ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal22g15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK061852.1| Oryza sativa (japonica cultivar-group) cDNA clon... 303 2e-79
2gb|AY104267.1| Zea mays PCO085704 mRNA sequence 293 2e-76
3gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome... 90 5e-15
4gb|AY023245.1| Oryza sativa microsatellite MRG5570 containing (G... 54 3e-04
5gb|BC007632.1| Homo sapiens RIMS binding protein 2, mRNA (cDNA c... 42 1.1
6ref|NM_015347.3| Homo sapiens RIMS binding protein 2 (RIMBP2), mRNA 42 1.1
7gb|AC063926.36| Homo sapiens 12 BAC RP11-117L5 (Roswell Park Can... 42 1.1
8dbj|AB002316.1| Human mRNA for KIAA0318 gene, partial cds 42 1.1
9ref|NM_126328.2| Arabidopsis thaliana unknown protein AT2G02730 ... 40 4.3
10ref|NM_201673.1| Arabidopsis thaliana unknown protein AT2G02730 ... 40 4.3
11gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 4.3
12ref|XM_381375.1| Gibberella zeae PH-1 chromosome 1 conserved hyp... 40 4.3
13emb|Z77664.1|CEF53H10 Caenorhabditis elegans Cosmid F53H10, comp... 40 4.3
14gb|AC127696.4| Mus musculus BAC clone RP23-459J11 from chromosom... 40 4.3
15tpg|BK005224.1| TPA: TPA_inf: Gibberella zeae glutamine:fructose... 40 4.3
16gb|AC002521.3| Arabidopsis thaliana chromosome 2 clone T20F6 map... 40 4.3
17dbj|AK038340.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ... 40 4.3
18ref|NM_073368.4| Caenorhabditis elegans F53H10.2 (F53H10.2) mRNA... 40 4.3
19emb|BX819013.1|CNS0A9UP Arabidopsis thaliana Full-length cDNA Co... 40 4.3
20gb|BT005277.1| Arabidopsis thaliana At2g02730 mRNA, complete cds 40 4.3
21gb|AY088742.1| Arabidopsis thaliana clone 93828 mRNA, complete s... 40 4.3
22dbj|AK119082.1| Arabidopsis thaliana At2g02730 mRNA for unknown ... 40 4.3
23dbj|AK107318.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.3
24gb|AC102304.6| Mus musculus chromosome 7, clone RP24-403P14, com... 40 4.3
25emb|BX957279.13| Zebrafish DNA sequence from clone DKEY-218N20 i... 40 4.3
26emb|BX511258.6| Zebrafish DNA sequence from clone CH211-81E5 in ... 40 4.3
27emb|AL929452.9| Mouse DNA sequence from clone RP23-345L15 on chr... 40 4.3 
>dbj|AK061852.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-F09, full
           insert sequence
          Length = 1415

 Score =  303 bits (153), Expect = 2e-79
 Identities = 279/321 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaggtcctcatcctcgtcggcgcaggcctgacggggtcgatcgtgcttcggaatggccg 60
           |||||||||||||||||||||||||||  ||||| | ||||||||||| |||||||||||
Sbjct: 180 caaggtcctcatcctcgtcggcgcagggttgacgagctcgatcgtgctgcggaatggccg 239

                                                                       
Query: 61  cctgtcggatgtattggcggagctccaggagctcatgaagggcgtaaatcaaggagaagg 120
            || || || || ||||||||||| |||||||| ||||| || ||||| |||||||||||
Sbjct: 240 gctatctgacgtgttggcggagcttcaggagcttatgaaaggtgtaaaccaaggagaagg 299

                                                                       
Query: 121 ttcgagcgcctatgacatggctcttatccaagctcagattcggcatttagcccaagaagt 180
           |||||| ||||||||||| || ||| | ||| ||||||||||  ||||||| ||||||||
Sbjct: 300 ttcgagtgcctatgacatcgcccttcttcaatctcagattcgaaatttagcacaagaagt 359

                                                                       
Query: 181 cagagatttaactttgtcaaagcccattaccatattgagtggcaaatcggactccggagg 240
            |||||||| ||| | |||| ||| |||||||||||||||||||| || ||||| |||||
Sbjct: 360 tagagatttgactatatcaaggcctattaccatattgagtggcaactccgactctggagg 419

                                                                       
Query: 241 tggtttatcgtcctacatactgccagcagctgcagttggagcattaggttattgctatat 300
             ||||||| |||||||||||||| |||||||||||||||||| | ||||| ||||||||
Sbjct: 420 cagtttatcctcctacatactgcctgcagctgcagttggagcaatgggttactgctatat 479

                                
Query: 301 gtggtgtaagggatggtcctt 321
           |||||| ||||||| ||||||
Sbjct: 480 gtggtggaagggattgtcctt 500
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>gb|AY104267.1| Zea mays PCO085704 mRNA sequence
          Length = 1009

 Score =  293 bits (148), Expect = 2e-76
 Identities = 271/312 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaggtcctcatcctcgtcggcgcaggcctgacggggtcgatcgtgcttcggaatggccg 60
           ||||||||||||||||||||| |||||  ||||||| |||||| |||| |||||||||||
Sbjct: 167 caaggtcctcatcctcgtcggtgcagggatgacgggctcgatcctgctgcggaatggccg 226

                                                                       
Query: 61  cctgtcggatgtattggcggagctccaggagctcatgaagggcgtaaatcaaggagaagg 120
           | | || ||||| ||||  || ||||||||| | |||||||| ||||||||||||   | 
Sbjct: 227 cttatctgatgtgttgggagaactccaggagattatgaagggtgtaaatcaaggaactgc 286

                                                                       
Query: 121 ttcgagcgcctatgacatggctcttatccaagctcagattcggcatttagcccaagaagt 180
           |||| |  |||||||||| || ||||| ||||||||||||||| ||||||||||||||||
Sbjct: 287 ttcgggtccctatgacattgcacttattcaagctcagattcggaatttagcccaagaagt 346

                                                                       
Query: 181 cagagatttaactttgtcaaagcccattaccatattgagtggcaaatcggactccggagg 240
           ||||||||| || ||||||||||||||||||||| ||| ||||||||| ||||| |||||
Sbjct: 347 cagagatttgacattgtcaaagcccattaccatactgaatggcaaatctgactcgggagg 406

                                                                       
Query: 241 tggtttatcgtcctacatactgccagcagctgcagttggagcattaggttattgctatat 300
             ||||||| |||||||||||||||||||| |||||||||||| | ||||||||||| ||
Sbjct: 407 cagtttatcatcctacatactgccagcagcagcagttggagcaatgggttattgctacat 466

                       
Query: 301 gtggtgtaaggg 312
           |||||| |||||
Sbjct: 467 gtggtggaaggg 478
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>gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0087J09, complete sequence
          Length = 153351

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 63/69 (91%)
 Strand = Plus / Plus

                                                                         
Query: 243   gtttatcgtcctacatactgccagcagctgcagttggagcattaggttattgctatatgt 302
             ||||||| |||||||||||||| |||||||||||||||||| | ||||| ||||||||||
Sbjct: 51911 gtttatcctcctacatactgcctgcagctgcagttggagcaatgggttactgctatatgt 51970

                      
Query: 303   ggtgtaagg 311
             |||| ||||
Sbjct: 51971 ggtggaagg 51979



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 75/87 (86%)
 Strand = Plus / Plus

                                                                         
Query: 155   cagattcggcatttagcccaagaagtcagagatttaactttgtcaaagcccattaccata 214
             ||||||||  ||||||| |||||||| |||||||| ||| | |||| ||| |||||||||
Sbjct: 51343 cagattcgaaatttagcacaagaagttagagatttgactatatcaaggcctattaccata 51402

                                        
Query: 215   ttgagtggcaaatcggactccggaggt 241
             ||||||||||| || ||||| ||||||
Sbjct: 51403 ttgagtggcaactccgactctggaggt 51429



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                 
Query: 87    aggagctcatgaagggcgtaaatcaaggagaaggttcgagcgcctatgacat 138
             ||||||| ||||| || ||||| ||||||||||||||||| |||||||||||
Sbjct: 51130 aggagcttatgaaaggtgtaaaccaaggagaaggttcgagtgcctatgacat 51181



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                        
Query: 1     caaggtcctcatcctcgtcggcgcagg 27
             |||||||||||||||||||||||||||
Sbjct: 50493 caaggtcctcatcctcgtcggcgcagg 50519



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                 
Query: 38    tcgatcgtgcttcggaatggccgcctgtcggatgtattggcggagctccagg 89
             ||||||||||| ||||||||||| || || || || ||||||||||| ||||
Sbjct: 50673 tcgatcgtgctgcggaatggccggctatctgacgtgttggcggagcttcagg 50724
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>gb|AY023245.1| Oryza sativa microsatellite MRG5570 containing (GGA)X8, closest to
           marker C67A, genomic sequence
          Length = 224

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 1   caaggtcctcatcctcgtcggcgcagg 27
           |||||||||||||||||||||||||||
Sbjct: 173 caaggtcctcatcctcgtcggcgcagg 147
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>gb|BC007632.1| Homo sapiens RIMS binding protein 2, mRNA (cDNA clone MGC:15831
           IMAGE:3507574), complete cds
          Length = 3902

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 264 cagcagctgcagttggagcat 284
           |||||||||||||||||||||
Sbjct: 436 cagcagctgcagttggagcat 456
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>ref|NM_015347.3| Homo sapiens RIMS binding protein 2 (RIMBP2), mRNA
          Length = 6322

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 264 cagcagctgcagttggagcat 284
           |||||||||||||||||||||
Sbjct: 189 cagcagctgcagttggagcat 209
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>gb|AC063926.36| Homo sapiens 12 BAC RP11-117L5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 192774

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 264   cagcagctgcagttggagcat 284
             |||||||||||||||||||||
Sbjct: 96422 cagcagctgcagttggagcat 96442
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>dbj|AB002316.1| Human mRNA for KIAA0318 gene, partial cds
          Length = 6322

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 264 cagcagctgcagttggagcat 284
           |||||||||||||||||||||
Sbjct: 189 cagcagctgcagttggagcat 209
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>ref|NM_126328.2| Arabidopsis thaliana unknown protein AT2G02730 transcript variant
           AT2G02730.1 mRNA, complete cds
          Length = 1514

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 278 ggagcattaggttattgctatatgtggt 305
           ||||||||||| ||| ||||||||||||
Sbjct: 392 ggagcattaggctatggctatatgtggt 419
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>ref|NM_201673.1| Arabidopsis thaliana unknown protein AT2G02730 transcript variant
           AT2G02730.2 mRNA, complete cds
          Length = 1292

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 278 ggagcattaggttattgctatatgtggt 305
           ||||||||||| ||| ||||||||||||
Sbjct: 395 ggagcattaggctatggctatatgtggt 422
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 17      gtcggcgcaggcctgacggg 36
               ||||||||||||||||||||
Sbjct: 3333828 gtcggcgcaggcctgacggg 3333847
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>ref|XM_381375.1| Gibberella zeae PH-1 chromosome 1 conserved hypothetical protein
           (FG01199.1) partial mRNA
          Length = 2070

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 80  gagctccaggagctcatgaagggc 103
           |||||||||||| |||||||||||
Sbjct: 958 gagctccaggagatcatgaagggc 981
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>emb|Z77664.1|CEF53H10 Caenorhabditis elegans Cosmid F53H10, complete sequence
          Length = 22916

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 180  tcagagatttaactttgtcaaagc 203
            |||||||||||||||| |||||||
Sbjct: 5252 tcagagatttaactttttcaaagc 5275
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>gb|AC127696.4| Mus musculus BAC clone RP23-459J11 from chromosome 7, complete sequence
          Length = 168580

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    tcagagatttaactttgtca 199
              ||||||||||||||||||||
Sbjct: 157558 tcagagatttaactttgtca 157577
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>tpg|BK005224.1| TPA: TPA_inf: Gibberella zeae glutamine:fructose-6-phosphate
            amidotransferase gene, complete cds
          Length = 2637

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 80   gagctccaggagctcatgaagggc 103
            |||||||||||| |||||||||||
Sbjct: 1525 gagctccaggagatcatgaagggc 1548
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>gb|AC002521.3| Arabidopsis thaliana chromosome 2 clone T20F6 map CIC11A04, complete
             sequence
          Length = 81004

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 278   ggagcattaggttattgctatatgtggt 305
             ||||||||||| ||| ||||||||||||
Sbjct: 60810 ggagcattaggctatggctatatgtggt 60837
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>dbj|AK038340.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length
           enriched library, clone:A130096H16 product:Warning:
           possibly chimeric clone, full insert sequence
          Length = 1538

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 205 cattaccatattgagtggcaaatc 228
           ||||||||||||| ||||||||||
Sbjct: 206 cattaccatattgtgtggcaaatc 183
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>ref|NM_073368.4| Caenorhabditis elegans F53H10.2 (F53H10.2) mRNA, complete cds
          Length = 3152

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 180  tcagagatttaactttgtcaaagc 203
            |||||||||||||||| |||||||
Sbjct: 2347 tcagagatttaactttttcaaagc 2324
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>emb|BX819013.1|CNS0A9UP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB37ZG02 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1296

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 278 ggagcattaggttattgctatatgtggt 305
           ||||||||||| ||| ||||||||||||
Sbjct: 398 ggagcattaggctatggctatatgtggt 425
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>gb|BT005277.1| Arabidopsis thaliana At2g02730 mRNA, complete cds
          Length = 831

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 278 ggagcattaggttattgctatatgtggt 305
           ||||||||||| ||| ||||||||||||
Sbjct: 301 ggagcattaggctatggctatatgtggt 328
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>gb|AY088742.1| Arabidopsis thaliana clone 93828 mRNA, complete sequence
          Length = 1194

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 278 ggagcattaggttattgctatatgtggt 305
           ||||||||||| ||| ||||||||||||
Sbjct: 393 ggagcattaggctatggctatatgtggt 420
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>dbj|AK119082.1| Arabidopsis thaliana At2g02730 mRNA for unknown protein, complete
           cds, clone: RAFL21-43-L15
          Length = 1177

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 278 ggagcattaggttattgctatatgtggt 305
           ||||||||||| ||| ||||||||||||
Sbjct: 384 ggagcattaggctatggctatatgtggt 411
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>dbj|AK107318.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-E03, full
            insert sequence
          Length = 2605

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 80   gagctccaggagctcatgaagggc 103
            |||||||||||| |||||||||||
Sbjct: 1256 gagctccaggagatcatgaagggc 1279
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>gb|AC102304.6| Mus musculus chromosome 7, clone RP24-403P14, complete sequence
          Length = 153206

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 180    tcagagatttaactttgtca 199
              ||||||||||||||||||||
Sbjct: 129770 tcagagatttaactttgtca 129751
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>emb|BX957279.13| Zebrafish DNA sequence from clone DKEY-218N20 in linkage group 19,
              complete sequence
          Length = 198752

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 283    attaggttattgctatatgt 302
              ||||||||||||||||||||
Sbjct: 145839 attaggttattgctatatgt 145820
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>emb|BX511258.6| Zebrafish DNA sequence from clone CH211-81E5 in linkage group 19,
             complete sequence
          Length = 200076

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   attaggttattgctatatgt 302
             ||||||||||||||||||||
Sbjct: 87974 attaggttattgctatatgt 87955
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>emb|AL929452.9| Mouse DNA sequence from clone RP23-345L15 on chromosome X, complete
              sequence
          Length = 221920

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 205    cattaccatattgagtggcaaatc 228
              ||||||||||||| ||||||||||
Sbjct: 139785 cattaccatattgtgtggcaaatc 139762


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,174,330
Number of Sequences: 3902068
Number of extensions: 2174330
Number of successful extensions: 48111
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48061
Number of HSP's gapped (non-prelim): 49
length of query: 324
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 302
effective length of database: 17,147,199,772
effective search space: 5178454331144
effective search space used: 5178454331144
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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