| Clone Name | baal22j21 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP004953.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT34A24, TM0129, complete sequence Length = 110487 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 atgcaacctgatgaagaagct 133 ||||||||||||||||||||| Sbjct: 45485 atgcaacctgatgaagaagct 45465
>gb|AC137622.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0118N20, complete sequence Length = 146139 Score = 40.1 bits (20), Expect = 6.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 397 cagtgacacagcaatgctgcaacctgatgatgaaggtaga 436 ||||||| | ||| || |||||||||||||||||| |||| Sbjct: 75116 cagtgacgctgcattggtgcaacctgatgatgaagctaga 75077
>gb|AC135430.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0671E09, complete sequence Length = 158472 Score = 40.1 bits (20), Expect = 6.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 397 cagtgacacagcaatgctgcaacctgatgatgaaggtaga 436 ||||||| | ||| || |||||||||||||||||| |||| Sbjct: 26546 cagtgacgctgcattggtgcaacctgatgatgaagctaga 26507
>emb|AL133214.12| Human DNA sequence from clone RP11-163F8 on chromosome 9p21.2-23 Contains the 3' end of a novel gene (FLJ20276), the 5' end of the SH3GL2 gene for SH3-domain GRB2-like 2 (CNSA2, SH3P4, EEN-B1, SH3D2A), a poly(A)-binding protein pseudogene and a CpG Island, complete sequence Length = 154621 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 gctacaaaagtaggacagga 270 |||||||||||||||||||| Sbjct: 84492 gctacaaaagtaggacagga 84473
>emb|Z68144.1|SPAC3H1 S. pombe chromosome I cosmid c3H1 Length = 36920 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 181 tgatgaagacgctttgccattcga 204 ||||||||||||||||| |||||| Sbjct: 10212 tgatgaagacgctttgctattcga 10189
>emb|BX548154.1|CNS09SBK clone A24K23, A41I8 of Tetraodon nigroviridis Length = 265677 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 429 aaggtagaagaggaaagcaggaac 452 |||||||||||||| ||||||||| Sbjct: 204721 aaggtagaagaggagagcaggaac 204698
>emb|BX572609.1|CNS09SBP Tetraodon nigroviridis BAC sequence Length = 265677 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 429 aaggtagaagaggaaagcaggaac 452 |||||||||||||| ||||||||| Sbjct: 204721 aaggtagaagaggagagcaggaac 204698
>gb|AC135611.25| Pan troglodytes clone rp43-14h17, complete sequence Length = 215721 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 431 ggtagaagaggaaagcaggaacca 454 ||||||||||||||||||| |||| Sbjct: 107298 ggtagaagaggaaagcaggcacca 107321
>dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001 Length = 2005935 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 accggccggtaacactgcaa 350 |||||||||||||||||||| Sbjct: 947976 accggccggtaacactgcaa 947995
>gb|AC016830.5| Homo sapiens chromosome 22 clone b81b3 map 22q11, complete sequence Length = 192720 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 431 ggtagaagaggaaagcaggaacca 454 ||||||||||||||||||| |||| Sbjct: 20392 ggtagaagaggaaagcaggcacca 20415
>gb|AC016027.15| Homo sapiens chromosome 22 clone b476c20 map 22q11, complete sequence Length = 174991 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 431 ggtagaagaggaaagcaggaacca 454 ||||||||||||||||||| |||| Sbjct: 15699 ggtagaagaggaaagcaggcacca 15722
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 397 cagtgacacagcaatgctgcaacctgatgatgaaggtaga 436 ||||||| | ||| || |||||||||||||||||| |||| Sbjct: 535715 cagtgacgctgcattggtgcaacctgatgatgaagctaga 535676
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 397 cagtgacacagcaatgctgcaacctgatgatgaaggtaga 436 ||||||| | ||| || |||||||||||||||||| |||| Sbjct: 457022 cagtgacgctgcattggtgcaacctgatgatgaagctaga 456983
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 397 cagtgacacagcaatgctgcaacctgatgatgaaggtaga 436 ||||||| | ||| || |||||||||||||||||| |||| Sbjct: 13809044 cagtgacgctgcattggtgcaacctgatgatgaagctaga 13809005
>gb|DQ009988.1| Oryza sativa (japonica cultivar-group) dsRNA binding protein RBP (RBP) mRNA, complete cds Length = 1233 Score = 40.1 bits (20), Expect = 6.5 Identities = 35/40 (87%) Strand = Plus / Plus Query: 397 cagtgacacagcaatgctgcaacctgatgatgaaggtaga 436 ||||||| | ||| || |||||||||||||||||| |||| Sbjct: 924 cagtgacgctgcattggtgcaacctgatgatgaagctaga 963
>dbj|AK121852.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101N14, full insert sequence Length = 1826 Score = 40.1 bits (20), Expect = 6.5 Identities = 35/40 (87%) Strand = Plus / Plus Query: 397 cagtgacacagcaatgctgcaacctgatgatgaaggtaga 436 ||||||| | ||| || |||||||||||||||||| |||| Sbjct: 1006 cagtgacgctgcattggtgcaacctgatgatgaagctaga 1045
>dbj|AK103543.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132D17, full insert sequence Length = 1752 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 442 aaagcaggaaccactcatcggcactgcaatgc 473 ||||||||||||| |||||| |||||||||| Sbjct: 1143 aaagcaggaaccattcatcgatactgcaatgc 1174 Score = 40.1 bits (20), Expect = 6.5 Identities = 41/48 (85%) Strand = Plus / Plus Query: 414 tgcaacctgatgatgaaggtagaagaggaaagcaggaaccactcatcg 461 |||||||| |||| |||| || ||| || ||||||||||||| ||||| Sbjct: 1055 tgcaacctaatgaggaagctataagtggtaagcaggaaccacccatcg 1102 Score = 40.1 bits (20), Expect = 6.5 Identities = 35/40 (87%) Strand = Plus / Plus Query: 397 cagtgacacagcaatgctgcaacctgatgatgaaggtaga 436 ||||||| | ||| || |||||||||||||||||| |||| Sbjct: 981 cagtgacgctgcattggtgcaacctgatgatgaagctaga 1020
>dbj|AK072444.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111A18, full insert sequence Length = 1903 Score = 40.1 bits (20), Expect = 6.5 Identities = 35/40 (87%) Strand = Plus / Plus Query: 397 cagtgacacagcaatgctgcaacctgatgatgaaggtaga 436 ||||||| | ||| || |||||||||||||||||| |||| Sbjct: 1268 cagtgacgctgcattggtgcaacctgatgatgaagctaga 1307
>dbj|AK063961.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-G10, full insert sequence Length = 1829 Score = 40.1 bits (20), Expect = 6.5 Identities = 35/40 (87%) Strand = Plus / Plus Query: 397 cagtgacacagcaatgctgcaacctgatgatgaaggtaga 436 ||||||| | ||| || |||||||||||||||||| |||| Sbjct: 1004 cagtgacgctgcattggtgcaacctgatgatgaagctaga 1043
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 397 cagtgacacagcaatgctgcaacctgatgatgaaggtaga 436 ||||||| | ||| || |||||||||||||||||| |||| Sbjct: 457022 cagtgacgctgcattggtgcaacctgatgatgaagctaga 456983
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 397 cagtgacacagcaatgctgcaacctgatgatgaaggtaga 436 ||||||| | ||| || |||||||||||||||||| |||| Sbjct: 535715 cagtgacgctgcattggtgcaacctgatgatgaagctaga 535676
>emb|BX000510.1|CNS08CE0 Oryza sativa chromosome 12, . BAC OJ1769_D07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 115859 Score = 40.1 bits (20), Expect = 6.5 Identities = 35/40 (87%) Strand = Plus / Plus Query: 397 cagtgacacagcaatgctgcaacctgatgatgaaggtaga 436 ||||||| | ||| || |||||||||||||||||| |||| Sbjct: 113128 cagtgacgctgcattggtgcaacctgatgatgaagctaga 113167
>emb|BX000493.1|CNS08CDJ Oryza sativa chromosome 11, . BAC OSJNBb0037D03 of library OSJNBb from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 130544 Score = 40.1 bits (20), Expect = 6.5 Identities = 35/40 (87%) Strand = Plus / Plus Query: 397 cagtgacacagcaatgctgcaacctgatgatgaaggtaga 436 ||||||| | ||| || |||||||||||||||||| |||| Sbjct: 113290 cagtgacgctgcattggtgcaacctgatgatgaagctaga 113329
>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 141089 Score = 40.1 bits (20), Expect = 6.5 Identities = 35/40 (87%) Strand = Plus / Plus Query: 397 cagtgacacagcaatgctgcaacctgatgatgaaggtaga 436 ||||||| | ||| || |||||||||||||||||| |||| Sbjct: 11057 cagtgacgctgcattggtgcaacctgatgatgaagctaga 11096
>gb|AC116390.13| Mus musculus chromosome 15, clone RP23-78N1, complete sequence Length = 232133 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 437 agaggaaagcaggaaccact 456 |||||||||||||||||||| Sbjct: 63779 agaggaaagcaggaaccact 63760 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,356,743 Number of Sequences: 3902068 Number of extensions: 3356743 Number of successful extensions: 61037 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60822 Number of HSP's gapped (non-prelim): 215 length of query: 481 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 459 effective length of database: 17,147,199,772 effective search space: 7870564695348 effective search space used: 7870564695348 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)