ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal22d15 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ022951.1| Triticum aestivum stress responsive protein mRNA, complete cds Length = 846 Score = 476 bits (240), Expect = e-131 Identities = 267/276 (96%) Strand = Plus / Plus Query: 1 tggcgacgccggggtacgcgcccccggtgccgtacggcatgtcgcaggtgaacgtcgacg 60 |||||||||| || |||||| | |||||||||||||||||||||||||||||| |||||| Sbjct: 60 tggcgacgcccggttacgcggcgccggtgccgtacggcatgtcgcaggtgaacatcgacg 119 Query: 61 gcaactgcggcggtcggccgatgccgccgcagcctacggtgaagatctactgccgcgcca 120 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 120 gcaactgcggcgggcggccgatgccgccgcagcccacggtgaagatctactgccgcgcca 179 Query: 121 accccaactacgccatgtccgtgcgcaacggcaaggtggtgctcgcgccggccaacccca 180 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 180 accccaactacgccatgtccgtgcgcaacggcaaggtggtgctggcgccggccaacccca 239 Query: 181 aggacgactaccagcactggatcaaggacatgaggtggagcaccagcatcaaggacgagg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 240 aggacgactaccagcactggatcaaggacatgaggtggagcaccagcatcaaggacgagg 299 Query: 241 agggctaccccgccttcgccatcgtgaacaaggcca 276 |||||||||||||||||||||| ||||||||||||| Sbjct: 300 agggctaccccgccttcgccatggtgaacaaggcca 335
>ref|XM_479573.1| Oryza sativa (japonica cultivar-group), mRNA Length = 988 Score = 270 bits (136), Expect = 2e-69 Identities = 241/276 (87%) Strand = Plus / Plus Query: 1 tggcgacgccggggtacgcgcccccggtgccgtacggcatgtcgcaggtgaacgtcgacg 60 |||||||||||||||||||||| ||| ||||||||| ||||||||||||||| |||| | Sbjct: 164 tggcgacgccggggtacgcgccggcggcgccgtacgggatgtcgcaggtgaacatcgagg 223 Query: 61 gcaactgcggcggtcggccgatgccgccgcagcctacggtgaagatctactgccgcgcca 120 | ||| | | || || || ||||||||||||| ||||||||| | |||||||| || | Sbjct: 224 ggaacgggtgtggcaggacgctgccgccgcagccgacggtgaaggtgtactgccgggcga 283 Query: 121 accccaactacgccatgtccgtgcgcaacggcaaggtggtgctcgcgccggccaacccca 180 |||| |||||||| ||| | | ||| |||||| ||||||||| |||||||| ||||||| Sbjct: 284 acccgaactacgcgatgacggcgcggaacggcgcggtggtgctggcgccggcgaacccca 343 Query: 181 aggacgactaccagcactggatcaaggacatgaggtggagcaccagcatcaaggacgagg 240 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 344 aggacgagtaccagcattggatcaaggacatgaggtggagcaccagcatcaaggacgagg 403 Query: 241 agggctaccccgccttcgccatcgtgaacaaggcca 276 |||||||||| ||||||||| |||| |||||||||| Sbjct: 404 agggctaccctgccttcgccctcgtcaacaaggcca 439
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 270 bits (136), Expect = 2e-69 Identities = 241/276 (87%) Strand = Plus / Plus Query: 1 tggcgacgccggggtacgcgcccccggtgccgtacggcatgtcgcaggtgaacgtcgacg 60 |||||||||||||||||||||| ||| ||||||||| ||||||||||||||| |||| | Sbjct: 28955459 tggcgacgccggggtacgcgccggcggcgccgtacgggatgtcgcaggtgaacatcgagg 28955518 Query: 61 gcaactgcggcggtcggccgatgccgccgcagcctacggtgaagatctactgccgcgcca 120 | ||| | | || || || ||||||||||||| ||||||||| | |||||||| || | Sbjct: 28955519 ggaacgggtgtggcaggacgctgccgccgcagccgacggtgaaggtgtactgccgggcga 28955578 Query: 121 accccaactacgccatgtccgtgcgcaacggcaaggtggtgctcgcgccggccaacccca 180 |||| |||||||| ||| | | ||| |||||| ||||||||| |||||||| ||||||| Sbjct: 28955579 acccgaactacgcgatgacggcgcggaacggcgcggtggtgctggcgccggcgaacccca 28955638 Query: 181 aggacgactaccagcactggatcaaggacatgaggtggagcaccagcatcaaggacgagg 240 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28955639 aggacgagtaccagcattggatcaaggacatgaggtggagcaccagcatcaaggacgagg 28955698 Query: 241 agggctaccccgccttcgccatcgtgaacaaggcca 276 |||||||||| ||||||||| |||| |||||||||| Sbjct: 28955699 agggctaccctgccttcgccctcgtcaacaaggcca 28955734 Score = 73.8 bits (37), Expect = 3e-10 Identities = 73/85 (85%) Strand = Plus / Plus Query: 192 cagcactggatcaaggacatgaggtggagcaccagcatcaaggacgaggagggctacccc 251 ||||||||| | |||||||||||| ||||| ||||||||||||||||| |||||||| Sbjct: 28940335 cagcactgggtgaaggacatgaggcacagcacgagcatcaaggacgaggaaggctacccg 28940394 Query: 252 gccttcgccatcgtgaacaaggcca 276 || ||||| | ||||||||||||| Sbjct: 28940395 gcgttcgcgctggtgaacaaggcca 28940419 Score = 54.0 bits (27), Expect = 2e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 193 agcactggatcaaggacatgaggtggagcaccagcatcaaggacgaggagggctaccccg 252 ||||||||||||||||||||||| |||| || |||| ||||||||| |||||||| | Sbjct: 28951671 agcactggatcaaggacatgaggcacagcaacaagatcagggacgaggaaggctacccgg 28951730 Query: 253 ccttcgc 259 | ||||| Sbjct: 28951731 cgttcgc 28951737 Score = 50.1 bits (25), Expect = 0.004 Identities = 70/85 (82%) Strand = Plus / Plus Query: 192 cagcactggatcaaggacatgaggtggagcaccagcatcaaggacgaggagggctacccc 251 ||||||||| ||||||||||||||| ||||||| | ||||||| ||||||| || Sbjct: 28950966 cagcactggttcaaggacatgaggttcagcaccaaggtgaaggacggggagggcatgccg 28951025 Query: 252 gccttcgccatcgtgaacaaggcca 276 || |||||| |||| |||||||||| Sbjct: 28951026 gcgttcgccctcgtcaacaaggcca 28951050
>dbj|AP005167.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0060O17 Length = 180015 Score = 270 bits (136), Expect = 2e-69 Identities = 241/276 (87%) Strand = Plus / Plus Query: 1 tggcgacgccggggtacgcgcccccggtgccgtacggcatgtcgcaggtgaacgtcgacg 60 |||||||||||||||||||||| ||| ||||||||| ||||||||||||||| |||| | Sbjct: 72996 tggcgacgccggggtacgcgccggcggcgccgtacgggatgtcgcaggtgaacatcgagg 73055 Query: 61 gcaactgcggcggtcggccgatgccgccgcagcctacggtgaagatctactgccgcgcca 120 | ||| | | || || || ||||||||||||| ||||||||| | |||||||| || | Sbjct: 73056 ggaacgggtgtggcaggacgctgccgccgcagccgacggtgaaggtgtactgccgggcga 73115 Query: 121 accccaactacgccatgtccgtgcgcaacggcaaggtggtgctcgcgccggccaacccca 180 |||| |||||||| ||| | | ||| |||||| ||||||||| |||||||| ||||||| Sbjct: 73116 acccgaactacgcgatgacggcgcggaacggcgcggtggtgctggcgccggcgaacccca 73175 Query: 181 aggacgactaccagcactggatcaaggacatgaggtggagcaccagcatcaaggacgagg 240 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73176 aggacgagtaccagcattggatcaaggacatgaggtggagcaccagcatcaaggacgagg 73235 Query: 241 agggctaccccgccttcgccatcgtgaacaaggcca 276 |||||||||| ||||||||| |||| |||||||||| Sbjct: 73236 agggctaccctgccttcgccctcgtcaacaaggcca 73271 Score = 73.8 bits (37), Expect = 3e-10 Identities = 73/85 (85%) Strand = Plus / Plus Query: 192 cagcactggatcaaggacatgaggtggagcaccagcatcaaggacgaggagggctacccc 251 ||||||||| | |||||||||||| ||||| ||||||||||||||||| |||||||| Sbjct: 57872 cagcactgggtgaaggacatgaggcacagcacgagcatcaaggacgaggaaggctacccg 57931 Query: 252 gccttcgccatcgtgaacaaggcca 276 || ||||| | ||||||||||||| Sbjct: 57932 gcgttcgcgctggtgaacaaggcca 57956 Score = 54.0 bits (27), Expect = 2e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 193 agcactggatcaaggacatgaggtggagcaccagcatcaaggacgaggagggctaccccg 252 ||||||||||||||||||||||| |||| || |||| ||||||||| |||||||| | Sbjct: 69208 agcactggatcaaggacatgaggcacagcaacaagatcagggacgaggaaggctacccgg 69267 Query: 253 ccttcgc 259 | ||||| Sbjct: 69268 cgttcgc 69274 Score = 50.1 bits (25), Expect = 0.004 Identities = 70/85 (82%) Strand = Plus / Plus Query: 192 cagcactggatcaaggacatgaggtggagcaccagcatcaaggacgaggagggctacccc 251 ||||||||| ||||||||||||||| ||||||| | ||||||| ||||||| || Sbjct: 68503 cagcactggttcaaggacatgaggttcagcaccaaggtgaaggacggggagggcatgccg 68562 Query: 252 gccttcgccatcgtgaacaaggcca 276 || |||||| |||| |||||||||| Sbjct: 68563 gcgttcgccctcgtcaacaaggcca 68587
>emb|Y08988.1|OSR40G3 O.sativa osr40g3 gene Length = 1531 Score = 270 bits (136), Expect = 2e-69 Identities = 241/276 (87%) Strand = Plus / Plus Query: 1 tggcgacgccggggtacgcgcccccggtgccgtacggcatgtcgcaggtgaacgtcgacg 60 |||||||||||||||||||||| ||| ||||||||| ||||||||||||||| |||| | Sbjct: 699 tggcgacgccggggtacgcgccggcggcgccgtacgggatgtcgcaggtgaacatcgagg 758 Query: 61 gcaactgcggcggtcggccgatgccgccgcagcctacggtgaagatctactgccgcgcca 120 | ||| | | || || || ||||||||||||| ||||||||| | |||||||| || | Sbjct: 759 ggaacgggtgtggcaggacgctgccgccgcagccgacggtgaaggtgtactgccgggcga 818 Query: 121 accccaactacgccatgtccgtgcgcaacggcaaggtggtgctcgcgccggccaacccca 180 |||| |||||||| ||| | | ||| |||||| ||||||||| |||||||| ||||||| Sbjct: 819 acccgaactacgcgatgacggcgcggaacggcgcggtggtgctggcgccggcgaacccca 878 Query: 181 aggacgactaccagcactggatcaaggacatgaggtggagcaccagcatcaaggacgagg 240 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 879 aggacgagtaccagcattggatcaaggacatgaggtggagcaccagcatcaaggacgagg 938 Query: 241 agggctaccccgccttcgccatcgtgaacaaggcca 276 |||||||||| ||||||||| |||| |||||||||| Sbjct: 939 agggctaccctgccttcgccctcgtcaacaaggcca 974
>dbj|AK072989.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023145K15, full insert sequence Length = 987 Score = 262 bits (132), Expect = 5e-67 Identities = 240/276 (86%) Strand = Plus / Plus Query: 1 tggcgacgccggggtacgcgcccccggtgccgtacggcatgtcgcaggtgaacgtcgacg 60 |||||||||||||||||||||| ||| ||||||||| ||||||||||||| | |||| | Sbjct: 163 tggcgacgccggggtacgcgccggcggcgccgtacgggatgtcgcaggtgagcatcgagg 222 Query: 61 gcaactgcggcggtcggccgatgccgccgcagcctacggtgaagatctactgccgcgcca 120 | ||| | | || || || ||||||||||||| ||||||||| | |||||||| || | Sbjct: 223 ggaacgggtgtggcaggacgctgccgccgcagccgacggtgaaggtgtactgccgggcga 282 Query: 121 accccaactacgccatgtccgtgcgcaacggcaaggtggtgctcgcgccggccaacccca 180 |||| |||||||| ||| | | ||| |||||| ||||||||| |||||||| ||||||| Sbjct: 283 acccgaactacgcgatgacggcgcggaacggcgcggtggtgctggcgccggcgaacccca 342 Query: 181 aggacgactaccagcactggatcaaggacatgaggtggagcaccagcatcaaggacgagg 240 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 343 aggacgagtaccagcattggatcaaggacatgaggtggagcaccagcatcaaggacgagg 402 Query: 241 agggctaccccgccttcgccatcgtgaacaaggcca 276 |||||||||| ||||||||| |||| |||||||||| Sbjct: 403 agggctaccctgccttcgccctcgtcaacaaggcca 438
>gb|BT018086.1| Zea mays clone EL01N0552C09.c mRNA sequence Length = 666 Score = 149 bits (75), Expect = 5e-33 Identities = 114/127 (89%) Strand = Plus / Plus Query: 148 acggcaaggtggtgctcgcgccggccaaccccaaggacgactaccagcactggatcaagg 207 |||| ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||| Sbjct: 36 acgggaaggtggtgctggcgccggcgaaccccaaggacgagtaccagcactggatcaagg 95 Query: 208 acatgaggtggagcaccagcatcaaggacgaggagggctaccccgccttcgccatcgtga 267 ||||| |||||||||| ||||||||||||||||| || ||||| || ||||| | |||| Sbjct: 96 acatgcggtggagcacgagcatcaaggacgaggaaggttacccggcgttcgcgctggtga 155 Query: 268 acaaggc 274 ||||||| Sbjct: 156 acaaggc 162
>ref|NM_187532.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1122 Score = 111 bits (56), Expect = 1e-21 Identities = 80/88 (90%) Strand = Plus / Plus Query: 183 gacgactaccagcactggatcaaggacatgaggtggagcaccagcatcaaggacgaggag 242 ||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct: 682 gacgagtaccagcactggatcaaggacatgaggcacagcaacagcatcaaggacgaggaa 741 Query: 243 ggctaccccgccttcgccatcgtgaaca 270 |||||||||||||||||| |||| |||| Sbjct: 742 ggctaccccgccttcgccctcgtcaaca 769 Score = 54.0 bits (27), Expect = 2e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 190 accagcactggatcaaggacatgaggtggagcaccagcatcaaggacgaggagggctacc 249 ||||||||||| |||||||||| | | ||| ||| |||||||||||||||||| ||| Sbjct: 182 accagcactggtacaaggacatgcgcttcagcgccaagatcaaggacgaggagggcaacc 241 Query: 250 ccgccttcgccatcgtgaacaaggcca 276 | || ||||| |||| |||||||||| Sbjct: 242 cggcgttcgcgctcgtcaacaaggcca 268
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 111 bits (56), Expect = 1e-21 Identities = 80/88 (90%) Strand = Plus / Minus Query: 183 gacgactaccagcactggatcaaggacatgaggtggagcaccagcatcaaggacgaggag 242 ||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct: 11931826 gacgagtaccagcactggatcaaggacatgaggcacagcaacagcatcaaggacgaggaa 11931767 Query: 243 ggctaccccgccttcgccatcgtgaaca 270 |||||||||||||||||| |||| |||| Sbjct: 11931766 ggctaccccgccttcgccctcgtcaaca 11931739 Score = 54.0 bits (27), Expect = 2e-04 Identities = 72/87 (82%) Strand = Plus / Minus Query: 190 accagcactggatcaaggacatgaggtggagcaccagcatcaaggacgaggagggctacc 249 ||||||||||| |||||||||| | | ||| ||| |||||||||||||||||| ||| Sbjct: 11932435 accagcactggtacaaggacatgcgcttcagcgccaagatcaaggacgaggagggcaacc 11932376 Query: 250 ccgccttcgccatcgtgaacaaggcca 276 | || ||||| |||| |||||||||| Sbjct: 11932375 cggcgttcgcgctcgtcaacaaggcca 11932349
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 111 bits (56), Expect = 1e-21 Identities = 80/88 (90%) Strand = Plus / Minus Query: 183 gacgactaccagcactggatcaaggacatgaggtggagcaccagcatcaaggacgaggag 242 ||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct: 11928589 gacgagtaccagcactggatcaaggacatgaggcacagcaacagcatcaaggacgaggaa 11928530 Query: 243 ggctaccccgccttcgccatcgtgaaca 270 |||||||||||||||||| |||| |||| Sbjct: 11928529 ggctaccccgccttcgccctcgtcaaca 11928502 Score = 54.0 bits (27), Expect = 2e-04 Identities = 72/87 (82%) Strand = Plus / Minus Query: 190 accagcactggatcaaggacatgaggtggagcaccagcatcaaggacgaggagggctacc 249 ||||||||||| |||||||||| | | ||| ||| |||||||||||||||||| ||| Sbjct: 11929198 accagcactggtacaaggacatgcgcttcagcgccaagatcaaggacgaggagggcaacc 11929139 Query: 250 ccgccttcgccatcgtgaacaaggcca 276 | || ||||| |||| |||||||||| Sbjct: 11929138 cggcgttcgcgctcgtcaacaaggcca 11929112
>dbj|AK069815.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031K10, full insert sequence Length = 1765 Score = 111 bits (56), Expect = 1e-21 Identities = 80/88 (90%) Strand = Plus / Plus Query: 183 gacgactaccagcactggatcaaggacatgaggtggagcaccagcatcaaggacgaggag 242 ||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct: 757 gacgagtaccagcactggatcaaggacatgaggcacagcaacagcatcaaggacgaggaa 816 Query: 243 ggctaccccgccttcgccatcgtgaaca 270 |||||||||||||||||| |||| |||| Sbjct: 817 ggctaccccgccttcgccctcgtcaaca 844 Score = 54.0 bits (27), Expect = 2e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 190 accagcactggatcaaggacatgaggtggagcaccagcatcaaggacgaggagggctacc 249 ||||||||||| |||||||||| | | ||| ||| |||||||||||||||||| ||| Sbjct: 257 accagcactggtacaaggacatgcgcttcagcgccaagatcaaggacgaggagggcaacc 316 Query: 250 ccgccttcgccatcgtgaacaaggcca 276 | || ||||| |||| |||||||||| Sbjct: 317 cggcgttcgcgctcgtcaacaaggcca 343
>gb|AC126222.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0014I10, complete sequence Length = 113946 Score = 111 bits (56), Expect = 1e-21 Identities = 80/88 (90%) Strand = Plus / Minus Query: 183 gacgactaccagcactggatcaaggacatgaggtggagcaccagcatcaaggacgaggag 242 ||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct: 33088 gacgagtaccagcactggatcaaggacatgaggcacagcaacagcatcaaggacgaggaa 33029 Query: 243 ggctaccccgccttcgccatcgtgaaca 270 |||||||||||||||||| |||| |||| Sbjct: 33028 ggctaccccgccttcgccctcgtcaaca 33001 Score = 54.0 bits (27), Expect = 2e-04 Identities = 72/87 (82%) Strand = Plus / Minus Query: 190 accagcactggatcaaggacatgaggtggagcaccagcatcaaggacgaggagggctacc 249 ||||||||||| |||||||||| | | ||| ||| |||||||||||||||||| ||| Sbjct: 33697 accagcactggtacaaggacatgcgcttcagcgccaagatcaaggacgaggagggcaacc 33638 Query: 250 ccgccttcgccatcgtgaacaaggcca 276 | || ||||| |||| |||||||||| Sbjct: 33637 cggcgttcgcgctcgtcaacaaggcca 33611
>emb|X95402.1|OSOSR40C1 O.sativa mRNA for novel protein, osr40c1 Length = 1458 Score = 103 bits (52), Expect = 3e-19 Identities = 79/88 (89%) Strand = Plus / Plus Query: 183 gacgactaccagcactggatcaaggacatgaggtggagcaccagcatcaaggacgaggag 242 ||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct: 744 gacgagtaccagcactggatcaaggacatgaggcacagcaacagcatcaaggacgaggaa 803 Query: 243 ggctaccccgccttcgccatcgtgaaca 270 || ||||||||||||||| |||| |||| Sbjct: 804 gggtaccccgccttcgccctcgtcaaca 831 Score = 54.0 bits (27), Expect = 2e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 190 accagcactggatcaaggacatgaggtggagcaccagcatcaaggacgaggagggctacc 249 ||||||||||| |||||||||| | | ||| ||| |||||||||||||||||| ||| Sbjct: 244 accagcactggtacaaggacatgcgcttcagcgccaagatcaaggacgaggagggcaacc 303 Query: 250 ccgccttcgccatcgtgaacaaggcca 276 | || ||||| |||| |||||||||| Sbjct: 304 cggcgttcgcgctcgtcaacaaggcca 330
>ref|XM_479572.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1239 Score = 83.8 bits (42), Expect = 3e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 174 aaccccaaggacgactaccagcactggatcaaggacatgaggtggagcaccagcatcaag 233 ||||||| |||||||||||||||||||||||||||||||||| |||| || |||| | Sbjct: 523 aaccccagggacgactaccagcactggatcaaggacatgaggcacagcaacaagatcagg 582 Query: 234 gacgaggagggctaccccgccttcgc 259 |||||||| |||||||| || ||||| Sbjct: 583 gacgaggaaggctacccggcgttcgc 608 Score = 50.1 bits (25), Expect = 0.004 Identities = 70/85 (82%) Strand = Plus / Plus Query: 192 cagcactggatcaaggacatgaggtggagcaccagcatcaaggacgaggagggctacccc 251 ||||||||| ||||||||||||||| ||||||| | ||||||| ||||||| || Sbjct: 22 cagcactggttcaaggacatgaggttcagcaccaaggtgaaggacggggagggcatgccg 81 Query: 252 gccttcgccatcgtgaacaaggcca 276 || |||||| |||| |||||||||| Sbjct: 82 gcgttcgccctcgtcaacaaggcca 106
>ref|XM_479571.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1511 Score = 83.8 bits (42), Expect = 3e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 174 aaccccaaggacgactaccagcactggatcaaggacatgaggtggagcaccagcatcaag 233 ||||||| |||||||||||||||||||||||||||||||||| |||| || |||| | Sbjct: 738 aaccccagggacgactaccagcactggatcaaggacatgaggcacagcaacaagatcagg 797 Query: 234 gacgaggagggctaccccgccttcgc 259 |||||||| |||||||| || ||||| Sbjct: 798 gacgaggaaggctacccggcgttcgc 823 Score = 71.9 bits (36), Expect = 1e-09 Identities = 87/104 (83%) Strand = Plus / Plus Query: 173 caaccccaaggacgactaccagcactggatcaaggacatgaggtggagcaccagcatcaa 232 ||||||||||||||| ||||||||||| ||||||||||||||| ||||||| | || Sbjct: 218 caaccccaaggacgagcaccagcactggttcaaggacatgaggttcagcaccaaggtgaa 277 Query: 233 ggacgaggagggctaccccgccttcgccatcgtgaacaaggcca 276 ||||| ||||||| || || |||||| |||| |||||||||| Sbjct: 278 ggacggggagggcatgccggcgttcgccctcgtcaacaaggcca 321
>dbj|AK103324.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125K07, full insert sequence Length = 1512 Score = 83.8 bits (42), Expect = 3e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 174 aaccccaaggacgactaccagcactggatcaaggacatgaggtggagcaccagcatcaag 233 ||||||| |||||||||||||||||||||||||||||||||| |||| || |||| | Sbjct: 738 aaccccagggacgactaccagcactggatcaaggacatgaggcacagcaacaagatcagg 797 Query: 234 gacgaggagggctaccccgccttcgc 259 |||||||| |||||||| || ||||| Sbjct: 798 gacgaggaaggctacccggcgttcgc 823 Score = 71.9 bits (36), Expect = 1e-09 Identities = 87/104 (83%) Strand = Plus / Plus Query: 173 caaccccaaggacgactaccagcactggatcaaggacatgaggtggagcaccagcatcaa 232 ||||||||||||||| ||||||||||| ||||||||||||||| ||||||| | || Sbjct: 218 caaccccaaggacgagcaccagcactggttcaaggacatgaggttcagcaccaaggtgaa 277 Query: 233 ggacgaggagggctaccccgccttcgccatcgtgaacaaggcca 276 ||||| ||||||| || || |||||| |||| |||||||||| Sbjct: 278 ggacggggagggcatgccggcgttcgccctcgtcaacaaggcca 321
>dbj|AK060899.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-D04, full insert sequence Length = 1239 Score = 79.8 bits (40), Expect = 4e-12 Identities = 73/84 (86%) Strand = Plus / Plus Query: 176 ccccaaggacgactaccagcactggatcaaggacatgaggtggagcaccagcatcaagga 235 ||||| |||||||||||||||||||||||||||||||||| |||| || |||| ||| Sbjct: 525 ccccagggacgactaccagcactggatcaaggacatgaggcacagcaacaagatcaggga 584 Query: 236 cgaggagggctaccccgccttcgc 259 |||||| |||||||| || ||||| Sbjct: 585 cgaggaaggctacccggcgttcgc 608 Score = 50.1 bits (25), Expect = 0.004 Identities = 70/85 (82%) Strand = Plus / Plus Query: 192 cagcactggatcaaggacatgaggtggagcaccagcatcaaggacgaggagggctacccc 251 ||||||||| ||||||||||||||| ||||||| | ||||||| ||||||| || Sbjct: 22 cagcactggttcaaggacatgaggttcagcaccaaggtgaaggacggggagggcatgccg 81 Query: 252 gccttcgccatcgtgaacaaggcca 276 || |||||| |||| |||||||||| Sbjct: 82 gcgttcgccctcgtcaacaaggcca 106
>ref|XM_479570.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1209 Score = 73.8 bits (37), Expect = 3e-10 Identities = 73/85 (85%) Strand = Plus / Plus Query: 192 cagcactggatcaaggacatgaggtggagcaccagcatcaaggacgaggagggctacccc 251 ||||||||| | |||||||||||| ||||| ||||||||||||||||| |||||||| Sbjct: 844 cagcactgggtgaaggacatgaggcacagcacgagcatcaaggacgaggaaggctacccg 903 Query: 252 gccttcgccatcgtgaacaaggcca 276 || ||||| | ||||||||||||| Sbjct: 904 gcgttcgcgctggtgaacaaggcca 928
>gb|BT018000.1| Zea mays clone EL01N0526G03.c mRNA sequence Length = 842 Score = 71.9 bits (36), Expect = 1e-09 Identities = 138/172 (80%) Strand = Plus / Plus Query: 102 aagatctactgccgcgccaaccccaactacgccatgtccgtgcgcaacggcaaggtggtg 161 ||||||| ||||||||||||| |||||| | || |||| ||| ||||| || ||| Sbjct: 57 aagatcttctgccgcgccaacgagaactactgcctggccgtccgcgacggcgccgtcgtg 116 Query: 162 ctcgcgccggccaaccccaaggacgactaccagcactggatcaaggacatgaggtggagc 221 || || |||| |||||||||||||||| ||||||||||| |||||||||| | | ||| Sbjct: 117 ctggccccggtcaaccccaaggacgaccaccagcactggtacaaggacatgcgcttcagc 176 Query: 222 accagcatcaaggacgaggagggctaccccgccttcgccatcgtgaacaagg 273 ||| | | |||||||||||||||||| |||||||| |||| ||||||| Sbjct: 177 acccgggtgcgggacgaggagggctacccggccttcgcgctcgtcaacaagg 228
>gb|BT016654.1| Zea mays clone Contig487 mRNA sequence Length = 905 Score = 65.9 bits (33), Expect = 6e-08 Identities = 66/77 (85%) Strand = Plus / Plus Query: 183 gacgactaccagcactggatcaaggacatgaggtggagcaccagcatcaaggacgaggag 242 ||||| |||||||||||||||||||||||| | |||| |||| ||||||||||||| Sbjct: 194 gacgagtaccagcactggatcaaggacatgcgccacagcaacagcgtcaaggacgaggaa 253 Query: 243 ggctaccccgccttcgc 259 || ||||| |||||||| Sbjct: 254 gggtacccggccttcgc 270
>gb|BT016442.1| Zea mays clone Contig275 mRNA sequence Length = 1443 Score = 63.9 bits (32), Expect = 2e-07 Identities = 113/140 (80%) Strand = Plus / Plus Query: 102 aagatctactgccgcgccaaccccaactacgccatgtccgtgcgcaacggcaaggtggtg 161 ||||||| ||||||||||||| |||||| | || |||| ||| ||||| || ||| Sbjct: 125 aagatcttctgccgcgccaacgagaactactgcctggccgtccgcgacggcgccgtcgtg 184 Query: 162 ctcgcgccggccaaccccaaggacgactaccagcactggatcaaggacatgaggtggagc 221 || || |||| |||||||||||||||| ||||||||||| |||||||||| | | ||| Sbjct: 185 ctggccccggtcaaccccaaggacgaccaccagcactggtacaaggacatgcgcttcagc 244 Query: 222 accagcatcaaggacgagga 241 ||| | ||||||||||||| Sbjct: 245 acccgggtcaaggacgagga 264 Score = 50.1 bits (25), Expect = 0.004 Identities = 37/41 (90%) Strand = Plus / Plus Query: 233 ggacgaggagggctaccccgccttcgccatcgtgaacaagg 273 |||||||||||||||||| |||||||| |||| ||||||| Sbjct: 754 ggacgaggagggctacccggccttcgcgctcgtcaacaagg 794
>gb|BT017376.1| Zea mays clone EL01N0325G07.c mRNA sequence Length = 778 Score = 60.0 bits (30), Expect = 4e-06 Identities = 111/138 (80%) Strand = Plus / Plus Query: 139 ccgtgcgcaacggcaaggtggtgctcgcgccggccaaccccaaggacgactaccagcact 198 |||| ||| ||||||| |||||||| || || |||||||| ||||| ||||||||| Sbjct: 192 ccgtccgcgacggcaacgtggtgctggcccccgccaacccgcgcgacgagcaccagcact 251 Query: 199 ggatcaaggacatgaggtggagcaccagcatcaaggacgaggagggctaccccgccttcg 258 || |||||||||| | | |||||| ||||||||||||||||| |||| || |||| Sbjct: 252 ggtacaaggacatgcgcttcagcacccaggtcaaggacgaggagggcaaccctgcgttcg 311 Query: 259 ccatcgtgaacaaggcca 276 || |||| |||||||||| Sbjct: 312 ccctcgtcaacaaggcca 329
>emb|Y08987.1|OSR40G2 O.sativa osr40g2 gene Length = 2101 Score = 50.1 bits (25), Expect = 0.004 Identities = 70/85 (82%) Strand = Plus / Plus Query: 192 cagcactggatcaaggacatgaggtggagcaccagcatcaaggacgaggagggctacccc 251 ||||||||| ||||||||||||||| ||||||| | ||||||| ||||||| || Sbjct: 893 cagcactggttcaaggacatgaggttcagcaccaaggtgaaggacggggagggcatgccg 952 Query: 252 gccttcgccatcgtgaacaaggcca 276 || |||||| |||| |||||||||| Sbjct: 953 gcgttcgccctcgtcaacaaggcca 977 Score = 48.1 bits (24), Expect = 0.015 Identities = 54/64 (84%) Strand = Plus / Plus Query: 196 actggatcaaggacatgaggtggagcaccagcatcaaggacgaggagggctaccccgcct 255 |||||||||||||||||||| |||| || |||| ||||||||| |||||||| || | Sbjct: 1601 actggatcaaggacatgaggcacagcaacaagatcagggacgaggaaggctacccggcgt 1660 Query: 256 tcgc 259 |||| Sbjct: 1661 tcgc 1664
>dbj|AB205052.1| Chrysanthemum x morifolium ZDS mRNA for zeta-carotene desaturase, complete cds Length = 2144 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 198 tggatcaaggacatgaggtgga 219 |||||||||||||||||||||| Sbjct: 541 tggatcaaggacatgaggtgga 562
>gb|DQ412572.1| Lycopersicon esculentum zeta-carotene desaturase (ZDS) mRNA, complete cds Length = 1850 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 198 tggatcaaggacatgaggtgga 219 |||||||||||||||||||||| Sbjct: 296 tggatcaaggacatgaggtgga 317
>dbj|AB180798.1| Actinobacterium Aac-15 gene for DNA gyrase subunit B, partial cds Length = 1197 Score = 44.1 bits (22), Expect = 0.23 Identities = 25/26 (96%) Strand = Plus / Plus Query: 230 caaggacgaggagggctaccccgcct 255 |||||||||||||||| ||||||||| Sbjct: 318 caaggacgaggagggcaaccccgcct 343
>emb|X89897.1|CAZDSGENE C.annuum mRNA for zeta-carotene / neurosporene dehydrogenase Length = 1982 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 198 tggatcaaggacatgaggtgga 219 |||||||||||||||||||||| Sbjct: 305 tggatcaaggacatgaggtgga 326
>gb|AF195507.1|AF195507 Lycopersicon esculentum zeta-carotene desaturase (zds) mRNA, complete cds Length = 1931 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 198 tggatcaaggacatgaggtgga 219 |||||||||||||||||||||| Sbjct: 396 tggatcaaggacatgaggtgga 417
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 140 cgtgcgcaacggcaaggtggtgct 163 ||||||| |||||||||||||||| Sbjct: 778919 cgtgcgcgacggcaaggtggtgct 778896
>ref|XM_962998.1| PREDICTED: Tribolium castaneum similar to CG15013-PA, isoform A (LOC656469), mRNA Length = 1836 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 gccggggtacgcgcccccgg 27 |||||||||||||||||||| Sbjct: 135 gccggggtacgcgcccccgg 154
>emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete genome; segment 1/16 Length = 347356 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 cgcaacggcaaggtggtgct 163 |||||||||||||||||||| Sbjct: 23975 cgcaacggcaaggtggtgct 23956
>emb|BX640423.1| Bordetella parapertussis strain 12822, complete genome; segment 1/14 Length = 348251 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 cgcaacggcaaggtggtgct 163 |||||||||||||||||||| Sbjct: 23976 cgcaacggcaaggtggtgct 23957
>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12 Length = 346359 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 cgcaacggcaaggtggtgct 163 |||||||||||||||||||| Sbjct: 23976 cgcaacggcaaggtggtgct 23957
>dbj|AB017370.1| Gentiana lutea mRNA for zeta-Carotene Desaturase, complete cds Length = 2228 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 gatcaaggacatgaggtgga 219 |||||||||||||||||||| Sbjct: 520 gatcaaggacatgaggtgga 539
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 gtgcgcaacggcaaggtggt 160 |||||||||||||||||||| Sbjct: 11769857 gtgcgcaacggcaaggtggt 11769876
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 71 cggtcggccgatgccgccgcagcc 94 ||||| |||||||||||||||||| Sbjct: 4404469 cggtcagccgatgccgccgcagcc 4404446
>ref|XM_316089.2| Anopheles gambiae str. PEST ENSANGP00000005867 (ENSANGG00000004462), partial mRNA Length = 1563 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 gacatgaggtggagcaccagcatc 230 ||||||| |||||||||||||||| Sbjct: 568 gacatgacgtggagcaccagcatc 591
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 cgatgccgccgcagcctacg 98 |||||||||||||||||||| Sbjct: 3537048 cgatgccgccgcagcctacg 3537067
>gb|DQ192189.1| Daucus carota subsp. sativus putative zeta carotene desaturase (ZDS2) mRNA, complete cds Length = 2038 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 gatcaaggacatgaggtgga 219 |||||||||||||||||||| Sbjct: 369 gatcaaggacatgaggtgga 388 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,576,158 Number of Sequences: 3902068 Number of extensions: 1576158 Number of successful extensions: 28677 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28309 Number of HSP's gapped (non-prelim): 359 length of query: 276 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 254 effective length of database: 17,147,199,772 effective search space: 4355388742088 effective search space used: 4355388742088 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
