>DRD5_HUMAN (P21918) D(1B) dopamine receptor (D(5) dopamine receptor) (D1beta|
           dopamine receptor)
          Length = 477

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +2

Query: 179 CWKPGGIQGSAVPFCSGR-EGPDHG 250
           CW P  I    VPFCSG  EGP  G
Sbjct: 308 CWLPFFILNCMVPFCSGHPEGPPAG 332

>NICN1_HUMAN (Q9BSH3) Nicolin-1 (NPCEDRG)|
          Length = 213

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -3

Query: 308 TLRSDDCLLPDEFIGRPFVPHDQDPLAHYKRVL-HSLECHRASSIQSKLIVVFATPSPLW 132
           T   D CL+PD        PH ++    Y  +  H + C  A    S+L ++   PSPLW
Sbjct: 76  TCLRDYCLMPD--------PHSEEGAQEYVSLFKHQMLCDMARI--SELRLILRQPSPLW 125

>RAS1_HYDMA (P51539) Ras-like protein RAS1|
          Length = 194

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = +3

Query: 75  FHNAALRKRRKD------VTEHTDVPKRTGSSKDNNELALDAGSP 191
           F   ALR +  D      V    D+PKR  S+KD N+ AL  G P
Sbjct: 102 FRTQALRVKDADKVPMVLVGNKVDLPKRDVSTKDGNDKALSFGIP 146

>DAPF_MYCTU (P63897) Diaminopimelate epimerase (EC 5.1.1.7) (DAP epimerase)|
          Length = 289

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 171 ALDAGSPVAFKGVQYPFVVGERVL 242
           ALD G+PV+F G Q+P  V   VL
Sbjct: 180 ALDVGAPVSFDGAQFPDGVNVEVL 203

>DAPF_MYCBO (P63898) Diaminopimelate epimerase (EC 5.1.1.7) (DAP epimerase)|
          Length = 289

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 171 ALDAGSPVAFKGVQYPFVVGERVL 242
           ALD G+PV+F G Q+P  V   VL
Sbjct: 180 ALDVGAPVSFDGAQFPDGVNVEVL 203

>RS6_XANOR (Q5H051) 30S ribosomal protein S6|
          Length = 143

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 45  VVKMEDDRRLFHNAALRKRRKDVTEHTDVPKRTGSSKDNNELA 173
           ++K +D++   H  + R+RR D  E  DVP  T +  DN E A
Sbjct: 103 IMKSKDEKGDKHERSERRRRDD--EEGDVPAATDTDGDNAEAA 143

>RS6_XANOM (Q2P328) 30S ribosomal protein S6|
          Length = 143

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 45  VVKMEDDRRLFHNAALRKRRKDVTEHTDVPKRTGSSKDNNELA 173
           ++K +D++   H  + R+RR D  E  DVP  T +  DN E A
Sbjct: 103 IMKSKDEKGDKHERSERRRRDD--EEGDVPAATDTDGDNAEAA 143

>RPSK_BACSU (P12254) RNA polymerase sigma-K factor precursor (Sigma-27)|
          Length = 294

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 72  LFHNAALRKRRKDVTEHTDVPKRTGSSKDNNELAL 176
           L H  AL+K +KDV+ H  +    G  K+ NE++L
Sbjct: 168 LMHLRALKKTKKDVSLHDPI----GQDKEGNEISL 198

>IF2_LACAC (Q5FJN6) Translation initiation factor IF-2|
          Length = 877

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +3

Query: 81  NAALRKRRKDVTEHTDVPKRTGSSKDNNELALDAGSPVAFKGVQYPFVVGERVL 242
           N   +K +K+  EH   PK+  S KDN +   ++ +    + V+   V+G ++L
Sbjct: 143 NREAQKAKKEYHEHLKHPKKEQSEKDNKKTVKESNNKKVEQQVEKK-VIGPKIL 195

>Y2095_RHIME (Q52999) Hypothetical protein R02095|
          Length = 1029

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 73   CFITLLFGSAGKM*PSIQMCQSGLGVAKTTMSLLWMLE 186
            C    L G AGK+ P+I++    +G  + T    W+ E
Sbjct: 937  CMHATLLGLAGKIEPAIEVVNEAIGRGEETGHAYWLAE 974

>TRX_DROVI (Q24742) Protein trithorax|
          Length = 3828

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +3

Query: 126  DVPKRTGSSKDNNELALDAGSPVAFKGVQYPFVVGERVLIMGNKRTPDKFVGKEAVITSQ 305
            DV K+T ++   +   LD GS  AFK  +    + E VL+  N+R+  +      +   Q
Sbjct: 2096 DVLKKTDTAPTRSWPKLDGGSVAAFKRRKLSKNIAEGVLLSLNQRSKKEMATVAGITRRQ 2155

Query: 306  CLNG 317
             + G
Sbjct: 2156 SVCG 2159

>GAT25_ARATH (Q8H1G0) GATA transcription factor 25 (ZIM-like 2 protein)|
          Length = 302

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 12/60 (20%)
 Frame = +3

Query: 123 TDVPKRTGSSKDNNELALDAGS------PVAFKGVQYPF--VVGERV----LIMGNKRTP 266
           TD+P   G+  DN    +D GS       ++F+G  Y F  V+ E+V    L++G +  P
Sbjct: 57  TDIPSHPGNVTDNRGEVVDRGSEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELP 116


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,501,079
Number of Sequences: 219361
Number of extensions: 999511
Number of successful extensions: 2964
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2963
length of database: 80,573,946
effective HSP length: 90
effective length of database: 60,831,456
effective search space used: 1459954944
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)