ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal22h09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468527.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2101 Score = 176 bits (89), Expect = 3e-41 Identities = 119/129 (92%) Strand = Plus / Plus Query: 207 gtgcagtacccttttgtagtgggcgagagggtcctgatcatggggaacaaaaggacgccc 266 |||||||| || |||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct: 1410 gtgcagtatccatttgtagtgggcgagagggtcctgatcatgggaaacagaaggacgcct 1469 Query: 267 gataaattcgtcgggaaggaggcagtcatcacttcgcagtgtctgaatggctggtatctt 326 |||||||| || |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 1470 gataaatttgttgggaaggaggcagtcatcacatcgcagtgcttgaatggctggtatctt 1529 Query: 327 gtgaaggcg 335 ||||||||| Sbjct: 1530 gtgaaggcg 1538 Score = 115 bits (58), Expect = 1e-22 Identities = 98/110 (89%), Gaps = 1/110 (0%) Strand = Plus / Plus Query: 9 tgttccctaatctcgctttgagnagcagtagccacggtggtgaagatggaggatgatagg 68 |||| |||||||||||||| || ||||||||| || |||||||||||||| ||||||||| Sbjct: 1213 tgtttcctaatctcgctttaag-agcagtagctacagtggtgaagatggaagatgatagg 1271 Query: 69 agactgtttcataacgctgctcttcggaagcgcaggaaagatgtgaccga 118 ||||| |||||||| ||||||||||| || | ||||||||| |||||||| Sbjct: 1272 agactctttcataatgctgctcttcgcaaacacaggaaagaggtgaccga 1321
>dbj|AK069290.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013J02, full insert sequence Length = 2101 Score = 176 bits (89), Expect = 3e-41 Identities = 119/129 (92%) Strand = Plus / Plus Query: 207 gtgcagtacccttttgtagtgggcgagagggtcctgatcatggggaacaaaaggacgccc 266 |||||||| || |||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct: 1410 gtgcagtatccatttgtagtgggcgagagggtcctgatcatgggaaacagaaggacgcct 1469 Query: 267 gataaattcgtcgggaaggaggcagtcatcacttcgcagtgtctgaatggctggtatctt 326 |||||||| || |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 1470 gataaatttgttgggaaggaggcagtcatcacatcgcagtgcttgaatggctggtatctt 1529 Query: 327 gtgaaggcg 335 ||||||||| Sbjct: 1530 gtgaaggcg 1538 Score = 115 bits (58), Expect = 1e-22 Identities = 98/110 (89%), Gaps = 1/110 (0%) Strand = Plus / Plus Query: 9 tgttccctaatctcgctttgagnagcagtagccacggtggtgaagatggaggatgatagg 68 |||| |||||||||||||| || ||||||||| || |||||||||||||| ||||||||| Sbjct: 1213 tgtttcctaatctcgctttaag-agcagtagctacagtggtgaagatggaagatgatagg 1271 Query: 69 agactgtttcataacgctgctcttcggaagcgcaggaaagatgtgaccga 118 ||||| |||||||| ||||||||||| || | ||||||||| |||||||| Sbjct: 1272 agactctttcataatgctgctcttcgcaaacacaggaaagaggtgaccga 1321
>dbj|AK065885.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045A06, full insert sequence Length = 3391 Score = 176 bits (89), Expect = 3e-41 Identities = 119/129 (92%) Strand = Plus / Plus Query: 207 gtgcagtacccttttgtagtgggcgagagggtcctgatcatggggaacaaaaggacgccc 266 |||||||| || |||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct: 1409 gtgcagtatccatttgtagtgggcgagagggtcctgatcatgggaaacagaaggacgcct 1468 Query: 267 gataaattcgtcgggaaggaggcagtcatcacttcgcagtgtctgaatggctggtatctt 326 |||||||| || |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct: 1469 gataaatttgttgggaaggaggcagtcatcacatcgcagtgcttgaatggctggtatctt 1528 Query: 327 gtgaaggcg 335 ||||||||| Sbjct: 1529 gtgaaggcg 1537 Score = 115 bits (58), Expect = 1e-22 Identities = 98/110 (89%), Gaps = 1/110 (0%) Strand = Plus / Plus Query: 9 tgttccctaatctcgctttgagnagcagtagccacggtggtgaagatggaggatgatagg 68 |||| |||||||||||||| || ||||||||| || |||||||||||||| ||||||||| Sbjct: 1212 tgtttcctaatctcgctttaag-agcagtagctacagtggtgaagatggaagatgatagg 1270 Query: 69 agactgtttcataacgctgctcttcggaagcgcaggaaagatgtgaccga 118 ||||| |||||||| ||||||||||| || | ||||||||| |||||||| Sbjct: 1271 agactctttcataatgctgctcttcgcaaacacaggaaagaggtgaccga 1320
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 101 bits (51), Expect = 1e-18 Identities = 78/87 (89%) Strand = Plus / Minus Query: 32 agcagtagccacggtggtgaagatggaggatgataggagactgtttcataacgctgctct 91 ||||||||| || |||||||||||||| |||||||||||||| |||||||| |||||||| Sbjct: 35687225 agcagtagctacagtggtgaagatggaagatgataggagactctttcataatgctgctct 35687166 Query: 92 tcggaagcgcaggaaagatgtgaccga 118 ||| || | ||||||||| |||||||| Sbjct: 35687165 tcgcaaacacaggaaagaggtgaccga 35687139 Score = 83.8 bits (42), Expect = 3e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 252 aacaaaaggacgcccgataaattcgtcgggaaggaggcagtcatcacttcgcagtgtctg 311 |||| ||||||||| |||||||| || |||||||||||||||||||| |||||||| || Sbjct: 35686823 aacagaaggacgcctgataaatttgttgggaaggaggcagtcatcacatcgcagtgcttg 35686764 Query: 312 aatggctggt 321 |||||||||| Sbjct: 35686763 aatggctggt 35686754 Score = 69.9 bits (35), Expect = 5e-09 Identities = 41/43 (95%) Strand = Plus / Minus Query: 207 gtgcagtacccttttgtagtgggcgagagggtcctgatcatgg 249 |||||||| || ||||||||||||||||||||||||||||||| Sbjct: 35686957 gtgcagtatccatttgtagtgggcgagagggtcctgatcatgg 35686915
>dbj|AP004043.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1124_D06 Length = 102239 Score = 101 bits (51), Expect = 1e-18 Identities = 78/87 (89%) Strand = Plus / Minus Query: 32 agcagtagccacggtggtgaagatggaggatgataggagactgtttcataacgctgctct 91 ||||||||| || |||||||||||||| |||||||||||||| |||||||| |||||||| Sbjct: 47839 agcagtagctacagtggtgaagatggaagatgataggagactctttcataatgctgctct 47780 Query: 92 tcggaagcgcaggaaagatgtgaccga 118 ||| || | ||||||||| |||||||| Sbjct: 47779 tcgcaaacacaggaaagaggtgaccga 47753 Score = 83.8 bits (42), Expect = 3e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 252 aacaaaaggacgcccgataaattcgtcgggaaggaggcagtcatcacttcgcagtgtctg 311 |||| ||||||||| |||||||| || |||||||||||||||||||| |||||||| || Sbjct: 47437 aacagaaggacgcctgataaatttgttgggaaggaggcagtcatcacatcgcagtgcttg 47378 Query: 312 aatggctggt 321 |||||||||| Sbjct: 47377 aatggctggt 47368 Score = 69.9 bits (35), Expect = 5e-09 Identities = 41/43 (95%) Strand = Plus / Minus Query: 207 gtgcagtacccttttgtagtgggcgagagggtcctgatcatgg 249 |||||||| || ||||||||||||||||||||||||||||||| Sbjct: 47571 gtgcagtatccatttgtagtgggcgagagggtcctgatcatgg 47529
>gb|AC022167.7| Homo sapiens chromosome 16 clone RP11-77H9, complete sequence Length = 180705 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 172 ctctggatgctggaagcccggtggc 196 ||||||||| ||||||||||||||| Sbjct: 139024 ctctggatggtggaagcccggtggc 139048
>gb|AY106071.1| Zea mays PCO141993 mRNA sequence Length = 1300 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 ccacggtggtgaagatggagg 60 ||||||||||||||||||||| Sbjct: 587 ccacggtggtgaagatggagg 567
>ref|XM_630036.1| Dictyostelium discoideum hypothetical protein (DDB0183806), partial mRNA Length = 3243 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gcatacagatgtgccaaagc 138 |||||||||||||||||||| Sbjct: 70 gcatacagatgtgccaaagc 89
>emb|AL158080.21| Human DNA sequence from clone RP13-399N6 on chromosome 10 Contains part of the TCF8 gene for transcription factor 8 (represses interleukin 2 expression) (BZP,ZEB,ZEB1,AREB6,ZFHEP,NIL-2A,ZFHX1A,NIL-2-A), complete sequence Length = 64135 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 gaggatgataggagactgtt 76 |||||||||||||||||||| Sbjct: 46271 gaggatgataggagactgtt 46290
>gb|AC091973.4| Homo sapiens chromosome 5 clone RP11-51B6, complete sequence Length = 156257 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 aacaatgagcttgctctgga 178 |||||||||||||||||||| Sbjct: 140900 aacaatgagcttgctctgga 140881
>gb|AC109466.2| Homo sapiens chromosome 5 clone RP11-308N24, complete sequence Length = 153815 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 aacaatgagcttgctctgga 178 |||||||||||||||||||| Sbjct: 81546 aacaatgagcttgctctgga 81565
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 143 tgggagtagcaaagacaacaatgagctt 170 ||||||||||| ||||||| |||||||| Sbjct: 33405027 tgggagtagcagagacaaccatgagctt 33405000
>gb|AF331670.1| Oryzias latipes ZPAX (ZPAX) gene, complete cds Length = 5226 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 gcaggaaagatgtgaccgag 119 |||||||||||||||||||| Sbjct: 4983 gcaggaaagatgtgaccgag 4964
>dbj|AP003345.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0415A04 Length = 160669 Score = 40.1 bits (20), Expect = 4.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 143 tgggagtagcaaagacaacaatgagctt 170 ||||||||||| ||||||| |||||||| Sbjct: 81193 tgggagtagcagagacaaccatgagctt 81166
>gb|AF225898.1|AF225898 Homo sapiens BAC clone 13d21, complete sequence Length = 198084 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 gaggatgataggagactgtt 76 |||||||||||||||||||| Sbjct: 116099 gaggatgataggagactgtt 116118
>gb|AC005877.3|AC005877 citb_19_o_18, complete sequence Length = 163028 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 gaggatgataggagactgtt 76 |||||||||||||||||||| Sbjct: 141315 gaggatgataggagactgtt 141296 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,337,808 Number of Sequences: 3902068 Number of extensions: 2337808 Number of successful extensions: 38632 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 38586 Number of HSP's gapped (non-prelim): 43 length of query: 346 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 324 effective length of database: 17,147,199,772 effective search space: 5555692726128 effective search space used: 5555692726128 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
