ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal22i08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X82937.1|HVRNAJIP H.vulgare mRNA for jasmonate induced protein 591 e-166
2gb|AC163992.9| Mus musculus chromosome 1, clone RP23-193H10, com... 40 3.9
3ref|XM_457812.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 3.9
4ref|XM_781740.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 3.9
5emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS... 40 3.9
6emb|AL645823.12| Mouse DNA sequence from clone RP23-288I22 on ch... 40 3.9
7gb|AC021205.6| Homo sapiens BAC clone RP11-170N16 from 4, comple... 40 3.9
8gb|AC157217.2| Pan troglodytes BAC clone CH251-305B5 from chromo... 40 3.9

>emb|X82937.1|HVRNAJIP H.vulgare mRNA for jasmonate induced protein
          Length = 1334

 Score =  591 bits (298), Expect = e-166
 Identities = 298/298 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttacatcatgtcaggtgacctagttgatttaagtccagggcagttgcataagctagccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  cttacatcatgtcaggtgacctagttgatttaagtccagggcagttgcataagctagccg 126

                                                                       
Query: 61  atctgatccatcgacaagaagtccagaagcttcaagagctcgagttcaactcgtatgcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 atctgatccatcgacaagaagtccagaagcttcaagagctcgagttcaactcgtatgcag 186

                                                                       
Query: 121 agcaacaaaagtatctccgtgacgccaatgatgcccgcgataaggtgtatcacatccttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 agcaacaaaagtatctccgtgacgccaatgatgcccgcgataaggtgtatcacatccttg 246

                                                                       
Query: 181 acagtgcacgggacatgatagcacaaaccgaggctgagaaggatgccaccaagcaagata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 acagtgcacgggacatgatagcacaaaccgaggctgagaaggatgccaccaagcaagata 306

                                                                     
Query: 241 ttggcaaggatgtctatgactactgcaccaaggccatcggaatatctctccaattcat 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ttggcaaggatgtctatgactactgcaccaaggccatcggaatatctctccaattcat 364



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>gb|AC163992.9| Mus musculus chromosome 1, clone RP23-193H10, complete sequence
          Length = 198062

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     tagttgatttaagtccaggg 41
              ||||||||||||||||||||
Sbjct: 120328 tagttgatttaagtccaggg 120347



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>ref|XM_457812.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0C03498g)
            partial mRNA
          Length = 3774

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 228  accaagcaagatattggcaa 247
            ||||||||||||||||||||
Sbjct: 1747 accaagcaagatattggcaa 1766



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>ref|XM_781740.1| PREDICTED: Strongylocentrotus purpuratus similar to aldehyde
           dehydrogenase 2, like (LOC581754), mRNA
          Length = 1767

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 49  ataagctagccgatctgatc 68
           ||||||||||||||||||||
Sbjct: 527 ataagctagccgatctgatc 546



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>emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS767 of Debaryomyces
              hansenii
          Length = 1592360

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 228    accaagcaagatattggcaa 247
              ||||||||||||||||||||
Sbjct: 281073 accaagcaagatattggcaa 281092



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>emb|AL645823.12| Mouse DNA sequence from clone RP23-288I22 on chromosome 11 Contains the
              Gabra6 gene for subunit alpha 6 gamma-aminobutyric acid
              (GABA-A) receptor, complete sequence
          Length = 132024

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 234    caagatattggcaaggatgt 253
              ||||||||||||||||||||
Sbjct: 120263 caagatattggcaaggatgt 120244



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>gb|AC021205.6| Homo sapiens BAC clone RP11-170N16 from 4, complete sequence
          Length = 178917

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 279   ggaatatctctccaattcat 298
             ||||||||||||||||||||
Sbjct: 97894 ggaatatctctccaattcat 97913



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>gb|AC157217.2| Pan troglodytes BAC clone CH251-305B5 from chromosome unknown, complete
             sequence
          Length = 159245

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 279   ggaatatctctccaattcat 298
             ||||||||||||||||||||
Sbjct: 67066 ggaatatctctccaattcat 67047


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,900,378
Number of Sequences: 3902068
Number of extensions: 1900378
Number of successful extensions: 36104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36091
Number of HSP's gapped (non-prelim): 13
length of query: 298
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 276
effective length of database: 17,147,199,772
effective search space: 4732627137072
effective search space used: 4732627137072
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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