| Clone Name | baal22f09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_465260.1| Oryza sativa (japonica cultivar-group), mRNA Length = 468 Score = 412 bits (208), Expect = e-112 Identities = 340/384 (88%) Strand = Plus / Plus Query: 127 ctcgctttcctgctggccgcggccccggcggccgaggcttggacgggggagatccgcggc 186 ||||| || ||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 64 ctcgccttgctgctggtagcggccccggcggccgaggcgtggacgggggagatccgcggc 123 Query: 187 cgcgtcgtctgcgacgtctgcgcggactctgccatcggccccgaggaccacgtcctcgaa 246 | |||||||||||||||||||| |||| | |||||||||||||||||||||||||||||| Sbjct: 124 cacgtcgtctgcgacgtctgcggggacgccgccatcggccccgaggaccacgtcctcgaa 183 Query: 247 ggcgctgaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccaggcg 306 || || |||||||| || || |||||||||| ||||||||| || |||||||||||||| Sbjct: 184 ggtgccgaggttgccgtcctctgcatcacgagatctggtgaagttatcaactaccaggcc 243 Query: 307 ttcacaaactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccgatgg 366 |||||||||| |||||||||||||| ||||| ||||| ||||| ||||| ||||| ||| Sbjct: 244 ttcacaaactccaagggtgtctacattgttgcggagacgatgccagagagtgaccgttgg 303 Query: 367 gattcgtgcctggcgaggcccatcagcagcttccaccagcattgcaccaggaggggcgat 426 || || ||| |||| ||||||||||||||||| |||||||||||||| | |||||| ||| Sbjct: 304 gagtcatgcttggcaaggcccatcagcagctttcaccagcattgcactaagaggggtgat 363 Query: 427 gcacactctggggtcaagttcacatacaacaaacagtcggggagctcgcacaacgtcaag 486 ||||||||||||||||||||||||||| ||| | || || | ||| |||| ||||||| Sbjct: 364 acacactctggggtcaagttcacatacagcaagccttcaggaaactctcacaccgtcaag 423 Query: 487 acgttcctctacaagcctgccaac 510 |||||||||||||||||||||||| Sbjct: 424 acgttcctctacaagcctgccaac 447
>gb|AY104587.1| Zea mays PCO104634 mRNA sequence Length = 903 Score = 311 bits (157), Expect = 1e-81 Identities = 307/357 (85%) Strand = Plus / Plus Query: 152 cggcggccgaggcttggacgggggagatccgcggccgcgtcgtctgcgacgtctgcgcgg 211 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 243 cggcggccgaggcttggacgggggagatccgcggccgcgtcgtctgcgacgtctgcggcg 302 Query: 212 actctgccatcggccccgaggaccacgtcctcgaaggcgctgaggttgctgttctgtgca 271 || | ||||||||||| |||||||||| ||||||||| || ||||||||||| || |||| Sbjct: 303 acgcagccatcggcccggaggaccacgccctcgaaggtgcggaggttgctgtcctctgca 362 Query: 272 tcacgaaatctggtgaggtcatcaactaccaggcgttcacaaactacaagggtgtctaca 331 |||| |||||||||||||| |||||||| || || |||||||||| |||||| || || | Sbjct: 363 tcacaaaatctggtgaggttatcaactatcaagccttcacaaactccaagggcgtgtata 422 Query: 332 gcgttgcagagacaatgcctgagagcgaccgatgggattcgtgcctggcgaggcccatca 391 || || ||||| ||||| ||||||||| | ||||| |||||| |||||||||| || | Sbjct: 423 ctgtcgccgagactatgccggagagcgacaggtgggactcgtgcttggcgaggcctatga 482 Query: 392 gcagcttccaccagcattgcaccaggaggggcgatgcacactctggggtcaagttcacat 451 |||||||||| | |||||||| || |||| ||||| ||||||||||| |||||||| | Sbjct: 483 gcagcttccatctacattgcacacggcggggtgatgctcactctggggtgaagttcactt 542 Query: 452 acaacaaacagtcggggagctcgcacaacgtcaagacgttcctctacaagcctgcca 508 |||||||| ||| |||| | |||||| ||||||| | |||||||||||||| |||| Sbjct: 543 acaacaaatcgtctgggaacccgcacaccgtcaagcctttcctctacaagccggcca 599
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 250 bits (126), Expect = 4e-63 Identities = 225/258 (87%) Strand = Plus / Minus Query: 253 gaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccaggcgttcaca 312 |||||||| || || |||||||||| ||||||||| || |||||||||||||| |||||| Sbjct: 12629680 gaggttgccgtcctctgcatcacgagatctggtgaagttatcaactaccaggccttcaca 12629621 Query: 313 aactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccgatgggattcg 372 |||| |||||||||||||| ||||| ||||| ||||| ||||| ||||| ||||| || Sbjct: 12629620 aactccaagggtgtctacattgttgcggagacgatgccagagagtgaccgttgggagtca 12629561 Query: 373 tgcctggcgaggcccatcagcagcttccaccagcattgcaccaggaggggcgatgcacac 432 ||| |||| ||||||||||||||||| |||||||||||||| | |||||| ||| ||||| Sbjct: 12629560 tgcttggcaaggcccatcagcagctttcaccagcattgcactaagaggggtgatacacac 12629501 Query: 433 tctggggtcaagttcacatacaacaaacagtcggggagctcgcacaacgtcaagacgttc 492 |||||||||||||||||||||| ||| | || || | ||| |||| ||||||||||||| Sbjct: 12629500 tctggggtcaagttcacatacagcaagccttcaggaaactctcacaccgtcaagacgttc 12629441 Query: 493 ctctacaagcctgccaac 510 |||||||||||||||||| Sbjct: 12629440 ctctacaagcctgccaac 12629423 Score = 170 bits (86), Expect = 3e-39 Identities = 113/122 (92%) Strand = Plus / Minus Query: 127 ctcgctttcctgctggccgcggccccggcggccgaggcttggacgggggagatccgcggc 186 ||||| || ||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 12632467 ctcgccttgctgctggtagcggccccggcggccgaggcgtggacgggggagatccgcggc 12632408 Query: 187 cgcgtcgtctgcgacgtctgcgcggactctgccatcggccccgaggaccacgtcctcgaa 246 | |||||||||||||||||||| |||| | |||||||||||||||||||||||||||||| Sbjct: 12632407 cacgtcgtctgcgacgtctgcggggacgccgccatcggccccgaggaccacgtcctcgaa 12632348 Query: 247 gg 248 || Sbjct: 12632347 gg 12632346
>dbj|AP004024.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1134_B09 Length = 105247 Score = 250 bits (126), Expect = 4e-63 Identities = 225/258 (87%) Strand = Plus / Minus Query: 253 gaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccaggcgttcaca 312 |||||||| || || |||||||||| ||||||||| || |||||||||||||| |||||| Sbjct: 26739 gaggttgccgtcctctgcatcacgagatctggtgaagttatcaactaccaggccttcaca 26680 Query: 313 aactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccgatgggattcg 372 |||| |||||||||||||| ||||| ||||| ||||| ||||| ||||| ||||| || Sbjct: 26679 aactccaagggtgtctacattgttgcggagacgatgccagagagtgaccgttgggagtca 26620 Query: 373 tgcctggcgaggcccatcagcagcttccaccagcattgcaccaggaggggcgatgcacac 432 ||| |||| ||||||||||||||||| |||||||||||||| | |||||| ||| ||||| Sbjct: 26619 tgcttggcaaggcccatcagcagctttcaccagcattgcactaagaggggtgatacacac 26560 Query: 433 tctggggtcaagttcacatacaacaaacagtcggggagctcgcacaacgtcaagacgttc 492 |||||||||||||||||||||| ||| | || || | ||| |||| ||||||||||||| Sbjct: 26559 tctggggtcaagttcacatacagcaagccttcaggaaactctcacaccgtcaagacgttc 26500 Query: 493 ctctacaagcctgccaac 510 |||||||||||||||||| Sbjct: 26499 ctctacaagcctgccaac 26482 Score = 170 bits (86), Expect = 3e-39 Identities = 113/122 (92%) Strand = Plus / Minus Query: 127 ctcgctttcctgctggccgcggccccggcggccgaggcttggacgggggagatccgcggc 186 ||||| || ||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 29526 ctcgccttgctgctggtagcggccccggcggccgaggcgtggacgggggagatccgcggc 29467 Query: 187 cgcgtcgtctgcgacgtctgcgcggactctgccatcggccccgaggaccacgtcctcgaa 246 | |||||||||||||||||||| |||| | |||||||||||||||||||||||||||||| Sbjct: 29466 cacgtcgtctgcgacgtctgcggggacgccgccatcggccccgaggaccacgtcctcgaa 29407 Query: 247 gg 248 || Sbjct: 29406 gg 29405
>dbj|AP004798.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0572D06 Length = 148920 Score = 250 bits (126), Expect = 4e-63 Identities = 225/258 (87%) Strand = Plus / Minus Query: 253 gaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccaggcgttcaca 312 |||||||| || || |||||||||| ||||||||| || |||||||||||||| |||||| Sbjct: 134213 gaggttgccgtcctctgcatcacgagatctggtgaagttatcaactaccaggccttcaca 134154 Query: 313 aactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccgatgggattcg 372 |||| |||||||||||||| ||||| ||||| ||||| ||||| ||||| ||||| || Sbjct: 134153 aactccaagggtgtctacattgttgcggagacgatgccagagagtgaccgttgggagtca 134094 Query: 373 tgcctggcgaggcccatcagcagcttccaccagcattgcaccaggaggggcgatgcacac 432 ||| |||| ||||||||||||||||| |||||||||||||| | |||||| ||| ||||| Sbjct: 134093 tgcttggcaaggcccatcagcagctttcaccagcattgcactaagaggggtgatacacac 134034 Query: 433 tctggggtcaagttcacatacaacaaacagtcggggagctcgcacaacgtcaagacgttc 492 |||||||||||||||||||||| ||| | || || | ||| |||| ||||||||||||| Sbjct: 134033 tctggggtcaagttcacatacagcaagccttcaggaaactctcacaccgtcaagacgttc 133974 Query: 493 ctctacaagcctgccaac 510 |||||||||||||||||| Sbjct: 133973 ctctacaagcctgccaac 133956 Score = 170 bits (86), Expect = 3e-39 Identities = 113/122 (92%) Strand = Plus / Minus Query: 127 ctcgctttcctgctggccgcggccccggcggccgaggcttggacgggggagatccgcggc 186 ||||| || ||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 137000 ctcgccttgctgctggtagcggccccggcggccgaggcgtggacgggggagatccgcggc 136941 Query: 187 cgcgtcgtctgcgacgtctgcgcggactctgccatcggccccgaggaccacgtcctcgaa 246 | |||||||||||||||||||| |||| | |||||||||||||||||||||||||||||| Sbjct: 136940 cacgtcgtctgcgacgtctgcggggacgccgccatcggccccgaggaccacgtcctcgaa 136881 Query: 247 gg 248 || Sbjct: 136880 gg 136879
>ref|NM_124867.2| Arabidopsis thaliana unknown protein AT5G54855 mRNA, complete cds Length = 679 Score = 117 bits (59), Expect = 4e-23 Identities = 134/159 (84%) Strand = Plus / Plus Query: 244 gaaggcgctgaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccag 303 ||||| ||||||||||| ||||||||||| || |||||||| || || | |||||||| Sbjct: 259 gaaggagctgaggttgcggttctgtgcataaccaaatctggagaagttgtgaactaccaa 318 Query: 304 gcgttcacaaactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccga 363 || |||||||||| || |||||||||| ||||||||||||||||| |||||||| || Sbjct: 319 gctttcacaaactcaaaaggtgtctacacagttgcagagacaatgccagagagcgaacgt 378 Query: 364 tgggattcgtgcctggcgaggcccatcagcagcttccac 402 ||||| | ||||| || || |||||||||||||||||| Sbjct: 379 tgggacgcttgccttgcaagacccatcagcagcttccac 417
>gb|AY093718.1| Arabidopsis thaliana AT1g27100/T7N9_16 mRNA, complete cds Length = 441 Score = 117 bits (59), Expect = 4e-23 Identities = 134/159 (84%) Strand = Plus / Plus Query: 244 gaaggcgctgaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccag 303 ||||| ||||||||||| ||||||||||| || |||||||| || || | |||||||| Sbjct: 157 gaaggagctgaggttgcggttctgtgcataaccaaatctggagaagttgtgaactaccaa 216 Query: 304 gcgttcacaaactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccga 363 || |||||||||| || |||||||||| ||||||||||||||||| |||||||| || Sbjct: 217 gctttcacaaactcaaaaggtgtctacacagttgcagagacaatgccagagagcgaacgt 276 Query: 364 tgggattcgtgcctggcgaggcccatcagcagcttccac 402 ||||| | ||||| || || |||||||||||||||||| Sbjct: 277 tgggacgcttgccttgcaagacccatcagcagcttccac 315
>gb|AF410270.1|AF410270 Arabidopsis thaliana unknown protein mRNA, complete cds Length = 636 Score = 117 bits (59), Expect = 4e-23 Identities = 134/159 (84%) Strand = Plus / Plus Query: 244 gaaggcgctgaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccag 303 ||||| ||||||||||| ||||||||||| || |||||||| || || | |||||||| Sbjct: 216 gaaggagctgaggttgcggttctgtgcataaccaaatctggagaagttgtgaactaccaa 275 Query: 304 gcgttcacaaactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccga 363 || |||||||||| || |||||||||| ||||||||||||||||| |||||||| || Sbjct: 276 gctttcacaaactcaaaaggtgtctacacagttgcagagacaatgccagagagcgaacgt 335 Query: 364 tgggattcgtgcctggcgaggcccatcagcagcttccac 402 ||||| | ||||| || || |||||||||||||||||| Sbjct: 336 tgggacgcttgccttgcaagacccatcagcagcttccac 374
>dbj|AK118946.1| Arabidopsis thaliana At5g54855 mRNA for unknown protein, complete cds, clone: RAFL21-28-L11 Length = 635 Score = 117 bits (59), Expect = 4e-23 Identities = 134/159 (84%) Strand = Plus / Plus Query: 244 gaaggcgctgaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccag 303 ||||| ||||||||||| ||||||||||| || |||||||| || || | |||||||| Sbjct: 229 gaaggagctgaggttgcggttctgtgcataaccaaatctggagaagttgtgaactaccaa 288 Query: 304 gcgttcacaaactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccga 363 || |||||||||| || |||||||||| ||||||||||||||||| |||||||| || Sbjct: 289 gctttcacaaactcaaaaggtgtctacacagttgcagagacaatgccagagagcgaacgt 348 Query: 364 tgggattcgtgcctggcgaggcccatcagcagcttccac 402 ||||| | ||||| || || |||||||||||||||||| Sbjct: 349 tgggacgcttgccttgcaagacccatcagcagcttccac 387
>dbj|AB005232.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBG8 Length = 80315 Score = 113 bits (57), Expect = 6e-22 Identities = 129/153 (84%) Strand = Plus / Plus Query: 250 gctgaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccaggcgttc 309 ||||||||||| ||||||||||| || |||||||| || || | |||||||| || ||| Sbjct: 42976 gctgaggttgcggttctgtgcataaccaaatctggagaagttgtgaactaccaagctttc 43035 Query: 310 acaaactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccgatgggat 369 ||||||| || |||||||||| ||||||||||||||||| |||||||| || ||||| Sbjct: 43036 acaaactcaaaaggtgtctacacagttgcagagacaatgccagagagcgaacgttgggac 43095 Query: 370 tcgtgcctggcgaggcccatcagcagcttccac 402 | ||||| || || |||||||||||||||||| Sbjct: 43096 gcttgccttgcaagacccatcagcagcttccac 43128
>gb|AY088675.1| Arabidopsis thaliana clone 9159 mRNA, complete sequence Length = 661 Score = 109 bits (55), Expect = 1e-20 Identities = 133/159 (83%) Strand = Plus / Plus Query: 244 gaaggcgctgaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccag 303 ||||| ||||||||||| ||||||||||| || |||||||| || || | |||||||| Sbjct: 259 gaaggagctgaggttgcggttctgtgcataaccaaatctggagaagttgtgaactaccaa 318 Query: 304 gcgttcacaaactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccga 363 || ||||| |||| || |||||||||| ||||||||||||||||| |||||||| || Sbjct: 319 gctttcactaactcaaaaggtgtctacacagttgcagagacaatgccagagagcgaacgt 378 Query: 364 tgggattcgtgcctggcgaggcccatcagcagcttccac 402 ||||| | ||||| || || |||||||||||||||||| Sbjct: 379 tgggacgcttgccttgcaagacccatcagcagcttccac 417
>emb|BX830033.1|CNS0A053 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB54ZF04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1507 Score = 83.8 bits (42), Expect = 6e-13 Identities = 123/150 (82%) Strand = Plus / Plus Query: 250 gctgaggttgctgttctgtgcatcacgaaatctggtgaggtcatcaactaccaggcgttc 309 ||||||||||| ||||||||||| || |||||||| || || | |||||||| || || Sbjct: 1134 gctgaggttgcggttctgtgcataaccaaatctggagaagttgtgaactaccaagctttt 1193 Query: 310 acaaactacaagggtgtctacagcgttgcagagacaatgcctgagagcgaccgatgggat 369 ||||||| || |||||||| | ||||||||||||||||| |||||||| || ||||| Sbjct: 1194 acaaactcaaaaggtgtctaaacagttgcagagacaatgccagagagcgaacgttgggac 1253 Query: 370 tcgtgcctggcgaggcccatcagcagcttc 399 | | ||| || || ||||||||||||||| Sbjct: 1254 gcttcccttgcaagacccatcagcagcttc 1283
>gb|AY364845.1| Virus PhiCh1 pBgB51 capsid protein, int1, and capsid protein genes, complete cds Length = 5995 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 cgcggccgcgtcgtctgcgac 201 ||||||||||||||||||||| Sbjct: 5722 cgcggccgcgtcgtctgcgac 5742
>gb|AY364843.1| Virus PhiCh1 pBgB5 ORF34-5, integrase, and ORF36-5 genes, complete cds Length = 5995 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 cgcggccgcgtcgtctgcgac 201 ||||||||||||||||||||| Sbjct: 5722 cgcggccgcgtcgtctgcgac 5742
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 185 gccgcgtcgtctgcgacgtctgcgc 209 ||||||||||||||| ||||||||| Sbjct: 11359213 gccgcgtcgtctgcgccgtctgcgc 11359237 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 185 gccgcgtcgtctgcgacgtctgcg 208 ||||||||||||||| |||||||| Sbjct: 8951927 gccgcgtcgtctgcgccgtctgcg 8951904
>gb|AF440695.1| Virus PhiCh1, complete genome Length = 58498 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 cgcggccgcgtcgtctgcgac 201 ||||||||||||||||||||| Sbjct: 27029 cgcggccgcgtcgtctgcgac 27049
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 185 gccgcgtcgtctgcgacgtctgcgc 209 ||||||||||||||| ||||||||| Sbjct: 11355976 gccgcgtcgtctgcgccgtctgcgc 11356000 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 185 gccgcgtcgtctgcgacgtctgcg 208 ||||||||||||||| |||||||| Sbjct: 8949762 gccgcgtcgtctgcgccgtctgcg 8949739
>gb|AC134230.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0005J15, complete sequence Length = 159270 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 185 gccgcgtcgtctgcgacgtctgcgc 209 ||||||||||||||| ||||||||| Sbjct: 67510 gccgcgtcgtctgcgccgtctgcgc 67534
>gb|AY661566.1| Saccharopolyspora erythraea polyketide synthase gene cluster, complete sequence Length = 32299 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 ttcctgctggccgcggccccggcg 156 ||||||||||||||||||| |||| Sbjct: 1231 ttcctgctggccgcggcccaggcg 1254
>gb|AC114420.11| Mus musculus chromosome 5, clone RP23-375E13, complete sequence Length = 155958 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 ctcaccggtgtctgctcctc 111 |||||||||||||||||||| Sbjct: 130526 ctcaccggtgtctgctcctc 130545
>gb|DQ149987.1| Streptomyces neyagawaensis concanamycin A biosynthetic gene cluster, complete sequence Length = 99892 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 ggccgcggccccggcggccg 160 |||||||||||||||||||| Sbjct: 60608 ggccgcggccccggcggccg 60627
>emb|CR674137.2|CNS0FJ4V Tetraodon nigroviridis full-length cDNA Length = 453 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 cctgctggccgcggccccggcggc 158 ||||||||||| |||||||||||| Sbjct: 131 cctgctggccgaggccccggcggc 154
>emb|Z82188.2|HS151B14 Human DNA sequence from clone RP1-151B14 on chromosome 22, complete sequence Length = 128942 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 ctcctccatctggccatcct 128 |||||||||||||||||||| Sbjct: 96064 ctcctccatctggccatcct 96045
>emb|AL161729.27| Human DNA sequence from clone RP11-435O5 on chromosome 9q22.1-22.33 Contains the PTCH gene for patched homolog, a novel gene, the gene for a novel protein similar to a metallothionein protein (MT1) and three CpG islands, complete sequence Length = 189643 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 gctggccgcggccccggcgg 157 |||||||||||||||||||| Sbjct: 53478 gctggccgcggccccggcgg 53459
>gb|BC023640.1| Homo sapiens, clone IMAGE:4890344, mRNA Length = 1429 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gctggccgcggccccggcgg 157 |||||||||||||||||||| Sbjct: 1140 gctggccgcggccccggcgg 1159
>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29 Length = 277000 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 gccgcggccccggcggccga 161 |||||||||||||||||||| Sbjct: 122901 gccgcggccccggcggccga 122882
>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29 Length = 339650 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 222 cggccccgaggaccacgtcctcga 245 |||||||||||||| ||||||||| Sbjct: 335453 cggccccgaggacctcgtcctcga 335430
>gb|AC099506.3| Homo sapiens chromosome 16 clone RP11-22H5, complete sequence Length = 186318 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 aaagtcaccaagctctaccc 34 |||||||||||||||||||| Sbjct: 38036 aaagtcaccaagctctaccc 38055
>gb|AE012496.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 404 of 460 of the complete genome Length = 12103 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 gctggccgcggccccggcgg 157 |||||||||||||||||||| Sbjct: 8722 gctggccgcggccccggcgg 8703
>gb|AC116665.1| Papio hamadryas chromosome , clone RP41-119J13, complete sequence Length = 176602 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 ggccgcggccccggcggccgaggc 164 |||||||||| ||||||||||||| Sbjct: 21182 ggccgcggccgcggcggccgaggc 21205
>gb|AF196488.2|AF196488 Mycobacterium smegmatis hypothetical protein, complete cds; and cydABDC gene cluster, complete sequence Length = 7506 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 142 gccgcggccccggcggccgaggct 165 ||||||||||||||||||| |||| Sbjct: 6534 gccgcggccccggcggccgtggct 6557
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 cgtcctcgaaggcgctgagg 256 |||||||||||||||||||| Sbjct: 4215927 cgtcctcgaaggcgctgagg 4215908
>gb|AC135209.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0071M09, complete sequence Length = 143595 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 185 gccgcgtcgtctgcgacgtctgcg 208 ||||||||||||||| |||||||| Sbjct: 76788 gccgcgtcgtctgcgccgtctgcg 76765
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 gctggccgcggccccggcgg 157 |||||||||||||||||||| Sbjct: 4524156 gctggccgcggccccggcgg 4524137
>gb|AC120182.8| Mus musculus chromosome 1, clone RP24-501C2, complete sequence Length = 188506 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 tcagcagcttccaccagcat 408 |||||||||||||||||||| Sbjct: 24887 tcagcagcttccaccagcat 24868
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 ccccgaggaccacgtcctcg 244 |||||||||||||||||||| Sbjct: 1743973 ccccgaggaccacgtcctcg 1743992
>gb|AF031418.3| Pseudomonas putida FliK (fliK), FliL, FliM (fliM), FliN (fliN), FliO (fliO), FliP (fliP), FliQ (fliQ), FliR (fliR), and FlhB (flhB) genes, complete cds; and unknown gene Length = 10493 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 137 tgctggccgcggccccggcggccg 160 |||||||||||||| ||||||||| Sbjct: 4094 tgctggccgcggcctcggcggccg 4071
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 178 atccgcggccgcgtcgtctgcgacgtct 205 |||||||||||||||||| || |||||| Sbjct: 2820186 atccgcggccgcgtcgtcggcaacgtct 2820213
>gb|AC008572.6|AC008572 Homo sapiens chromosome 5 clone CTC-551A13, complete sequence Length = 170529 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 ctgaggttgctgttctgtgc 270 |||||||||||||||||||| Sbjct: 74384 ctgaggttgctgttctgtgc 74403
>gb|AC093475.9| Mus musculus chromosome 1, clone RP23-54K22, complete sequence Length = 248543 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 tcagcagcttccaccagcat 408 |||||||||||||||||||| Sbjct: 216627 tcagcagcttccaccagcat 216608
>gb|M63676.1|SERERYAA Saccharopolyspora erythraea EryA (eryA) gene, complete cds Length = 11219 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 ttcctgctggccgcggccccggcg 156 ||||||||||||||||||| |||| Sbjct: 1818 ttcctgctggccgcggcccaggcg 1841 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,989,417 Number of Sequences: 3902068 Number of extensions: 3989417 Number of successful extensions: 81530 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80935 Number of HSP's gapped (non-prelim): 589 length of query: 572 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 549 effective length of database: 17,143,297,704 effective search space: 9411670439496 effective search space used: 9411670439496 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)