ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal22i08 |
|---|---|
| Clone Library Name | barley_pub |
>SUDA_EMENI (Q00737) Chromosome segregation protein sudA (DA-box protein sudA)| Length = 1211 Score = 32.7 bits (73), Expect = 0.24 Identities = 16/50 (32%), Positives = 25/50 (50%) Frame = +3 Query: 117 AEQQKYLRDANDARDKVYHILDSARDMIAQTEAEKDATKQDIGKDVYDYC 266 AE K + + N R+K+ +LD + +A+ E EKD + KD C Sbjct: 173 AESLKIMHETNSKREKIDELLDFINERLAELEEEKDELRNFQEKDKERRC 222
>VNSS_TSWV1 (P26002) Nonstructural protein NS-S| Length = 464 Score = 30.8 bits (68), Expect = 0.92 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = +3 Query: 15 GDLVDLSPGQLHKLADLIHRQEVQKLQELEFNSYAEQQKYLRDAN 149 G L LSP QLH + +++R ++ +L+ KY+ AN Sbjct: 114 GHLKVLSPAQLHSIESIMNRSDITDRFQLQEKDIIPNDKYIEAAN 158
>ZN212_HUMAN (Q9UDV6) Zinc finger protein 212 (Zinc finger protein C2H2-150)| Length = 495 Score = 30.0 bits (66), Expect = 1.6 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 6/49 (12%) Frame = +3 Query: 9 MSGDLVDLSPGQLHKLADLIHRQEVQKLQE------LEFNSYAEQQKYL 137 M GDL + PG H ++ +QE+Q QE EF+ AE+Q +L Sbjct: 196 MLGDLEEEGPGGAHPAGGVMIKQELQYTQEGPADLPGEFSCIAEEQAFL 244
>KIF5C_MOUSE (P28738) Kinesin heavy chain isoform 5C (Kinesin heavy chain| neuron-specific 2) Length = 956 Score = 30.0 bits (66), Expect = 1.6 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Frame = +3 Query: 54 LADLIHRQEVQKLQELEFNSYAE-QQKYLRDANDARDKVYHILDSARDMIAQTEAEKDAT 230 L L +EV+K E + S+ E QK L D ++ I+D RD+ + + E++ Sbjct: 689 LTRLQDAEEVKKALEQQMESHREAHQKQLSRLRDEIEEKQRIIDEIRDLNQKLQLEQERL 748 Query: 231 KQDIGK 248 D K Sbjct: 749 SSDYNK 754
>GRPE_CANGA (Q6FPH2) GrpE protein homolog, mitochondrial precursor| Length = 231 Score = 29.6 bits (65), Expect = 2.0 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 2/91 (2%) Frame = +3 Query: 18 DLVDLSPGQLHKLADLIHRQEVQKLQELEFNSYAEQQKYLRDANDARDKVYHILDSAR-- 191 + +L L +AD + QEV K + SYA QK+ +D ++ D H L + + Sbjct: 85 EAAELKDRLLRSVADFRNLQEVTKKDVEKAKSYA-LQKFAKDLLESVDNFGHALGAFKEE 143 Query: 192 DMIAQTEAEKDATKQDIGKDVYDYCTKAIGI 284 D+ E T + +DV++ K GI Sbjct: 144 DLEKSKEISDLYTGVKMTRDVFEKTLKKYGI 174
>CAR14_HUMAN (Q9BXL6) Caspase recruitment domain-containing protein 14| (CARD-containing MAGUK protein 2) (Carma 2) Length = 1004 Score = 29.6 bits (65), Expect = 2.0 Identities = 21/67 (31%), Positives = 34/67 (50%) Frame = +3 Query: 42 QLHKLADLIHRQEVQKLQELEFNSYAEQQKYLRDANDARDKVYHILDSARDMIAQTEAEK 221 Q K+A ++R++V LQ E QK RD+ Y DSA+ I+Q+ EK Sbjct: 334 QKSKMACQLYREKVNALQA----QVCELQK-------ERDQAYSARDSAQREISQSLVEK 382 Query: 222 DATKQDI 242 D+ ++ + Sbjct: 383 DSLRRQV 389
>CCRK_PONPY (Q5R7I7) Cell cycle-related kinase (EC 2.7.11.22)| Length = 346 Score = 29.3 bits (64), Expect = 2.7 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%) Frame = +3 Query: 3 YIMSGDLVDLSPGQLHKLADLIHRQ---EVQKLQELEFNSYAEQQK 131 ++ +G++V L L +L D I Q E++ LQE+E N Y Q K Sbjct: 23 HVETGEIVALKKVALRRLEDGIPNQALREIKALQEMEDNQYVVQLK 68
>VNSS_TSWVL (P26003) Nonstructural protein NS-S| Length = 467 Score = 29.3 bits (64), Expect = 2.7 Identities = 13/45 (28%), Positives = 23/45 (51%) Frame = +3 Query: 15 GDLVDLSPGQLHKLADLIHRQEVQKLQELEFNSYAEQQKYLRDAN 149 G L LSP QLH + ++R +++ +L+ +Y+ AN Sbjct: 114 GHLKVLSPDQLHSIGSTMNRSDIKDRFQLQEKDIIPNDRYIEAAN 158
>NDPA_PHOPR (Q6LP12) Nucleoid-associated protein ndpA| Length = 337 Score = 28.9 bits (63), Expect = 3.5 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = +3 Query: 150 DARDKVYHILDSARDMIAQTEAEKDATKQDIGKDVYDYC 266 DA+++ ++ + D A + +K+ KQ K VYDYC Sbjct: 194 DAKEQNQVLMQAVEDFCADSRLDKEE-KQQYRKQVYDYC 231
>ATG11_DEBHA (Q6BRA6) Autophagy-related protein 11| Length = 1282 Score = 28.9 bits (63), Expect = 3.5 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 7/75 (9%) Frame = +3 Query: 51 KLADLIHRQEVQKLQE-------LEFNSYAEQQKYLRDANDARDKVYHILDSARDMIAQT 209 K++D ++ E++K L N + E + ND + V +++S R+ + Sbjct: 222 KISDHLNTSELEKSSSFVSKTLPLVINKFNEMSASINSVNDDKVNVDKLIESLRNESIEN 281 Query: 210 EAEKDATKQDIGKDV 254 + D +DI KDV Sbjct: 282 FKDYDTGSEDIIKDV 296
>KIF5C_HUMAN (O60282) Kinesin heavy chain isoform 5C (Kinesin heavy chain| neuron-specific 2) Length = 957 Score = 28.5 bits (62), Expect = 4.5 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Frame = +3 Query: 54 LADLIHRQEVQKLQELEFNSYAE-QQKYLRDANDARDKVYHILDSARDMIAQTEAEKDAT 230 L L +E++K E + S+ E QK L D ++ I+D RD+ + + E++ Sbjct: 690 LTRLQDAEEMKKALEQQMESHREAHQKQLSRLRDEIEEKQKIIDEIRDLNQKLQLEQEKL 749 Query: 231 KQDIGK 248 D K Sbjct: 750 SSDYNK 755
>Y401_BUCAP (Q8K9D9) Hypothetical protein BUsg401| Length = 219 Score = 28.5 bits (62), Expect = 4.5 Identities = 9/12 (75%), Positives = 10/12 (83%) Frame = -2 Query: 195 CPVHCQGCDTPY 160 CPVHC+ CDT Y Sbjct: 31 CPVHCKWCDTKY 42
>MUTS_STRT2 (Q5M6I1) DNA mismatch repair protein mutS| Length = 852 Score = 28.5 bits (62), Expect = 4.5 Identities = 15/63 (23%), Positives = 33/63 (52%) Frame = +3 Query: 3 YIMSGDLVDLSPGQLHKLADLIHRQEVQKLQELEFNSYAEQQKYLRDANDARDKVYHILD 182 +++ L DL KL +HR ++++L L+ + E + YL+ + + + +L+ Sbjct: 206 HLIGNSLTDLESSVASKLLQYVHRTQMRELSHLQKAQHYEIKDYLQMSYATKSSL-DLLE 264 Query: 183 SAR 191 +AR Sbjct: 265 NAR 267
>MUTS_STRT1 (Q5M1Z0) DNA mismatch repair protein mutS| Length = 852 Score = 28.5 bits (62), Expect = 4.5 Identities = 15/63 (23%), Positives = 33/63 (52%) Frame = +3 Query: 3 YIMSGDLVDLSPGQLHKLADLIHRQEVQKLQELEFNSYAEQQKYLRDANDARDKVYHILD 182 +++ L DL KL +HR ++++L L+ + E + YL+ + + + +L+ Sbjct: 206 HLIGNSLTDLESSVASKLLQYVHRTQMRELSHLQKAQHYEIKDYLQMSYATKSSL-DLLE 264 Query: 183 SAR 191 +AR Sbjct: 265 NAR 267
>RBM6_HUMAN (P78332) RNA-binding protein 6 (RNA-binding motif protein 6)| (RNA-binding protein DEF-3) (Lung cancer antigen NY-LU-12) (Protein G16) Length = 1123 Score = 28.5 bits (62), Expect = 4.5 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%) Frame = +3 Query: 45 LHKLADLIHRQEVQKLQELEFNSYAEQQ-KYLRDANDARDKVYHILDSARDMIAQTEAEK 221 LHK IHR+ Q QEL + E++ K+ ND R+K+ DS + E Sbjct: 979 LHKQNLEIHRKIKQSEQELAYLERREREGKFKGRGNDRREKL-QSFDSPERKRIKYSRET 1037 Query: 222 DATKQDIGKDVYDYCTK 272 D+ ++ + K+ D +K Sbjct: 1038 DSDRKLVDKEDIDTSSK 1054
>PYRB_RALSO (Q8Y1L2) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate| transcarbamylase) (ATCase) Length = 323 Score = 28.1 bits (61), Expect = 5.9 Identities = 12/38 (31%), Positives = 26/38 (68%), Gaps = 2/38 (5%) Frame = +3 Query: 153 ARDKVYHILDSARDMIAQTEAEKDATKQDI--GKDVYD 260 +RD + HILD+A+ ++ ++A+++ K + GK V++ Sbjct: 26 SRDILTHILDTAKQFVSVSDADREVKKVPLLRGKSVFN 63
>CCD93_XENLA (Q6GQI5) Coiled-coil domain-containing protein 93| Length = 609 Score = 28.1 bits (61), Expect = 5.9 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +3 Query: 36 PGQLHKLADLIHRQEVQKLQELEFNSYAEQQ 128 P L KL DL+ + E KLQE +F S ++ Sbjct: 373 PSVLQKLRDLVAQNESLKLQEQQFRSKCREE 403
>ISPG_CHLAB (Q5L669) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 606 Score = 28.1 bits (61), Expect = 5.9 Identities = 12/40 (30%), Positives = 20/40 (50%) Frame = +3 Query: 177 LDSARDMIAQTEAEKDATKQDIGKDVYDYCTKAIGISLQF 296 + S RD + + E+ K KD+ D C A+ I+ +F Sbjct: 427 IHSTRDFFEKKQGEQQPVKLVFSKDLDDECEAAVAIATEF 466
>DNAK_HALSA (Q9HRY2) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 629 Score = 28.1 bits (61), Expect = 5.9 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 3/56 (5%) Frame = +3 Query: 99 LEFNSYAEQQKYLRDANDARDKVYHILDSAR---DMIAQTEAEKDATKQDIGKDVY 257 LE N + D NDA D V +LD D + E T Q+IGK Y Sbjct: 523 LEENEELVDEDLEADVNDAIDDVQAVLDEDEPEIDALETATEELSDTLQEIGKQAY 578
>YKKA_BACSU (P49854) Hypothetical protein ykkA| Length = 175 Score = 27.7 bits (60), Expect = 7.8 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Frame = +3 Query: 69 HRQEVQKLQELEF----NSYAEQQKYLRDANDARDKVYHILDSARDMIAQTEAEKDATKQ 236 H+ V+KL+ + F N+ + + D R ++H+ D R A EA K KQ Sbjct: 109 HQHVVEKLKSVCFTLTENALNQPLSFEGDTATIRWGIWHMADHNRYHQAHIEALKKEWKQ 168 Query: 237 DIGK 248 D+ K Sbjct: 169 DVAK 172
>CCRK_HUMAN (Q8IZL9) Cell cycle-related kinase (EC 2.7.11.22)| (Cyclin-kinase-activating kinase p42) (CDK-activating kinase p42) (CAK-kinase p42) Length = 346 Score = 27.7 bits (60), Expect = 7.8 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%) Frame = +3 Query: 3 YIMSGDLVDLSPGQLHKLADLIHRQ---EVQKLQELEFNSYAEQQK 131 ++ +G++V L L +L D Q E++ LQE+E N Y Q K Sbjct: 23 HVETGEIVALKKVALRRLEDGFPNQALREIKALQEMEDNQYVVQLK 68
>PSB4_YEAST (P30657) Proteasome component PRE4 (EC 3.4.25.1) (Macropain subunit| PRE4) (Proteinase YSCE subunit PRE4) (Multicatalytic endopeptidase complex subunit PRE4) Length = 266 Score = 27.7 bits (60), Expect = 7.8 Identities = 20/71 (28%), Positives = 32/71 (45%) Frame = +3 Query: 66 IHRQEVQKLQELEFNSYAEQQKYLRDANDARDKVYHILDSARDMIAQTEAEKDATKQDIG 245 I + VQ +E N A + Y RDA +R+ I+D + + + + K D Sbjct: 198 IPKTTVQVAEEAIVN--AMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWDFA 255 Query: 246 KDVYDYCTKAI 278 KD+ Y T+ I Sbjct: 256 KDIKGYGTQKI 266
>SMC3_RAT (P97690) Structural maintenance of chromosome 3 (Chondroitin| sulfate proteoglycan 6) (Chromosome segregation protein SmcD) (Bamacan) (Basement membrane-associated chondroitin proteoglycan) Length = 1191 Score = 27.7 bits (60), Expect = 7.8 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 7/64 (10%) Frame = +3 Query: 66 IHRQEVQ----KLQELEFN--SYAEQQKYLRDAN-DARDKVYHILDSARDMIAQTEAEKD 224 I+ QE+ KL EL + E+ + LRDA DARDK+ I R++ + A K+ Sbjct: 227 IYNQELNETRAKLDELSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMKE 286 Query: 225 ATKQ 236 +Q Sbjct: 287 EKEQ 290
>SMC3_BOVIN (O97594) Structural maintenance of chromosome 3 (Chondroitin| sulfate proteoglycan 6) Length = 1218 Score = 27.7 bits (60), Expect = 7.8 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 7/64 (10%) Frame = +3 Query: 66 IHRQEVQ----KLQELEFN--SYAEQQKYLRDAN-DARDKVYHILDSARDMIAQTEAEKD 224 I+ QE+ KL EL + E+ + LRDA DARDK+ I R++ + A K+ Sbjct: 227 IYNQELNETRAKLDELSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMKE 286 Query: 225 ATKQ 236 +Q Sbjct: 287 EKEQ 290
>SMC3_PONPY (Q5R4K5) Structural maintenance of chromosome 3 (Chondroitin| sulfate proteoglycan 6) Length = 1217 Score = 27.7 bits (60), Expect = 7.8 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 7/64 (10%) Frame = +3 Query: 66 IHRQEVQ----KLQELEFN--SYAEQQKYLRDAN-DARDKVYHILDSARDMIAQTEAEKD 224 I+ QE+ KL EL + E+ + LRDA DARDK+ I R++ + A K+ Sbjct: 227 IYNQELNETRAKLDELSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMKE 286 Query: 225 ATKQ 236 +Q Sbjct: 287 EKEQ 290
>SMC3_MOUSE (Q9CW03) Structural maintenance of chromosome 3 (Chondroitin| sulfate proteoglycan 6) (Chromosome segregation protein SmcD) (Bamacan) (Basement membrane-associated chondroitin proteoglycan) (Mad member-interacting protein 1) Length = 1217 Score = 27.7 bits (60), Expect = 7.8 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 7/64 (10%) Frame = +3 Query: 66 IHRQEVQ----KLQELEFN--SYAEQQKYLRDAN-DARDKVYHILDSARDMIAQTEAEKD 224 I+ QE+ KL EL + E+ + LRDA DARDK+ I R++ + A K+ Sbjct: 227 IYNQELNETRAKLDELSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMKE 286 Query: 225 ATKQ 236 +Q Sbjct: 287 EKEQ 290
>SMC3_HUMAN (Q9UQE7) Structural maintenance of chromosome 3 (Chondroitin| sulfate proteoglycan 6) (Chromosome-associated polypeptide) (hCAP) (Bamacan) (Basement membrane-associated chondroitin proteoglycan) Length = 1217 Score = 27.7 bits (60), Expect = 7.8 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 7/64 (10%) Frame = +3 Query: 66 IHRQEVQ----KLQELEFN--SYAEQQKYLRDAN-DARDKVYHILDSARDMIAQTEAEKD 224 I+ QE+ KL EL + E+ + LRDA DARDK+ I R++ + A K+ Sbjct: 227 IYNQELNETRAKLDELSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMKE 286 Query: 225 ATKQ 236 +Q Sbjct: 287 EKEQ 290 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,298,502 Number of Sequences: 219361 Number of extensions: 671058 Number of successful extensions: 2562 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 2512 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2562 length of database: 80,573,946 effective HSP length: 74 effective length of database: 64,341,232 effective search space used: 1544189568 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
