ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal22f10 |
|---|---|
| Clone Library Name | barley_pub |
>PRIO_BOSTR (Q5UJG7) Major prion protein precursor (PrP) (CD230 antigen)| Length = 264 Score = 30.4 bits (67), Expect = 1.1 Identities = 17/51 (33%), Positives = 18/51 (35%) Frame = -1 Query: 379 WRSPCRGSWACP*ALPNPSLACNHGRGWR*RAQQHGSGHWRWRPATGSWRQ 227 W P GSW P HG GW Q HG G W G W + Sbjct: 68 WGQPHGGSWGQP---HGGGWGQPHGGGW---GQPHGGGGWGQGGTHGQWNK 112
>PRIO_TRAIM (Q5UJG3) Major prion protein precursor (PrP) (CD230 antigen)| Length = 264 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/51 (31%), Positives = 17/51 (33%) Frame = -1 Query: 379 WRSPCRGSWACP*ALPNPSLACNHGRGWR*RAQQHGSGHWRWRPATGSWRQ 227 W P G W P HG GW Q HG G W G W + Sbjct: 76 WGQPHGGGWGQP-----------HGGGW---GQPHGGGGWGQGGTHGQWNK 112
>PRIO_BOSIN (Q5UJI7) Major prion protein precursor (PrP) (CD230 antigen)| Length = 264 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/51 (31%), Positives = 17/51 (33%) Frame = -1 Query: 379 WRSPCRGSWACP*ALPNPSLACNHGRGWR*RAQQHGSGHWRWRPATGSWRQ 227 W P G W P HG GW Q HG G W G W + Sbjct: 76 WGQPHGGGWGQP-----------HGGGW---GQPHGGGGWGQGGTHGQWNK 112
>PRIO_BOSGA (Q5UJH0) Major prion protein precursor (PrP) (CD230 antigen)| Length = 264 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/51 (31%), Positives = 17/51 (33%) Frame = -1 Query: 379 WRSPCRGSWACP*ALPNPSLACNHGRGWR*RAQQHGSGHWRWRPATGSWRQ 227 W P G W P HG GW Q HG G W G W + Sbjct: 76 WGQPHGGGWGQP-----------HGGGW---GQPHGGGGWGQGGTHGQWNK 112
>PRIO_BISBI (Q5UAF1) Major prion protein precursor (PrP) (CD230 antigen)| Length = 264 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/51 (31%), Positives = 17/51 (33%) Frame = -1 Query: 379 WRSPCRGSWACP*ALPNPSLACNHGRGWR*RAQQHGSGHWRWRPATGSWRQ 227 W P G W P HG GW Q HG G W G W + Sbjct: 76 WGQPHGGGWGQP-----------HGGGW---GQPHGGGGWGQGGTHGQWNK 112
>PRIO_AILME (Q6EH52) Major prion protein precursor (PrP) (CD230 antigen)| Length = 264 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/51 (31%), Positives = 17/51 (33%) Frame = -1 Query: 379 WRSPCRGSWACP*ALPNPSLACNHGRGWR*RAQQHGSGHWRWRPATGSWRQ 227 W P G W P HG GW Q HG G W G W + Sbjct: 76 WGQPHGGGWGQP-----------HGGGW---GQPHGGGGWGQGGTHGQWNK 112
>PRIO1_TRAST (P40242) Major prion protein 1 precursor (PrP) (Major| scrapie-associated fibril protein 1) (CD230 antigen) Length = 264 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/51 (31%), Positives = 17/51 (33%) Frame = -1 Query: 379 WRSPCRGSWACP*ALPNPSLACNHGRGWR*RAQQHGSGHWRWRPATGSWRQ 227 W P G W P HG GW Q HG G W G W + Sbjct: 76 WGQPHGGGWGQP-----------HGGGW---GQPHGGGGWGQGGTHGQWNK 112
>PRIO1_BOVIN (P10279) Major prion protein 1 precursor (PrP) (Major| scrapie-associated fibril protein 1) (CD230 antigen) Length = 264 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/51 (31%), Positives = 17/51 (33%) Frame = -1 Query: 379 WRSPCRGSWACP*ALPNPSLACNHGRGWR*RAQQHGSGHWRWRPATGSWRQ 227 W P G W P HG GW Q HG G W G W + Sbjct: 76 WGQPHGGGWGQP-----------HGGGW---GQPHGGGGWGQGGTHGQWNK 112
>PRIO2_TRAST (P40243) Major prion protein 2 precursor (PrP) (Major| scrapie-associated fibril protein 2) (CD230 antigen) Length = 256 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/51 (31%), Positives = 17/51 (33%) Frame = -1 Query: 379 WRSPCRGSWACP*ALPNPSLACNHGRGWR*RAQQHGSGHWRWRPATGSWRQ 227 W P G W P HG GW Q HG G W G W + Sbjct: 68 WGQPHVGGWGQP-----------HGGGW---GQPHGGGGWGQGGTHGQWNK 104
>MAST2_HUMAN (Q6P0Q8) Microtubule-associated serine/threonine-protein kinase 2 (EC| 2.7.11.1) Length = 1798 Score = 28.5 bits (62), Expect = 4.1 Identities = 22/52 (42%), Positives = 27/52 (51%) Frame = -3 Query: 374 LALSRILGMSLSTPKSIPGM*PRERLALTSAAAWERPLAVAASHRVLAASRR 219 L LS LG LS PKS PR L +A + A+AAS + LA SR+ Sbjct: 1378 LHLSPPLGRQLSRPKSAEP--PRSPLLKRVQSAEKLAAALAASEKKLATSRK 1427
>TCF19_PIG (Q9TSV4) Transcription factor 19 (Transcription factor SC1)| Length = 346 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/28 (35%), Positives = 13/28 (46%) Frame = +3 Query: 231 RQDPVAGRHRQWPLPCCCARQRQPLPWL 314 R P AG PCCC Q + + W+ Sbjct: 282 RAPPAAGGGEPCAAPCCCLPQEETVAWV 309
>CH10_ACTAC (P46399) 10 kDa chaperonin (Protein Cpn10) (groES protein)| Length = 96 Score = 27.7 bits (60), Expect = 7.0 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = -2 Query: 357 PGHVLEHSQIHPWHVTTGE 301 PG +LE+ +HP HV G+ Sbjct: 45 PGRLLENGSVHPMHVKVGD 63
>RUVA_BURS3 (Q39JJ0) Holliday junction ATP-dependent DNA helicase ruvA (EC| 3.6.1.-) Length = 193 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = +1 Query: 226 LAAKTRWLAATANGRSHAAALVNANLSRGYMPGMDLGVLKDMP 354 L A LA A+ HA ++NA L+ GY L +K++P Sbjct: 132 LGADLGELAGAASPSDHATDILNALLALGYSEKEGLAAIKNVP 174
>Y856_TREPA (O83828) Hypothetical UPF0164 protein TP0856 precursor| Length = 325 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = +2 Query: 296 PTSPVVTCQGWIWECSRTCPGSATG 370 P SP V C+ +C +TC G TG Sbjct: 223 PGSPFVLCRATGEQCCKTCSGRCTG 247
>DAB_DROME (P98081) Protein disabled| Length = 2224 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -3 Query: 305 ERLALTSAAAWERPLAVAASHRVLAASRR 219 E AL +W+RP + A + R LA SRR Sbjct: 1820 EEPALPGQKSWKRPASAAETERRLAESRR 1848
>DLL1_HUMAN (O00548) Delta-like protein 1 precursor (Drosophila Delta homolog| 1) (Delta1) (H-Delta-1) Length = 723 Score = 27.3 bits (59), Expect = 9.2 Identities = 18/68 (26%), Positives = 25/68 (36%) Frame = +2 Query: 170 CASGAQQRSATCATSGHACLXXXXXXXXXXXXXXXXXXXSSTPTSPVVTCQGWIWECSRT 349 C+S A C G A L +S+P + TC+ + + S T Sbjct: 409 CSSSPCSNGAKCVDLGDAYLCRCQAGFSGRHCDDNVDDCASSPCANGGTCRDGVNDFSCT 468 Query: 350 CPGSATGR 373 CP TGR Sbjct: 469 CPPGYTGR 476
>Y2658_MYCTU (P71955) Hypothetical protein Rv2658c/MT2734.1| Length = 120 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%) Frame = +3 Query: 249 GRHRQWPLPCCCARQRQPLPWLHAR---DGFGS 338 GRH +W L C R+ P+ + A DGFG+ Sbjct: 49 GRHIEWKLECRACRKYAPISEMTAAAILDGFGA 81 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,019,669 Number of Sequences: 219361 Number of extensions: 730215 Number of successful extensions: 2000 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 1967 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1999 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
