ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal22e19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_450284.1| Oryza sativa (japonica cultivar-group), mRNA 66 1e-07
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
3dbj|AP005905.3| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
4dbj|AK120335.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
5gb|BC093450.1| Xenopus tropicalis Cas-Br-M (murine) ecotropic re... 44 0.43
6emb|CT030464.1| Xenopus tropicalis finished cDNA, clone TGas044p11 44 0.43
7gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 gen... 42 1.7
8dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
9gb|AF237765.1|AF237765 Xenopus laevis Cbl proto-oncogene protein... 42 1.7
10gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
11gb|AC125321.4| Mus musculus BAC clone RP23-371B13 from chromosom... 40 6.7
12gb|AC122447.4| Mus musculus BAC clone RP24-240O5 from chromosome... 40 6.7
13gb|AC121784.2| Mus musculus BAC clone RP23-378G4 from 12, comple... 40 6.7
14gb|AC095067.4| Homo sapiens BAC clone RP11-655F21 from 7, comple... 40 6.7
15gb|AY841769.1| Marine bacterium HP12 putative polyketide synthas... 40 6.7
16emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 6.7
17emb|BX548063.3| Zebrafish DNA sequence from clone CH211-198J3 in... 40 6.7
18emb|AJ517767.1|MMU517767 Mus musculus Mirg mRNA 40 6.7
19gb|AC134897.4| Mus musculus BAC clone RP23-459D9 from 6, complet... 40 6.7
20gb|AC153632.2| Mus musculus 6 BAC RP23-450O1 (Roswell Park Cance... 40 6.7 
>ref|XM_450284.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2579

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 174/221 (78%)
 Strand = Plus / Plus

                                                                       
Query: 228 gagatcttcgatgttccgagcagaagcccggtccacggattctgagaaatatactacgaa 287
           ||||||| || ||||||| |||||||| ||||| || ||  |||||||||    ||| ||
Sbjct: 137 gagatctccggtgttccgtgcagaagctcggtcaactgaaactgagaaattccgtaccaa 196

                                                                       
Query: 288 tggccggtcgaggaagatggttccgacaactgaattgatgaagaacaaggctggtggccg 347
           ||||||  |||  |||||||| |||||||| || ||||  | || ||||  ||||| |||
Sbjct: 197 tggccgcgcgataaagatggtcccgacaacagagttgaaaaggagcaagagtggtgtccg 256

                                                                       
Query: 348 tgcaagaacagatacagttaatggttctctgaatggagctgtcaatggctcgaccaaggc 407
            | |||  |||| ||||||||||| ||||  | ||| |||||||||||||| ||||||| 
Sbjct: 257 agtaaggccagacacagttaatggctctccaagtggtgctgtcaatggctcaaccaaggt 316

                                                    
Query: 408 agtcatcaatggttctacgaatggcgttgtcaacggttcga 448
            | ||||||||||||| | ||||  | |||||| |||||||
Sbjct: 317 ggccatcaatggttctcctaatgctgctgtcaatggttcga 357



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                         
Query: 139 atggcgatgatggtggctgatcttagcttctcagcgtctatatcca 184
           |||||||||||| |||||||||| ||||||||| | ||||| ||||
Sbjct: 39  atggcgatgatgatggctgatctcagcttctcatcatctatctcca 84
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 174/221 (78%)
 Strand = Plus / Plus

                                                                           
Query: 228     gagatcttcgatgttccgagcagaagcccggtccacggattctgagaaatatactacgaa 287
               ||||||| || ||||||| |||||||| ||||| || ||  |||||||||    ||| ||
Sbjct: 3801908 gagatctccggtgttccgtgcagaagctcggtcaactgaaactgagaaattccgtaccaa 3801967

                                                                           
Query: 288     tggccggtcgaggaagatggttccgacaactgaattgatgaagaacaaggctggtggccg 347
               ||||||  |||  |||||||| |||||||| || ||||  | || ||||  ||||| |||
Sbjct: 3801968 tggccgcgcgataaagatggtcccgacaacagagttgaaaaggagcaagagtggtgtccg 3802027

                                                                           
Query: 348     tgcaagaacagatacagttaatggttctctgaatggagctgtcaatggctcgaccaaggc 407
                | |||  |||| ||||||||||| ||||  | ||| |||||||||||||| ||||||| 
Sbjct: 3802028 agtaaggccagacacagttaatggctctccaagtggtgctgtcaatggctcaaccaaggt 3802087

                                                        
Query: 408     agtcatcaatggttctacgaatggcgttgtcaacggttcga 448
                | ||||||||||||| | ||||  | |||||| |||||||
Sbjct: 3802088 ggccatcaatggttctcctaatgctgctgtcaatggttcga 3802128



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                             
Query: 139     atggcgatgatggtggctgatcttagcttctcagcgtctatatcca 184
               |||||||||||| |||||||||| ||||||||| | ||||| ||||
Sbjct: 3801810 atggcgatgatgatggctgatctcagcttctcatcatctatctcca 3801855
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>dbj|AP005905.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1080A02
          Length = 151360

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 174/221 (78%)
 Strand = Plus / Plus

                                                                         
Query: 228   gagatcttcgatgttccgagcagaagcccggtccacggattctgagaaatatactacgaa 287
             ||||||| || ||||||| |||||||| ||||| || ||  |||||||||    ||| ||
Sbjct: 41424 gagatctccggtgttccgtgcagaagctcggtcaactgaaactgagaaattccgtaccaa 41483

                                                                         
Query: 288   tggccggtcgaggaagatggttccgacaactgaattgatgaagaacaaggctggtggccg 347
             ||||||  |||  |||||||| |||||||| || ||||  | || ||||  ||||| |||
Sbjct: 41484 tggccgcgcgataaagatggtcccgacaacagagttgaaaaggagcaagagtggtgtccg 41543

                                                                         
Query: 348   tgcaagaacagatacagttaatggttctctgaatggagctgtcaatggctcgaccaaggc 407
              | |||  |||| ||||||||||| ||||  | ||| |||||||||||||| ||||||| 
Sbjct: 41544 agtaaggccagacacagttaatggctctccaagtggtgctgtcaatggctcaaccaaggt 41603

                                                      
Query: 408   agtcatcaatggttctacgaatggcgttgtcaacggttcga 448
              | ||||||||||||| | ||||  | |||||| |||||||
Sbjct: 41604 ggccatcaatggttctcctaatgctgctgtcaatggttcga 41644



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                           
Query: 139   atggcgatgatggtggctgatcttagcttctcagcgtctatatcca 184
             |||||||||||| |||||||||| ||||||||| | ||||| ||||
Sbjct: 41326 atggcgatgatgatggctgatctcagcttctcatcatctatctcca 41371
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>dbj|AK120335.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059I22, full
           insert sequence
          Length = 2579

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 174/221 (78%)
 Strand = Plus / Plus

                                                                       
Query: 228 gagatcttcgatgttccgagcagaagcccggtccacggattctgagaaatatactacgaa 287
           ||||||| || ||||||| |||||||| ||||| || ||  |||||||||    ||| ||
Sbjct: 137 gagatctccggtgttccgtgcagaagctcggtcaactgaaactgagaaattccgtaccaa 196

                                                                       
Query: 288 tggccggtcgaggaagatggttccgacaactgaattgatgaagaacaaggctggtggccg 347
           ||||||  |||  |||||||| |||||||| || ||||  | || ||||  ||||| |||
Sbjct: 197 tggccgcgcgataaagatggtcccgacaacagagttgaaaaggagcaagagtggtgtccg 256

                                                                       
Query: 348 tgcaagaacagatacagttaatggttctctgaatggagctgtcaatggctcgaccaaggc 407
            | |||  |||| ||||||||||| ||||  | ||| |||||||||||||| ||||||| 
Sbjct: 257 agtaaggccagacacagttaatggctctccaagtggtgctgtcaatggctcaaccaaggt 316

                                                    
Query: 408 agtcatcaatggttctacgaatggcgttgtcaacggttcga 448
            | ||||||||||||| | ||||  | |||||| |||||||
Sbjct: 317 ggccatcaatggttctcctaatgctgctgtcaatggttcga 357



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                         
Query: 139 atggcgatgatggtggctgatcttagcttctcagcgtctatatcca 184
           |||||||||||| |||||||||| ||||||||| | ||||| ||||
Sbjct: 39  atggcgatgatgatggctgatctcagcttctcatcatctatctcca 84
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>gb|BC093450.1| Xenopus tropicalis Cas-Br-M (murine) ecotropic retroviral
            transforming sequence, mRNA (cDNA clone IMAGE:6995776),
            partial cds
          Length = 5671

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 178  atatccagtgccaagctaccaa 199
            ||||||||||||||||||||||
Sbjct: 2276 atatccagtgccaagctaccaa 2297
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>emb|CT030464.1| Xenopus tropicalis finished cDNA, clone TGas044p11
          Length = 4848

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 178  atatccagtgccaagctaccaa 199
            ||||||||||||||||||||||
Sbjct: 1463 atatccagtgccaagctaccaa 1484
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>gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete
             sequence
          Length = 165394

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 380   atggagctgtcaatggctcga 400
             |||||||||||||||||||||
Sbjct: 31123 atggagctgtcaatggctcga 31103
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 380      atggagctgtcaatggctcga 400
                |||||||||||||||||||||
Sbjct: 19403257 atggagctgtcaatggctcga 19403237
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>gb|AF237765.1|AF237765 Xenopus laevis Cbl proto-oncogene protein (Cbl) mRNA, partial cds
          Length = 1758

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 178  atatccagtgccaagctacca 198
            |||||||||||||||||||||
Sbjct: 1199 atatccagtgccaagctacca 1219
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 380      atggagctgtcaatggctcga 400
                |||||||||||||||||||||
Sbjct: 19414533 atggagctgtcaatggctcga 19414513
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>gb|AC125321.4| Mus musculus BAC clone RP23-371B13 from chromosome 9, complete
            sequence
          Length = 196150

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 327  gaagaacaaggctggtggcc 346
            ||||||||||||||||||||
Sbjct: 1842 gaagaacaaggctggtggcc 1823
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>gb|AC122447.4| Mus musculus BAC clone RP24-240O5 from chromosome 9, complete sequence
          Length = 158058

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 327   gaagaacaaggctggtggcc 346
             ||||||||||||||||||||
Sbjct: 43975 gaagaacaaggctggtggcc 43994
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>gb|AC121784.2| Mus musculus BAC clone RP23-378G4 from 12, complete sequence
          Length = 163125

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 137    caatggcgatgatggtggct 156
              ||||||||||||||||||||
Sbjct: 137761 caatggcgatgatggtggct 137742
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>gb|AC095067.4| Homo sapiens BAC clone RP11-655F21 from 7, complete sequence
          Length = 88281

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 466   ggttctcctaaggtggctgt 485
             ||||||||||||||||||||
Sbjct: 46593 ggttctcctaaggtggctgt 46612
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>gb|AY841769.1| Marine bacterium HP12 putative polyketide synthase (pksI) gene,
           partial cds
          Length = 666

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  cgccggcccgcagcgccttg 100
           ||||||||||||||||||||
Sbjct: 313 cgccggcccgcagcgccttg 294
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 136     ccaatggcgatgatggtggc 155
               ||||||||||||||||||||
Sbjct: 1295915 ccaatggcgatgatggtggc 1295934
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>emb|BX548063.3| Zebrafish DNA sequence from clone CH211-198J3 in linkage group 20,
             complete sequence
          Length = 200237

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 313   acaactgaattgatgaagaa 332
             ||||||||||||||||||||
Sbjct: 97668 acaactgaattgatgaagaa 97687
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>emb|AJ517767.1|MMU517767 Mus musculus Mirg mRNA
          Length = 1297

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 137 caatggcgatgatggtggct 156
           ||||||||||||||||||||
Sbjct: 460 caatggcgatgatggtggct 441
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>gb|AC134897.4| Mus musculus BAC clone RP23-459D9 from 6, complete sequence
          Length = 173574

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 343   ggccgtgcaagaacagatacagtt 366
             |||| |||||||||||||||||||
Sbjct: 87927 ggccatgcaagaacagatacagtt 87904
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>gb|AC153632.2| Mus musculus 6 BAC RP23-450O1 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 182517

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 343    ggccgtgcaagaacagatacagtt 366
              |||| |||||||||||||||||||
Sbjct: 174580 ggccatgcaagaacagatacagtt 174557


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,081,514
Number of Sequences: 3902068
Number of extensions: 3081514
Number of successful extensions: 50241
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50137
Number of HSP's gapped (non-prelim): 100
length of query: 492
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 470
effective length of database: 17,147,199,772
effective search space: 8059183892840
effective search space used: 8059183892840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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