ||||||| | ||| || |||||||||||||||||| ||||
Sbjct: 535715 cagtgacgctgcattggtgcaacctgatgatgaagctaga 535676



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>emb|BX000510.1|CNS08CE0 Oryza sativa chromosome 12, . BAC OJ1769_D07 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 115859

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                      
Query: 397    cagtgacacagcaatgctgcaacctgatgatgaaggtaga 436
              ||||||| | ||| || |||||||||||||||||| ||||
Sbjct: 113128 cagtgacgctgcattggtgcaacctgatgatgaagctaga 113167



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>emb|BX000493.1|CNS08CDJ Oryza sativa chromosome 11, . BAC OSJNBb0037D03 of library OSJNBb from
              chromosome 11 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 130544

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                      
Query: 397    cagtgacacagcaatgctgcaacctgatgatgaaggtaga 436
              ||||||| | ||| || |||||||||||||||||| ||||
Sbjct: 113290 cagtgacgctgcattggtgcaacctgatgatgaagctaga 113329



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>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 141089

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 397   cagtgacacagcaatgctgcaacctgatgatgaaggtaga 436
             ||||||| | ||| || |||||||||||||||||| ||||
Sbjct: 11057 cagtgacgctgcattggtgcaacctgatgatgaagctaga 11096



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>gb|AC116390.13| Mus musculus chromosome 15, clone RP23-78N1, complete sequence
          Length = 232133

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 437   agaggaaagcaggaaccact 456
             ||||||||||||||||||||
Sbjct: 63779 agaggaaagcaggaaccact 63760


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,356,743
Number of Sequences: 3902068
Number of extensions: 3356743
Number of successful extensions: 61037
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60822
Number of HSP's gapped (non-prelim): 215
length of query: 481
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 459
effective length of database: 17,147,199,772
effective search space: 7870564695348
effective search space used: 7870564695348
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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