>THF1_ORYSA (Q84PB7) Protein THYLAKOID FORMATION1, chloroplast precursor|
          Length = 287

 Score = 81.3 bits (199), Expect = 6e-16
 Identities = 44/69 (63%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
 Frame = +3

Query: 102 MAAISSLPFAALRRAADWRPSTATAAVSV-SGGVMLNXXXXXXXXXXXXCVITAGDIPPT 278
           MAAISSLPFAALRRAAD RPSTA AA    +G V+L+            CV TAGD+PPT
Sbjct: 1   MAAISSLPFAALRRAADCRPSTAAAAAGAGAGAVVLSVRPRRGSRSVVRCVATAGDVPPT 60

Query: 279 VADTKMNFL 305
           VA+TKMNFL
Sbjct: 61  VAETKMNFL 69

>NGF_RAT (P25427) Beta-nerve growth factor precursor (Beta-NGF)|
          Length = 241

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
 Frame = -2

Query: 268 ISPAVMTQRTTEREPRRALALSMTPPETLTAAVAVD----GLQSAAR--RSAANGSDDMA 107
           + P +  +R   R PR  +  S  PP T +  + +D    G  S  R  RS  + +  + 
Sbjct: 72  VDPKLFKKRRL-RSPR--VLFSTQPPPTSSDTLDLDFQAHGTISFNRTHRSKRSSTHPVF 128

Query: 106 AMGESSGCYRLSHWIRRRMVDTAGEGKRVIVQGQV 2
            MGE S C  +S W+  +   T  +GK V V G+V
Sbjct: 129 HMGEFSVCDSVSVWVGDKTTATDIKGKEVTVLGEV 163

>NGF_CAVPO (P19093) Beta-nerve growth factor precursor (Beta-NGF)|
          Length = 241

 Score = 30.8 bits (68), Expect = 0.91
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
 Frame = -2

Query: 205 SMTPPETLTAA----VAVDGLQSAAR--RSAANGSDDMAAMGESSGCYRLSHWIRRRMVD 44
           S  PP   T A      VDG  S  R  RS  + +  +  MGE S C  +S W+  +   
Sbjct: 90  STQPPPLSTDAQDLDFEVDGAASVNRTHRSKRSSTHPVFHMGEFSVCDSVSVWVADKTTA 149

Query: 43  TAGEGKRVIVQGQV 2
           T  +GK V V  +V
Sbjct: 150 TDIKGKEVTVLAEV 163

>AKAP2_HUMAN (Q9Y2D5) A-kinase anchor protein 2 (Protein kinase A-anchoring|
           protein 2) (PRKA2) (AKAP-2)
          Length = 1103

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = -2

Query: 277 VGGISPAVMTQRTTEREPRRALALSMTPPETLTAAVAVDGLQSAARRSAANGSDDMAAMG 98
           VGG+SP V     T+ EP    A    PP    +  + D +  A R +  + S    A+G
Sbjct: 318 VGGLSPPV--HEATQPEPTERTASRQAPPHIELSNSSPDPMAEAERTNGHSPSQPRDALG 375

Query: 97  ES 92
           +S
Sbjct: 376 DS 377

>NGF_PRANA (P20675) Beta-nerve growth factor precursor (Beta-NGF)|
          Length = 241

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
 Frame = -2

Query: 268 ISPAVMTQRTTEREPRRALALSMTPPETLTAAVAVD----GLQSAAR--RSAANGSDDMA 107
           + P +  +R   R PR  +  S  PP T +  + +D    G  S  R  RS  + +  + 
Sbjct: 72  VDPRLFKKRKL-RSPR--VLFSTQPPPTSSDTLDLDFQAHGTISFNRTHRSKRSSTHPVF 128

Query: 106 AMGESSGCYRLSHWIRRRMVDTAGEGKRVIVQGQV 2
            MGE S C  +S W+  +   T  +G  V V G+V
Sbjct: 129 QMGEFSVCDSVSVWVGDKTTATDIKGNEVTVLGEV 163

>NGF_BOVIN (P13600) Beta-nerve growth factor precursor (Beta-NGF) (Fragment)|
          Length = 231

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
 Frame = -2

Query: 268 ISPAVMTQRTTEREPRRALALSMTPPETLTAAVAVD----GLQSAAR--RSAANGSDDMA 107
           + P +  +R   R PR  +  S  PP        +D    G  S  R  RS  + S  + 
Sbjct: 62  VDPKLFKKRRL-RSPR--VLFSTQPPPVAADTQDLDFEAGGASSFNRTHRSKRSSSHPVL 118

Query: 106 AMGESSGCYRLSHWIRRRMVDTAGEGKRVIVQGQV 2
             GE S C  +S W+  +   T  +GK V+V G+V
Sbjct: 119 HRGEFSVCDSISVWVGDKTTATDIKGKEVMVLGEV 153

>NGF_PIG (Q29074) Beta-nerve growth factor precursor (Beta-NGF) (Fragment)|
          Length = 229

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
 Frame = -2

Query: 268 ISPAVMTQRTTEREPRRALALSMTPP----ETLTAAVAVDGLQSAAR--RSAANGSDDMA 107
           + P +  +R   R PR  +  S  PP    +T    +   G  S  R  RS  + S  + 
Sbjct: 60  VDPKLFKKRRL-RSPR--VLFSTQPPPVAADTQDPDLEASGAASFNRTHRSKRSSSHPVF 116

Query: 106 AMGESSGCYRLSHWIRRRMVDTAGEGKRVIVQGQV 2
             GE S C  +S W+  +   T  +GK V+V G+V
Sbjct: 117 HRGEFSVCDSVSVWVGDKTTATDIKGKEVMVLGEV 151

>NGF_PANTR (Q9N2F1) Beta-nerve growth factor precursor (Beta-NGF)|
          Length = 241

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
 Frame = -2

Query: 268 ISPAVMTQRTTEREPRRALALSMTPPET-----LTAAVAVDGLQSAARRSAANGSDDMAA 104
           + P +  +R   R PR  L  +  PPE      L   V      +   RS  + S  +  
Sbjct: 72  VDPRLFKKRRL-RSPR-VLFSTQPPPEAADTQDLDFEVGGAAPFNRTHRSKRSSSHPIFH 129

Query: 103 MGESSGCYRLSHWIRRRMVDTAGEGKRVIVQGQV 2
            GE S C  +S W+  +   T  +GK V+V G+V
Sbjct: 130 RGEFSVCDSVSVWVGDKTTATDIKGKEVMVLGEV 163

>SN_HUMAN (Q9BZZ2) Sialoadhesin precursor (Sialic acid-binding Ig-like|
           lectin-1) (Siglec-1) (CD169 antigen)
          Length = 1709

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +2

Query: 68  VREPVAARGLSHGGHIVAS 124
           V EP+A   LSHGGHI+AS
Sbjct: 436 VSEPLATLVLSHGGHILAS 454

>PFTB_CAEEL (P41992) Probable protein farnesyltransferase beta subunit (EC|
           2.5.1.58) (CAAX farnesyltransferase beta subunit) (RAS
           proteins prenyltransferase beta) (FTase-beta)
          Length = 335

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 98  SHGGHIVASVRCTAPSGRLEAVDGDCRGERLRWRHAQREGSAG 226
           SH G I   V   A +GRL+ +D D   E L +R     G  G
Sbjct: 195 SHSGQIYCCVGALAIAGRLDEIDRDRTAEWLAFRQCDSGGLNG 237

>HMDH1_ORYSA (P48019) 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (EC|
           1.1.1.34) (HMG-CoA reductase 1)
          Length = 509

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 28/69 (40%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
 Frame = +2

Query: 56  PPYPVREPVAARGLSHGG--HIVASVRCTA-PSGRLEAVDGDC-RGERLR---WRHAQRE 214
           PP P        G+  G    IVA+V   A PS RLE+  GDC R  RLR    R     
Sbjct: 77  PPEPAPMHGHGGGMMEGDDEEIVAAVASGALPSHRLESRLGDCRRAARLRREALRRVTGR 136

Query: 215 GSAGLTFGG 241
           G  GL F G
Sbjct: 137 GVEGLPFDG 145

>HXA4_HUMAN (Q00056) Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4)|
          Length = 320

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 20  YPFALTGGVDHP-PPYPVREPVAARGLSHGGH 112
           YP+   GG     PP P + P  A+G +HG H
Sbjct: 100 YPYGYRGGASPGRPPQPEQPPAQAKGPAHGLH 131

>NGF_HUMAN (P01138) Beta-nerve growth factor precursor (Beta-NGF)|
          Length = 241

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 139 RSAANGSDDMAAMGESSGCYRLSHWIRRRMVDTAGEGKRVIVQGQV 2
           RS  + S  +   GE S C  +S W+  +   T  +GK V+V G+V
Sbjct: 118 RSKRSSSHPIFHRGEFSVCDSVSVWVGDKTTATDIKGKEVMVLGEV 163

>THF1_SOLTU (Q7XAB8) Protein THYLAKOID FORMATION1, chloroplast precursor|
          Length = 293

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
 Frame = +3

Query: 102 MAAISSLPFAALRRAADWRPSTATAAVSVS----------GGVMLNXXXXXXXXXXXXCV 251
           MAA++S+ F+A+ ++A+ R S+ +++ S+             V +               
Sbjct: 1   MAAVTSVSFSAITQSAE-RKSSVSSSRSIDTFRFRSNFSFDSVNVRSSNSTSRFVVHCTS 59

Query: 252 ITAGDIPPTVADTKMNFL 305
            +A D+P TVADTK+ FL
Sbjct: 60  SSAADLP-TVADTKLKFL 76

>XYLT1_PANTR (Q5QQ57) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyltransferase I)|
           (Peptide O-xylosyltransferase 1)
          Length = 945

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 7/34 (20%)
 Frame = +2

Query: 29  ALTGGVDHPPPYPVR-------EPVAARGLSHGG 109
           A  GG + PPP P R       EP AARG   GG
Sbjct: 49  AAVGGGEQPPPAPRRERRDLPAEPAAARGGGGGG 82

>MMPLB_MYCTU (P65374) Putative membrane protein mmpL11|
          Length = 966

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 22/68 (32%), Positives = 32/68 (47%)
 Frame = -2

Query: 217 ALALSMTPPETLTAAVAVDGLQSAARRSAANGSDDMAAMGESSGCYRLSHWIRRRMVDTA 38
           A+A++M    TLT AV     ++AA+RSA        A  +S    R   W+ RR   TA
Sbjct: 314 AVAVAMLTSATLTPAVLATFARAAAKRSALVHWSRRPASTQSWFWSRWVGWVMRRPWITA 373

Query: 37  GEGKRVIV 14
                V++
Sbjct: 374 LAASTVLL 381

>MMPLB_MYCBO (P65375) Putative membrane protein mmpL11|
          Length = 966

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 22/68 (32%), Positives = 32/68 (47%)
 Frame = -2

Query: 217 ALALSMTPPETLTAAVAVDGLQSAARRSAANGSDDMAAMGESSGCYRLSHWIRRRMVDTA 38
           A+A++M    TLT AV     ++AA+RSA        A  +S    R   W+ RR   TA
Sbjct: 314 AVAVAMLTSATLTPAVLATFARAAAKRSALVHWSRRPASTQSWFWSRWVGWVMRRPWITA 373

Query: 37  GEGKRVIV 14
                V++
Sbjct: 374 LAASTVLL 381

>PSN_DROME (O02194) Presenilin homolog (EC 3.4.23.-) (dPS) (DmPS)|
          Length = 541

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 90  EDSPMAAISSLPFAALRRAADWRPSTATAAVSVSGGVMLN 209
           +D P AAI ++P   +R     RPS  T     SGG   N
Sbjct: 50  QDQPDAAILAVPNVVMREPCGSRPSRLTGGGGGSGGPPTN 89


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,246,679
Number of Sequences: 219361
Number of extensions: 852306
Number of successful extensions: 3195
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3194
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)