ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal22d15 |
|---|---|
| Clone Library Name | barley_pub |
>FRAT1_MOUSE (P70339) Proto-oncogene FRAT1 (Frequently rearranged in advanced| T-cell lymphomas) (Frat-1) Length = 274 Score = 30.4 bits (67), Expect = 1.2 Identities = 20/39 (51%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = +2 Query: 23 PGAVRHVAGERRRQLRRSAD---AAAAYGEDLLPRQPQL 130 PGAVR V GER R RSA A + G LP+QP L Sbjct: 104 PGAVRCVLGERGRVRGRSAPYCVAEISPGASALPQQPGL 142
>YNM4_YEAST (P53919) Hypothetical 54.9 kDa protein in SPC98-TOM70 intergenic| region Length = 492 Score = 30.0 bits (66), Expect = 1.6 Identities = 17/59 (28%), Positives = 28/59 (47%) Frame = +3 Query: 21 PPVPYGMSQVNVDGNCGGRPMPPQPTVKIYCRANPNYAMSVRNGKVVLAPANPKDDYQH 197 PP+PYG+ +N N PM QP + + N N+ + +++L + YQH Sbjct: 430 PPLPYGVPPMNQMQN----PMYIQPPPQAPPQGNGNFQQVMELHQILLQQQQQQHQYQH 484
>SYV_HAEDU (Q7VN93) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 961 Score = 28.9 bits (63), Expect = 3.6 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 4/60 (6%) Frame = +3 Query: 60 GNCGGRPMPPQPTVKIYCRANPNYAMS---VRNGKVVLAPANPKDDYQHWIKDMR-WSTS 227 G+ GG P+ P T + Y P ++ V NG++ P ++ Y W++D++ W S Sbjct: 373 GDRGGVPIEPMLTDQWYVSVKPLAEVATKAVENGEIQFVPKQYENLYFSWMRDIQDWCIS 432
>TUP11_SCHPO (Q09715) Transcriptional repressor tup11| Length = 614 Score = 28.9 bits (63), Expect = 3.6 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 17/80 (21%) Frame = +3 Query: 6 TPGYAPPVPYGMSQVNVDGN-------------CGGRP----MPPQPTVKIYCRANPNYA 134 TP Y PPV YG +QV+ N +P PP+ K A P+ Sbjct: 191 TPLYIPPVNYGANQVSQQPNPQLPGVSNYYNPSATSKPAVNVQPPRIPTKATPSAEPSMT 250 Query: 135 MSVRNGKVVLAPANPKDDYQ 194 S G + + A P +YQ Sbjct: 251 ASANAGSI--SQAGPDGEYQ 268
>SYV_PARUW (Q6MAM1) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 949 Score = 28.9 bits (63), Expect = 3.6 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%) Frame = +3 Query: 141 VRNGKVVLAPANPKDDYQHWIKDMR-WSTS 227 V+NG+V L P++ + Y HWI ++R W S Sbjct: 376 VQNGQVKLIPSHWESTYFHWIDNLRDWCIS 405
>KCNQ1_RAT (Q9Z0N7) Potassium voltage-gated channel subfamily KQT member 1| (Voltage-gated potassium channel subunit Kv7.1) (IKs producing slow voltage-gated potassium channel alpha subunit KvLQT1) (KQT-like 1) Length = 669 Score = 28.5 bits (62), Expect = 4.7 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Frame = +3 Query: 9 PGYAPPVPYGMSQVNVDGNCGGRP-MPPQPTVKIYCRANPNYAMSVRNGKV 158 PG APP+ +S V + G RP + P V IY P A + G+V Sbjct: 60 PGLAPPMSPPVSPVPAPADLGPRPRVSLDPRVSIYSTRRPLLARTHIQGRV 110
>GAT24_ARATH (Q5HZ36) GATA transcription factor 24| Length = 398 Score = 28.5 bits (62), Expect = 4.7 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%) Frame = +2 Query: 8 AGVRAPGAVRHVAGERRRQLRRSADAAAAYGED----LLPRQPQL 130 +G R P ++ + G R+R+ RR+A AAAA D + PR QL Sbjct: 245 SGPRGPKSLCNACGIRQRKARRAAMAAAAAAGDQEVAVAPRVQQL 289
>SYV_YERPS (Q66F11) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 965 Score = 28.1 bits (61), Expect = 6.1 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 4/60 (6%) Frame = +3 Query: 60 GNCGGRPMPPQPTVKIYCRANPNYAMS---VRNGKVVLAPANPKDDYQHWIKDMR-WSTS 227 G+ GG + P T + Y R P ++ V NG++ P ++ Y W++D++ W S Sbjct: 381 GDRGGVVIEPMLTDQWYVRTAPLAKVAIEAVENGEIQFVPKQYENMYYSWMRDIQDWCIS 440
>SYV_NOCFA (Q5Z048) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 893 Score = 28.1 bits (61), Expect = 6.1 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = +3 Query: 138 SVRNGKVVLAPANPKDDYQHWIKDMR-WSTS 227 +VRNG+VV+ PA+ + + W+ +M W+ S Sbjct: 388 AVRNGQVVIHPASQEPRWFEWVDNMHDWTIS 418
>YHO0_YEAST (P38800) Hypothetical 149.7 kDa protein in IRE1-KSP1 intergenic| region Length = 1345 Score = 28.1 bits (61), Expect = 6.1 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = -3 Query: 82 IGRPPQLPSTFTCDMPYGTG 23 IG+P LP D PYGTG Sbjct: 718 IGKPEDLPMPLQTDTPYGTG 737
>SYV_MYCLE (Q9CBY7) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 886 Score = 28.1 bits (61), Expect = 6.1 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Frame = +3 Query: 138 SVRNGKVVLAPANPKDDYQHWIKDMR-WSTS 227 +VRNG V+ PA+ + + W+ DMR W S Sbjct: 384 AVRNGDTVIHPASMESRWFAWVDDMRDWCIS 414
>SYV_BRUSU (Q8G0Y3) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 910 Score = 28.1 bits (61), Expect = 6.1 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%) Frame = +3 Query: 60 GNCGGRPMPPQPTVKIYCRAN----PNYAMSVRNGKVVLAPANPKDDYQHWIKDMR-WST 224 G+ GG P+ P T + Y A P A +VR+G+ + P N + Y W+++++ W Sbjct: 371 GDRGGVPIEPYLTDQWYVNAGELAKPAMA-AVRDGRTQIVPKNWEKTYFDWMENIQPWCV 429 Query: 225 S 227 S Sbjct: 430 S 430
>SYV_BRUME (Q8YGX8) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 910 Score = 28.1 bits (61), Expect = 6.1 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%) Frame = +3 Query: 60 GNCGGRPMPPQPTVKIYCRAN----PNYAMSVRNGKVVLAPANPKDDYQHWIKDMR-WST 224 G+ GG P+ P T + Y A P A +VR+G+ + P N + Y W+++++ W Sbjct: 371 GDRGGVPIEPYLTDQWYVNAGELAKPAMA-AVRDGRTQIVPKNWEKTYFDWMENIQPWCV 429 Query: 225 S 227 S Sbjct: 430 S 430
>VGLC_BHV1C (P14378) Glycoprotein GIII precursor| Length = 521 Score = 27.7 bits (60), Expect = 7.9 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 5/37 (13%) Frame = +3 Query: 3 ATPGYAPPV---PYGMSQVNVDG--NCGGRPMPPQPT 98 +TP APP P G + DG + GGRP PP+P+ Sbjct: 94 STPPPAPPEDGRPGGAGNASRDGRPSGGGRPRPPRPS 130
>SYV_GLUOX (Q5FN28) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 888 Score = 27.7 bits (60), Expect = 7.9 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 4/57 (7%) Frame = +3 Query: 69 GGRPMPPQPTVKIYCRANP---NYAMSVRNGKVVLAPANPKDDYQHWIKDMR-WSTS 227 GG + P+ T++ YC A +V +GK+ P ++ + W++D++ W S Sbjct: 362 GGAIVEPRLTLQWYCDAKTLSGPAVEAVESGKIAFEPRQWENTFHAWMRDIQPWCIS 418
>GALT6_BOVIN (Q5EA41) Polypeptide N-acetylgalactosaminyltransferase 6 (EC| 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase 6) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 6) (Polypeptide GalNAc transferase 6) (GalNAc-T6) (pp-GaNTase 6) Length = 622 Score = 27.7 bits (60), Expect = 7.9 Identities = 9/23 (39%), Positives = 16/23 (69%) Frame = +3 Query: 135 MSVRNGKVVLAPANPKDDYQHWI 203 ++ ++ K V+A NP D +QHW+ Sbjct: 598 LTSKDKKPVMATCNPSDPHQHWL 620
>BCL9_MOUSE (Q9D219) B-cell lymphoma 9 protein (Bcl-9)| Length = 1425 Score = 27.7 bits (60), Expect = 7.9 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Frame = +3 Query: 12 GYAPPVPYGMSQVNVDGNCGGR---PMPPQPTVKIYCRANPNYAMSVRNGKVVLAPANP 179 G PP + VN+ G+ PMPP+PT+ NP M R K + + P Sbjct: 968 GPPPPTASQPASVNIPGSLPSSTPYPMPPEPTLS----QNPLSIMMSRMSKFAMPSSTP 1022 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,576,193 Number of Sequences: 219361 Number of extensions: 570444 Number of successful extensions: 2109 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2042 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2107 length of database: 80,573,946 effective HSP length: 67 effective length of database: 65,876,759 effective search space used: 1581042216 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
