>TL30_ARATH (O49292) Thylakoid lumenal 29.8 kDa protein, chloroplast precursor|
          Length = 274

 Score =  106 bits (264), Expect = 3e-23
 Identities = 53/89 (59%), Positives = 58/89 (65%), Gaps = 15/89 (16%)
 Frame = +3

Query: 225 SVLGFAGDGLAAAKQGPLAGRIPGLSGPDQNG---------------WRTYRRPDEKSGG 359
           + L F  +GLA  KQG LAGR+PGLS PD+ G                 TYRRPDEKSGG
Sbjct: 60  TALAFPREGLAVVKQGLLAGRVPGLSEPDEEGSFHSVLDSSSSCLALTLTYRRPDEKSGG 119

Query: 360 HGVGWSPIIPYSFKVPDGWEETPVSIADL 446
           HGVGWSPIIPY+F VP  W E PVSIADL
Sbjct: 120 HGVGWSPIIPYAFSVPQDWNEVPVSIADL 148

>IF2_COREF (Q8FPA7) Translation initiation factor IF-2|
          Length = 964

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 298 SPGILPASGPCLAAARPSPAKPSTETP 218
           +PG + A  P  AAA+P+PAKP+   P
Sbjct: 91  TPGAVAAPKPGTAAAKPTPAKPAAPKP 117

>MNT_HUMAN (Q99583) Max-binding protein MNT (Protein ROX) (Myc antagonist MNT)|
          Length = 582

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -2

Query: 373 QPTPCPPDFSSGLRYVLQPF*SGPDSPGILPASGPCLAAARPSPAKPSTETP 218
           QP P PP   +      QP    P  P ++ A G  +    P P++P   TP
Sbjct: 99  QPLPPPPPLPAAA----QPLPLAPRQPALVGAPGLSIKEPAPLPSRPQVPTP 146

>PRP_PIG (Q95JC9) Basic proline-rich protein precursor [Contains:|
           Proline-rich peptide SP-A (PRP-SP-A); Proline-rich
           peptide SP-B (PRP-SP-B); Parotid hormone (PH-Ab)]
          Length = 676

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 19/54 (35%), Positives = 22/54 (40%)
 Frame = -2

Query: 379 GLQPTPCPPDFSSGLRYVLQPF*SGPDSPGILPASGPCLAAARPSPAKPSTETP 218
           G  P P PP+ S G  +  +P       PG  P  GP    ARP P  P    P
Sbjct: 41  GGPPRPPPPEESQGEGHQKRP-----RPPGDGPEQGPAPPGARPPPGPPPPGPP 89

>INO80_EMENI (Q5BAZ5) Putative DNA helicase ino80 (EC 3.6.1.-)|
          Length = 1612

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 22/68 (32%), Positives = 26/68 (38%)
 Frame = -2

Query: 373 QPTPCPPDFSSGLRYVLQPF*SGPDSPGILPASGPCLAAARPSPAKPSTETPQXXXXXXX 194
           QP   PP F         P  S   SP  LP + P L    P+PA PS  +PQ       
Sbjct: 40  QPPQTPPAFPQP-NLARSPHYSHAPSP--LPGALPPLNGGAPTPAHPSDPSPQYQAHSAA 96

Query: 193 XXXAFLLP 170
               + LP
Sbjct: 97  GTPQYPLP 104

>SF3B1_XENLA (O57683) Splicing factor 3B subunit 1 (Spliceosome-associated|
           protein 155) (SAP 155) (SF3b155) (Pre-mRNA-splicing
           factor SF3b 155 kDa subunit) (146 kDa nuclear protein)
          Length = 1307

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 19/81 (23%)
 Frame = +3

Query: 249 GLAAAKQGPLAGRI-PGLSGPD----QNGWRTYRRPDEKSGGHGVGWSPI---------- 383
           G+A   +G   G + PG SG      +N W    + +  + GHG GW+            
Sbjct: 267 GVATPGRGDTPGHVTPGHSGATSSARKNRWDETPKTERDTPGHGSGWAETPRTDRGGDSI 326

Query: 384 ----IPYSFKVPDGWEETPVS 434
                P + K    W+ETP S
Sbjct: 327 GETPTPGASKRKSRWDETPAS 347

>IF35_MOUSE (Q9DCH4) Eukaryotic translation initiation factor 3 subunit 5|
           (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f)
          Length = 361

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -2

Query: 370 PTPCPPDFSSGLRYVLQPF*SGPDSPGILPASGPCLAAARPSPAKPSTETP 218
           PTP     +S       P  + P +PG  PAS P   A  P+P++P    P
Sbjct: 38  PTPAATPAASPAPVSSDPAVAAPAAPGQTPASAPA-PAQTPAPSQPGPALP 87

>IF2_THEFY (Q47RV1) Translation initiation factor IF-2|
          Length = 955

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -2

Query: 382 MGLQPTPCPPDFSSGLRYVLQPF*SGP-DSPGILPASGPCLAAARPSPAKPSTETPQ 215
           MG +PTP PP  +SG     +P   GP   PG++P      A   P P  P  + P+
Sbjct: 170 MGTRPTPRPP--ASGGTGAPRP---GPRPHPGMMPPRPGASAGGPPRPQAPRPQAPR 221

>TRDN_CANFA (P82179) Triadin|
          Length = 700

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -2

Query: 334 RYVLQPF*SGPDSPG---ILPASGPCLAAARPSPAKPSTE 224
           RY++  F  G   PG    LP   P + A+RP+PA P+ E
Sbjct: 263 RYMIDMFVHGDLRPGQSPALPPPLPTVQASRPTPASPTLE 302

>KELC_DROME (Q04652) Ring canal kelch protein [Contains: Kelch short protein]|
          Length = 1477

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 30/115 (26%), Positives = 41/115 (35%), Gaps = 8/115 (6%)
 Frame = +3

Query: 66   PTKGRAPTVVRCGSGPNLSGSHEEEEQREGVMALVGRRNXXXXXXXXXXXCGVSV-LGFA 242
            P K  A +   C  G N S S     +  G  A +   N              S   G A
Sbjct: 1051 PVKNSASSFFSCLHGEN-SQSMTNIYKTSGTAAAMAAHNSPLTPNVSMERASRSASAGAA 1109

Query: 243  GDGLAAAKQGPLAGRIPGLSGPDQNGW-------RTYRRPDEKSGGHGVGWSPII 386
            G   AA ++   A  IP  S  + N         +T  +P ++SGG     SPI+
Sbjct: 1110 GSAAAAVEEHSAADSIPSSSNINANRTTGAIPKVKTANKPAKESGGSSTAASPIL 1164

>PB1_HUMAN (Q86U86) Protein polybromo-1 (hPB1) (Polybromo-1D) (BRG1-associated|
            factor 180) (BAF180)
          Length = 1689

 Score = 25.8 bits (55), Expect(2) = 5.4
 Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 9/52 (17%)
 Frame = -3

Query: 354  QTFRPACGMFSNHSD---------QGQTAQGSSLPVGPAWPPPGHHLQNQAP 226
            Q   P  GM   +            G  + GS  P+ P  PPP HHL    P
Sbjct: 1478 QQLTPVAGMMGGYPPGLPPLQGPVDGLVSMGSMQPLHPGGPPP-HHLPPGVP 1528



 Score = 21.6 bits (44), Expect(2) = 5.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 191  GQCIPPPNQGHHP 153
            GQ  PPP  G HP
Sbjct: 1568 GQQAPPPYPGPHP 1580

>K0310_HUMAN (O15027) Protein KIAA0310|
          Length = 2179

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -2

Query: 379  GLQPTPCPPDFSSGLRYVLQPF*SGPDSPGILPASGPCLAAARPSPAKPS 230
            G  P  CP   SS +  + +P   G   PG L  + P LA   PSP   S
Sbjct: 1720 GALPQQCPGTPSSEMEQLDRP---GLSQPGALGIANPLLAVPAPSPEHSS 1766

>VL2_HPV25 (P36753) Minor capsid protein L2|
          Length = 520

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 310 SGPDSPGILPASGPCLAAARPSPAKPSTETP 218
           SGPD   +LP     +A   P P  PST+TP
Sbjct: 123 SGPD---LLPGEVETIAEIHPGPVVPSTDTP 150

>ENAH_MOUSE (Q03173) Protein enabled homolog (NPC-derived proline-rich protein|
           1) (NDPP-1)
          Length = 802

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
 Frame = -2

Query: 442 SAIETGV--SSQPSGTLKL*GM-MGLQPTPCPPDFSSGLRYVLQ-PF*SGPDSPGILPAS 275
           SA E G+  +SQP+ +    G+ +G    P PP   SG  Y    P   GP  P  LP++
Sbjct: 517 SASEPGLQAASQPAESPTPQGLVLGPPAPPPPPPLPSGPAYASALPPPPGPPPPPPLPST 576

Query: 274 GPCLAAARPSPAKPSTETP 218
           GP      P P  P    P
Sbjct: 577 GP------PPPPPPPPPLP 589

>TRDN_HUMAN (Q13061) Triadin|
          Length = 728

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -2

Query: 334 RYVLQPF*SGPDSPGILPASGPCLA---AARPSPAKPSTE 224
           RY++  F  G   PG  PA  P L    A+RP+PA P+ E
Sbjct: 270 RYMIDIFVHGDLKPGQSPAIPPPLPTEQASRPTPASPALE 309

>VILI_DICDI (P36418) Protovillin (100 kDa actin-binding protein)|
          Length = 959

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = -2

Query: 349 FSSGLRYVLQPF*SGPDSPGILPASGPCL---AAARPSP-AKPSTETPQ 215
           + S L  +L    SGP SP +LP SG  L    AA P P   P+  TP+
Sbjct: 805 YKSKLSAILGSNNSGPASPIMLPTSGVTLKPTTAATPKPITTPTVTTPK 853

>DIAP3_MOUSE (Q9Z207) Protein diaphanous homolog 3 (Diaphanous-related formin-3)|
           (DRF3) (mDIA2) (p134mDIA2)
          Length = 1171

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -2

Query: 340 GLRYVLQPF*SGPDSPGILPASGPCLAAARPSPAKPSTETP 218
           G +  LQP   G   P  LP + P L+   P P  P    P
Sbjct: 536 GTKIPLQPSVEGEAGPSALPPAPPALSGGVPPPPPPPPPPP 576

>LMNA_XENLA (P11048) Lamin-A|
          Length = 665

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +3

Query: 261 AKQGPLAGRIPGLSGPDQNG---WRTYRRPDEKSGGHGVGWSPI 383
           A QG  +G + G SG   +     RTYR     SGG G+G SP+
Sbjct: 602 ASQG--SGLVTGSSGSSSSSVTLTRTYRSTGGTSGGSGLGESPV 643

>SASH1_HUMAN (O94885) SAM and SH3 domain-containing protein 1 (Proline-glutamate|
            repeat-containing protein)
          Length = 1247

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -2

Query: 373  QPTPCPPDFS-SGLRYVLQPF*SGPDSPGILPA-SGPCLAAARPSPAKPST 227
            QP P P   S   L   L P   GP   G LP+   PCL   R SPA P++
Sbjct: 983  QPPPVPAKKSRERLANGLHPVPMGPS--GALPSPDAPCLPVKRGSPASPTS 1031

>FOXE3_MOUSE (Q9QY14) Forkhead box protein E3|
          Length = 288

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 21/66 (31%), Positives = 30/66 (45%)
 Frame = -2

Query: 421 SSQPSGTLKL*GMMGLQPTPCPPDFSSGLRYVLQPF*SGPDSPGILPASGPCLAAARPSP 242
           S+ P+   +L  ++GLQP P  P           P  + PD+     A  PC AAA P  
Sbjct: 188 SAPPARLFRLDSLLGLQPEPPGPVAPE------PPCCAAPDA-----AFPPCAAAASPPL 236

Query: 241 AKPSTE 224
             P++E
Sbjct: 237 YSPASE 242

>TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Tara)|
            (Trio-associated repeat on actin)
          Length = 2014

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = +3

Query: 264  KQGPLAGRIPGLSGPDQNG-WRTYRRPDEKSGGHGVGW 374
            K+GP  G  P L GP   G WR   +   +  GH   W
Sbjct: 1114 KEGPSLGGWPELEGPSLEGIWRGPPQEHREQWGHSEAW 1151


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,851,970
Number of Sequences: 219361
Number of extensions: 1366326
Number of successful extensions: 4690
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 4346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4674
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)