ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal21o12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY838897.1| Oryza sativa (japonica cultivar-group) 9-cis-epoxycarotenoid dioxygenase 1 (NCED1) mRNA, complete cds Length = 2119 Score = 339 bits (171), Expect = 3e-90 Identities = 291/332 (87%) Strand = Plus / Plus Query: 4 cttcggcgtgggcgaccccatgcccaaaatcggcggggtggccaagctcgacttcgaccg 63 ||||||||| ||||||||| |||||| |||||||| ||||||||||||||||||||||| Sbjct: 1669 cttcggcgtcggcgaccccgcgcccaagatcggcggcgtggccaagctcgacttcgaccg 1728 Query: 64 tgcaggccacggcgactgcaccgtggcgcgccgggacttcgggccggggtgcttcgccgg 123 || ||| | ||||||||||||||||||| || ||||||||||| |||||||||||||| Sbjct: 1729 cgccggcgagggcgactgcaccgtggcgcagcgcgacttcgggcccgggtgcttcgccgg 1788 Query: 124 ggagccattcttcgtctccgacgacgtcgaggggaacggcgacgaggacgacggctacgt 183 || || |||||||| |||||||||||||||| |||||| ||||||| ||||| ||| | Sbjct: 1789 cgaaccgttcttcgtggccgacgacgtcgagggcaacggcaacgaggatgacgggtactt 1848 Query: 184 ggtgtgctacgtgcacgacgagggcaccggcgacaacnggttcgtggtgatggacgcaca 243 |||||||||||| |||||||||| ||||||||| ||| ||||||||||||||||||| | Sbjct: 1849 ggtgtgctacgtccacgacgaggccaccggcgagaaccggttcgtggtgatggacgcgcg 1908 Query: 244 gtcgcccgacctggacatcgtcgccgaggtgcagcttccatcccgcgtcccctacggctt 303 |||||| |||||||| |||||||| ||||||||||| || ||||||||||||||||| Sbjct: 1909 gtcgccggacctggagatcgtcgcggaggtgcagctgcccggacgcgtcccctacggctt 1968 Query: 304 ccacggcctgttngtnaggcaggccgagctcc 335 ||| |||||||| || | |||||||||||||| Sbjct: 1969 ccatggcctgttcgtcacgcaggccgagctcc 2000
>ref|XM_506928.1| PREDICTED Oryza sativa (japonica cultivar-group), P0724B10.24 mRNA Length = 2079 Score = 339 bits (171), Expect = 3e-90 Identities = 291/332 (87%) Strand = Plus / Plus Query: 4 cttcggcgtgggcgaccccatgcccaaaatcggcggggtggccaagctcgacttcgaccg 63 ||||||||| ||||||||| |||||| |||||||| ||||||||||||||||||||||| Sbjct: 1587 cttcggcgtcggcgaccccgcgcccaagatcggcggcgtggccaagctcgacttcgaccg 1646 Query: 64 tgcaggccacggcgactgcaccgtggcgcgccgggacttcgggccggggtgcttcgccgg 123 || ||| | ||||||||||||||||||| || ||||||||||| |||||||||||||| Sbjct: 1647 cgccggcgagggcgactgcaccgtggcgcagcgcgacttcgggcccgggtgcttcgccgg 1706 Query: 124 ggagccattcttcgtctccgacgacgtcgaggggaacggcgacgaggacgacggctacgt 183 || || |||||||| |||||||||||||||| |||||| ||||||| ||||| ||| | Sbjct: 1707 cgaaccgttcttcgtggccgacgacgtcgagggcaacggcaacgaggatgacgggtactt 1766 Query: 184 ggtgtgctacgtgcacgacgagggcaccggcgacaacnggttcgtggtgatggacgcaca 243 |||||||||||| |||||||||| ||||||||| ||| ||||||||||||||||||| | Sbjct: 1767 ggtgtgctacgtccacgacgaggccaccggcgagaaccggttcgtggtgatggacgcgcg 1826 Query: 244 gtcgcccgacctggacatcgtcgccgaggtgcagcttccatcccgcgtcccctacggctt 303 |||||| |||||||| |||||||| ||||||||||| || ||||||||||||||||| Sbjct: 1827 gtcgccggacctggagatcgtcgcggaggtgcagctgcccggacgcgtcccctacggctt 1886 Query: 304 ccacggcctgttngtnaggcaggccgagctcc 335 ||| |||||||| || | |||||||||||||| Sbjct: 1887 ccatggcctgttcgtcacgcaggccgagctcc 1918
>ref|XM_467354.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2079 Score = 339 bits (171), Expect = 3e-90 Identities = 291/332 (87%) Strand = Plus / Plus Query: 4 cttcggcgtgggcgaccccatgcccaaaatcggcggggtggccaagctcgacttcgaccg 63 ||||||||| ||||||||| |||||| |||||||| ||||||||||||||||||||||| Sbjct: 1587 cttcggcgtcggcgaccccgcgcccaagatcggcggcgtggccaagctcgacttcgaccg 1646 Query: 64 tgcaggccacggcgactgcaccgtggcgcgccgggacttcgggccggggtgcttcgccgg 123 || ||| | ||||||||||||||||||| || ||||||||||| |||||||||||||| Sbjct: 1647 cgccggcgagggcgactgcaccgtggcgcagcgcgacttcgggcccgggtgcttcgccgg 1706 Query: 124 ggagccattcttcgtctccgacgacgtcgaggggaacggcgacgaggacgacggctacgt 183 || || |||||||| |||||||||||||||| |||||| ||||||| ||||| ||| | Sbjct: 1707 cgaaccgttcttcgtggccgacgacgtcgagggcaacggcaacgaggatgacgggtactt 1766 Query: 184 ggtgtgctacgtgcacgacgagggcaccggcgacaacnggttcgtggtgatggacgcaca 243 |||||||||||| |||||||||| ||||||||| ||| ||||||||||||||||||| | Sbjct: 1767 ggtgtgctacgtccacgacgaggccaccggcgagaaccggttcgtggtgatggacgcgcg 1826 Query: 244 gtcgcccgacctggacatcgtcgccgaggtgcagcttccatcccgcgtcccctacggctt 303 |||||| |||||||| |||||||| ||||||||||| || ||||||||||||||||| Sbjct: 1827 gtcgccggacctggagatcgtcgcggaggtgcagctgcccggacgcgtcccctacggctt 1886 Query: 304 ccacggcctgttngtnaggcaggccgagctcc 335 ||| |||||||| || | |||||||||||||| Sbjct: 1887 ccatggcctgttcgtcacgcaggccgagctcc 1918
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 339 bits (171), Expect = 3e-90 Identities = 291/332 (87%) Strand = Plus / Minus Query: 4 cttcggcgtgggcgaccccatgcccaaaatcggcggggtggccaagctcgacttcgaccg 63 ||||||||| ||||||||| |||||| |||||||| ||||||||||||||||||||||| Sbjct: 29045084 cttcggcgtcggcgaccccgcgcccaagatcggcggcgtggccaagctcgacttcgaccg 29045025 Query: 64 tgcaggccacggcgactgcaccgtggcgcgccgggacttcgggccggggtgcttcgccgg 123 || ||| | ||||||||||||||||||| || ||||||||||| |||||||||||||| Sbjct: 29045024 cgccggcgagggcgactgcaccgtggcgcagcgcgacttcgggcccgggtgcttcgccgg 29044965 Query: 124 ggagccattcttcgtctccgacgacgtcgaggggaacggcgacgaggacgacggctacgt 183 || || |||||||| |||||||||||||||| |||||| ||||||| ||||| ||| | Sbjct: 29044964 cgaaccgttcttcgtggccgacgacgtcgagggcaacggcaacgaggatgacgggtactt 29044905 Query: 184 ggtgtgctacgtgcacgacgagggcaccggcgacaacnggttcgtggtgatggacgcaca 243 |||||||||||| |||||||||| ||||||||| ||| ||||||||||||||||||| | Sbjct: 29044904 ggtgtgctacgtccacgacgaggccaccggcgagaaccggttcgtggtgatggacgcgcg 29044845 Query: 244 gtcgcccgacctggacatcgtcgccgaggtgcagcttccatcccgcgtcccctacggctt 303 |||||| |||||||| |||||||| ||||||||||| || ||||||||||||||||| Sbjct: 29044844 gtcgccggacctggagatcgtcgcggaggtgcagctgcccggacgcgtcccctacggctt 29044785 Query: 304 ccacggcctgttngtnaggcaggccgagctcc 335 ||| |||||||| || | |||||||||||||| Sbjct: 29044784 ccatggcctgttcgtcacgcaggccgagctcc 29044753 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 cgacgaggacgacggctacg 182 |||||||||||||||||||| Sbjct: 32012068 cgacgaggacgacggctacg 32012087 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 gcttcggcgtgggcgacccc 22 |||||||||||||||||||| Sbjct: 2042217 gcttcggcgtgggcgacccc 2042236
>dbj|AP005825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0724B10 Length = 169143 Score = 339 bits (171), Expect = 3e-90 Identities = 291/332 (87%) Strand = Plus / Minus Query: 4 cttcggcgtgggcgaccccatgcccaaaatcggcggggtggccaagctcgacttcgaccg 63 ||||||||| ||||||||| |||||| |||||||| ||||||||||||||||||||||| Sbjct: 91249 cttcggcgtcggcgaccccgcgcccaagatcggcggcgtggccaagctcgacttcgaccg 91190 Query: 64 tgcaggccacggcgactgcaccgtggcgcgccgggacttcgggccggggtgcttcgccgg 123 || ||| | ||||||||||||||||||| || ||||||||||| |||||||||||||| Sbjct: 91189 cgccggcgagggcgactgcaccgtggcgcagcgcgacttcgggcccgggtgcttcgccgg 91130 Query: 124 ggagccattcttcgtctccgacgacgtcgaggggaacggcgacgaggacgacggctacgt 183 || || |||||||| |||||||||||||||| |||||| ||||||| ||||| ||| | Sbjct: 91129 cgaaccgttcttcgtggccgacgacgtcgagggcaacggcaacgaggatgacgggtactt 91070 Query: 184 ggtgtgctacgtgcacgacgagggcaccggcgacaacnggttcgtggtgatggacgcaca 243 |||||||||||| |||||||||| ||||||||| ||| ||||||||||||||||||| | Sbjct: 91069 ggtgtgctacgtccacgacgaggccaccggcgagaaccggttcgtggtgatggacgcgcg 91010 Query: 244 gtcgcccgacctggacatcgtcgccgaggtgcagcttccatcccgcgtcccctacggctt 303 |||||| |||||||| |||||||| ||||||||||| || ||||||||||||||||| Sbjct: 91009 gtcgccggacctggagatcgtcgcggaggtgcagctgcccggacgcgtcccctacggctt 90950 Query: 304 ccacggcctgttngtnaggcaggccgagctcc 335 ||| |||||||| || | |||||||||||||| Sbjct: 90949 ccatggcctgttcgtcacgcaggccgagctcc 90918
>dbj|AK099580.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040C20, full insert sequence Length = 2080 Score = 339 bits (171), Expect = 3e-90 Identities = 291/332 (87%) Strand = Plus / Plus Query: 4 cttcggcgtgggcgaccccatgcccaaaatcggcggggtggccaagctcgacttcgaccg 63 ||||||||| ||||||||| |||||| |||||||| ||||||||||||||||||||||| Sbjct: 1587 cttcggcgtcggcgaccccgcgcccaagatcggcggcgtggccaagctcgacttcgaccg 1646 Query: 64 tgcaggccacggcgactgcaccgtggcgcgccgggacttcgggccggggtgcttcgccgg 123 || ||| | ||||||||||||||||||| || ||||||||||| |||||||||||||| Sbjct: 1647 cgccggcgagggcgactgcaccgtggcgcagcgcgacttcgggcccgggtgcttcgccgg 1706 Query: 124 ggagccattcttcgtctccgacgacgtcgaggggaacggcgacgaggacgacggctacgt 183 || || |||||||| |||||||||||||||| |||||| ||||||| ||||| ||| | Sbjct: 1707 cgaaccgttcttcgtggccgacgacgtcgagggcaacggcaacgaggatgacgggtactt 1766 Query: 184 ggtgtgctacgtgcacgacgagggcaccggcgacaacnggttcgtggtgatggacgcaca 243 |||||||||||| |||||||||| ||||||||| ||| ||||||||||||||||||| | Sbjct: 1767 ggtgtgctacgtccacgacgaggccaccggcgagaaccggttcgtggtgatggacgcgcg 1826 Query: 244 gtcgcccgacctggacatcgtcgccgaggtgcagcttccatcccgcgtcccctacggctt 303 |||||| |||||||| |||||||| ||||||||||| || ||||||||||||||||| Sbjct: 1827 gtcgccggacctggagatcgtcgcggaggtgcagctgcccggacgcgtcccctacggctt 1886 Query: 304 ccacggcctgttngtnaggcaggccgagctcc 335 ||| |||||||| || | |||||||||||||| Sbjct: 1887 ccatggcctgttcgtcacgcaggccgagctcc 1918
>dbj|AK064824.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F03, full insert sequence Length = 2080 Score = 339 bits (171), Expect = 3e-90 Identities = 291/332 (87%) Strand = Plus / Plus Query: 4 cttcggcgtgggcgaccccatgcccaaaatcggcggggtggccaagctcgacttcgaccg 63 ||||||||| ||||||||| |||||| |||||||| ||||||||||||||||||||||| Sbjct: 1587 cttcggcgtcggcgaccccgcgcccaagatcggcggcgtggccaagctcgacttcgaccg 1646 Query: 64 tgcaggccacggcgactgcaccgtggcgcgccgggacttcgggccggggtgcttcgccgg 123 || ||| | ||||||||||||||||||| || ||||||||||| |||||||||||||| Sbjct: 1647 cgccggcgagggcgactgcaccgtggcgcagcgcgacttcgggcccgggtgcttcgccgg 1706 Query: 124 ggagccattcttcgtctccgacgacgtcgaggggaacggcgacgaggacgacggctacgt 183 || || |||||||| |||||||||||||||| |||||| ||||||| ||||| ||| | Sbjct: 1707 cgaaccgttcttcgtggccgacgacgtcgagggcaacggcaacgaggatgacgggtactt 1766 Query: 184 ggtgtgctacgtgcacgacgagggcaccggcgacaacnggttcgtggtgatggacgcaca 243 |||||||||||| |||||||||| ||||||||| ||| ||||||||||||||||||| | Sbjct: 1767 ggtgtgctacgtccacgacgaggccaccggcgagaaccggttcgtggtgatggacgcgcg 1826 Query: 244 gtcgcccgacctggacatcgtcgccgaggtgcagcttccatcccgcgtcccctacggctt 303 |||||| |||||||| |||||||| ||||||||||| || ||||||||||||||||| Sbjct: 1827 gtcgccggacctggagatcgtcgcggaggtgcagctgcccggacgcgtcccctacggctt 1886 Query: 304 ccacggcctgttngtnaggcaggccgagctcc 335 ||| |||||||| || | |||||||||||||| Sbjct: 1887 ccatggcctgttcgtcacgcaggccgagctcc 1918
>gb|AY838901.1| Oryza sativa (japonica cultivar-group) 9-cis-epoxycarotenoid dioxygenase 5 (NCED5) mRNA, complete cds Length = 2041 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Plus Query: 287 cgcgtcccctacggcttccacggc 310 |||||||||||||||||||||||| Sbjct: 1878 cgcgtcccctacggcttccacggc 1901
>gb|AY838900.1| Oryza sativa (japonica cultivar-group) 9-cis-epoxycarotenoid dioxygenase 4 (NCED4) mRNA, complete cds Length = 1949 Score = 48.1 bits (24), Expect = 0.018 Identities = 36/40 (90%) Strand = Plus / Plus Query: 167 gaggacgacggctacgtggtgtgctacgtgcacgacgagg 206 |||||||||||| ||||| |||||| ||| |||||||||| Sbjct: 1667 gaggacgacggccacgtgctgtgcttcgtccacgacgagg 1706
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Plus Query: 287 cgcgtcccctacggcttccacggc 310 |||||||||||||||||||||||| Sbjct: 26303663 cgcgtcccctacggcttccacggc 26303686
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 48.1 bits (24), Expect = 0.018 Identities = 36/40 (90%) Strand = Plus / Plus Query: 167 gaggacgacggctacgtggtgtgctacgtgcacgacgagg 206 |||||||||||| ||||| |||||| ||| |||||||||| Sbjct: 2904523 gaggacgacggccacgtgctgtgcttcgtccacgacgagg 2904562
>dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0050B07 Length = 142134 Score = 48.1 bits (24), Expect = 0.018 Identities = 36/40 (90%) Strand = Plus / Plus Query: 167 gaggacgacggctacgtggtgtgctacgtgcacgacgagg 206 |||||||||||| ||||| |||||| ||| |||||||||| Sbjct: 74810 gaggacgacggccacgtgctgtgcttcgtccacgacgagg 74849
>dbj|AK119780.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-D12, full insert sequence Length = 2144 Score = 48.1 bits (24), Expect = 0.018 Identities = 36/40 (90%) Strand = Plus / Plus Query: 167 gaggacgacggctacgtggtgtgctacgtgcacgacgagg 206 |||||||||||| ||||| |||||| ||| |||||||||| Sbjct: 1686 gaggacgacggccacgtgctgtgcttcgtccacgacgagg 1725
>dbj|AK107649.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-131-F10, full insert sequence Length = 1475 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Plus Query: 287 cgcgtcccctacggcttccacggc 310 |||||||||||||||||||||||| Sbjct: 790 cgcgtcccctacggcttccacggc 813
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Plus Query: 287 cgcgtcccctacggcttccacggc 310 |||||||||||||||||||||||| Sbjct: 26231839 cgcgtcccctacggcttccacggc 26231862
>emb|AL731885.4|CNS08C8P Oryza sativa chromosome 12, . BAC OSJNBb0016A10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 133978 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Plus Query: 287 cgcgtcccctacggcttccacggc 310 |||||||||||||||||||||||| Sbjct: 67647 cgcgtcccctacggcttccacggc 67670
>emb|AL845347.4|CNS08CB9 Oryza sativa chromosome 12, . BAC OSJNBb0101I10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131689 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Plus Query: 287 cgcgtcccctacggcttccacggc 310 |||||||||||||||||||||||| Sbjct: 17942 cgcgtcccctacggcttccacggc 17965
>gb|AY838899.1| Oryza sativa (japonica cultivar-group) 9-cis-epoxycarotenoid dioxygenase 3 (NCED3) mRNA, complete cds Length = 2060 Score = 46.1 bits (23), Expect = 0.072 Identities = 35/39 (89%) Strand = Plus / Plus Query: 272 gtgcagcttccatcccgcgtcccctacggcttccacggc 310 |||||||| || |||||||| || ||||||||||||||| Sbjct: 1920 gtgcagctgccgtcccgcgtgccgtacggcttccacggc 1958
>ref|NM_102219.2| Arabidopsis thaliana unknown protein AT1G23710 mRNA, complete cds Length = 1176 Score = 46.1 bits (23), Expect = 0.072 Identities = 23/23 (100%) Strand = Plus / Minus Query: 131 ttcttcgtctccgacgacgtcga 153 ||||||||||||||||||||||| Sbjct: 846 ttcttcgtctccgacgacgtcga 824
>emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0007L18 of library OSJNBa from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 183327 Score = 46.1 bits (23), Expect = 0.072 Identities = 35/39 (89%) Strand = Plus / Plus Query: 272 gtgcagcttccatcccgcgtcccctacggcttccacggc 310 |||||||| || |||||||| || ||||||||||||||| Sbjct: 144721 gtgcagctgccgtcccgcgtgccgtacggcttccacggc 144759
>gb|DQ145930.1| Hordeum vulgare subsp. vulgare 9-cis-epoxycarotenoid dioxygenase 1 mRNA, complete cds Length = 2376 Score = 46.1 bits (23), Expect = 0.072 Identities = 35/39 (89%) Strand = Plus / Plus Query: 272 gtgcagcttccatcccgcgtcccctacggcttccacggc 310 |||||||| || ||||| |||||||| |||||||||||| Sbjct: 1735 gtgcagctgccgtcccgggtcccctatggcttccacggc 1773 Score = 46.1 bits (23), Expect = 0.072 Identities = 41/47 (87%) Strand = Plus / Plus Query: 160 cggcgacgaggacgacggctacgtggtgtgctacgtgcacgacgagg 206 ||||| ||||||||||||||||||| | | || ||||| |||||||| Sbjct: 1629 cggcgccgaggacgacggctacgtgctctccttcgtgcgcgacgagg 1675
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.072 Identities = 35/39 (89%) Strand = Plus / Plus Query: 272 gtgcagcttccatcccgcgtcccctacggcttccacggc 310 |||||||| || |||||||| || ||||||||||||||| Sbjct: 24766032 gtgcagctgccgtcccgcgtgccgtacggcttccacggc 24766070
>gb|AF325099.1|AF325099 Arabidopsis thaliana unknown protein (F5O8.26) mRNA, complete cds Length = 888 Score = 46.1 bits (23), Expect = 0.072 Identities = 23/23 (100%) Strand = Plus / Minus Query: 131 ttcttcgtctccgacgacgtcga 153 ||||||||||||||||||||||| Sbjct: 734 ttcttcgtctccgacgacgtcga 712
>emb|BX814948.1|CNS0ABE7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS1ZH08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1138 Score = 46.1 bits (23), Expect = 0.072 Identities = 23/23 (100%) Strand = Plus / Minus Query: 131 ttcttcgtctccgacgacgtcga 153 ||||||||||||||||||||||| Sbjct: 808 ttcttcgtctccgacgacgtcga 786
>gb|BT005865.1| Arabidopsis thaliana At1g23710 gene, complete cds Length = 888 Score = 46.1 bits (23), Expect = 0.072 Identities = 23/23 (100%) Strand = Plus / Minus Query: 131 ttcttcgtctccgacgacgtcga 153 ||||||||||||||||||||||| Sbjct: 734 ttcttcgtctccgacgacgtcga 712
>gb|AY087535.1| Arabidopsis thaliana clone 36437 mRNA, complete sequence Length = 1100 Score = 46.1 bits (23), Expect = 0.072 Identities = 23/23 (100%) Strand = Plus / Minus Query: 131 ttcttcgtctccgacgacgtcga 153 ||||||||||||||||||||||| Sbjct: 852 ttcttcgtctccgacgacgtcga 830
>gb|AC005990.1|F5O8 Arabidopsis thaliana chromosome 1 BAC F5O8 sequence, complete sequence Length = 99923 Score = 46.1 bits (23), Expect = 0.072 Identities = 23/23 (100%) Strand = Plus / Minus Query: 131 ttcttcgtctccgacgacgtcga 153 ||||||||||||||||||||||| Sbjct: 60297 ttcttcgtctccgacgacgtcga 60275
>emb|X77865.1|SGKSACPG S.griseus genes for ketosynthase, acyl carrier protein, ketoreductase, cyclase and dehydrase Length = 5364 Score = 44.1 bits (22), Expect = 0.29 Identities = 28/30 (93%) Strand = Plus / Plus Query: 142 cgacgacgtcgaggggaacggcgacgagga 171 |||| ||||||||| ||||||||||||||| Sbjct: 4176 cgaccacgtcgaggagaacggcgacgagga 4205
>ref|NM_111838.2| Arabidopsis thaliana unknown protein AT3G10030 mRNA, complete cds Length = 1990 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 ggaacggcgacgaggacgacg 176 ||||||||||||||||||||| Sbjct: 272 ggaacggcgacgaggacgacg 292
>gb|AY742216.1| Rattus norvegicus sulfatase FP2 mRNA, complete cds Length = 4172 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 cgccgggacttcgggccgggg 112 ||||||||||||||||||||| Sbjct: 514 cgccgggacttcgggccgggg 534
>gb|AC010927.5|ATAC010927 Arabidopsis thaliana chromosome III BAC T22K18 genomic sequence, complete sequence Length = 96232 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 ggaacggcgacgaggacgacg 176 ||||||||||||||||||||| Sbjct: 48863 ggaacggcgacgaggacgacg 48883
>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16 Length = 346274 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 246 cgcccgacctggacatcgtcgccga 270 |||||||||||||||||| |||||| Sbjct: 48138 cgcccgacctggacatcgacgccga 48162
>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14 Length = 348014 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 246 cgcccgacctggacatcgtcgccga 270 |||||||||||||||||| |||||| Sbjct: 312016 cgcccgacctggacatcgacgccga 312040
>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12 Length = 349672 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 246 cgcccgacctggacatcgtcgccga 270 |||||||||||||||||| |||||| Sbjct: 172229 cgcccgacctggacatcgacgccga 172205
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 ggaacggcgacgaggacgacg 176 ||||||||||||||||||||| Sbjct: 32524 ggaacggcgacgaggacgacg 32504
>gb|AY120687.1| Arabidopsis thaliana AT3g10030/T22K18_15 mRNA, complete cds Length = 1629 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 ggaacggcgacgaggacgacg 176 ||||||||||||||||||||| Sbjct: 158 ggaacggcgacgaggacgacg 178
>gb|AF375431.1| Arabidopsis thaliana AT3g10030/T22K18_15 mRNA, complete cds Length = 1983 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 ggaacggcgacgaggacgacg 176 ||||||||||||||||||||| Sbjct: 272 ggaacggcgacgaggacgacg 292
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 254 ctggacatcgtcgccgaggtgcagc 278 |||||||| |||||||||||||||| Sbjct: 3236682 ctggacatggtcgccgaggtgcagc 3236706
>dbj|AK129316.1| Mus musculus mRNA for mKIAA1247 protein Length = 3925 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 cgccgggacttcgggccgggg 112 ||||||||||||||||||||| Sbjct: 295 cgccgggacttcgggccgggg 315
>emb|AL589873.11| Mouse DNA sequence from clone RP23-120P1 on chromosome 2, complete sequence Length = 170936 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 92 cgccgggacttcgggccgggg 112 ||||||||||||||||||||| Sbjct: 114760 cgccgggacttcgggccgggg 114740
>dbj|D78198.1| Pimelobacter sp. DNA for trehalose synthase, complete cds Length = 2304 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 193 cgtgcacgacgagggcaccggcgac 217 |||||||||||||| |||||||||| Sbjct: 228 cgtgcacgacgaggtcaccggcgac 252
>ref|XM_550600.1| Oryza sativa (japonica cultivar-group), mRNA Length = 276 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 acggcgacgaggacgacggc 178 |||||||||||||||||||| Sbjct: 191 acggcgacgaggacgacggc 210
>ref|XM_464074.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2103 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 gcttcggcgtgggcgacccc 22 |||||||||||||||||||| Sbjct: 848 gcttcggcgtgggcgacccc 867
>gb|AF488413.1| Oryza sativa chromosome 6 BAC 134P10, complete sequence Length = 136866 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 acggcgacgaggacgacggc 178 |||||||||||||||||||| Sbjct: 39706 acggcgacgaggacgacggc 39687
>ref|NM_001032745.1| Takifugu rubripes BAW protein (BAW), mRNA Length = 1786 Score = 40.1 bits (20), Expect = 4.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 143 gacgacgtcgaggggaacggcgacgaggacgacggc 178 ||||||||||||||||||| || ||| || |||||| Sbjct: 1114 gacgacgtcgaggggaacgccggcgaagaagacggc 1149
>ref|XM_504976.1| Yarrowia lipolytica CLIB122, YALI0F04059g predicted mRNA Length = 1386 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 acggcgacgaggacgacggctacg 182 |||||||||||||||| ||||||| Sbjct: 779 acggcgacgaggacgatggctacg 802
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 ctacggcttccacggcctgt 314 |||||||||||||||||||| Sbjct: 1066454 ctacggcttccacggcctgt 1066435
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 4.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 160 cggcgacgaggacgacggctacgtggtg 187 |||||||||||| |||||||||| |||| Sbjct: 4078546 cggcgacgaggaggacggctacgaggtg 4078519
>emb|BX640421.1| Bordetella pertussis strain Tohama I, complete genome; segment 11/12 Length = 349726 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 81 gcaccgtggcgcgccgggacttcg 104 |||||||||||||||||| ||||| Sbjct: 62679 gcaccgtggcgcgccgggccttcg 62656
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 ctacggcttccacggcctgt 314 |||||||||||||||||||| Sbjct: 2737009 ctacggcttccacggcctgt 2736990
>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome Length = 230138 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 aacggcgacgaggacgacgg 177 |||||||||||||||||||| Sbjct: 70878 aacggcgacgaggacgacgg 70859
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 acggcgacgaggacgacggc 178 |||||||||||||||||||| Sbjct: 1719491 acggcgacgaggacgacggc 1719472
>dbj|AP000559.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0493C11 Length = 143113 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 acggcgacgaggacgacggc 178 |||||||||||||||||||| Sbjct: 122662 acggcgacgaggacgacggc 122643
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 cgacctggacatcgtcgccg 269 |||||||||||||||||||| Sbjct: 4418147 cgacctggacatcgtcgccg 4418128
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 cgacctggacatcgtcgccg 269 |||||||||||||||||||| Sbjct: 576648 cgacctggacatcgtcgccg 576629
>dbj|AP002542.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0679C08 Length = 156266 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 acggcgacgaggacgacggc 178 |||||||||||||||||||| Sbjct: 44640 acggcgacgaggacgacggc 44621
>gb|AE005000.1| Halobacterium sp. NRC-1 section 31 of 170 of the complete genome Length = 11487 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 acggcgacgaggacgacggc 178 |||||||||||||||||||| Sbjct: 5971 acggcgacgaggacgacggc 5990
>dbj|AP004159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1175_B01 Length = 96191 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 cgacgaggacgacggctacg 182 |||||||||||||||||||| Sbjct: 32443 cgacgaggacgacggctacg 32462
>dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0026E05 Length = 159860 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 gcttcggcgtgggcgacccc 22 |||||||||||||||||||| Sbjct: 92425 gcttcggcgtgggcgacccc 92444
>gb|AC152831.2| Ornithorhynchus anatinus chromosome UNK clone OABb-168A1, complete sequence Length = 139370 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 ccgggacttcgggccggggt 113 |||||||||||||||||||| Sbjct: 61631 ccgggacttcgggccggggt 61650
>gb|U95953.1|ZMU95953 Zea mays viviparous-14 (vp14) mRNA, complete cds Length = 2498 Score = 40.1 bits (20), Expect = 4.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 275 cagcttccatcccgcgtcccctacggcttccacggc 310 ||||| || |||||||| |||| ||||||||||||| Sbjct: 1837 cagctgccgtcccgcgtgcccttcggcttccacggc 1872
>gb|AF153879.1|AF153879 Fugu rubripes BAW (BAW) mRNA, complete cds Length = 1786 Score = 40.1 bits (20), Expect = 4.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 143 gacgacgtcgaggggaacggcgacgaggacgacggc 178 ||||||||||||||||||| || ||| || |||||| Sbjct: 1114 gacgacgtcgaggggaacgccggcgaagaagacggc 1149
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 159 acggcgacgaggacgacggctacg 182 |||||||||||||||| ||||||| Sbjct: 606823 acggcgacgaggacgatggctacg 606800 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,373,501 Number of Sequences: 3902068 Number of extensions: 1373501 Number of successful extensions: 29169 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28411 Number of HSP's gapped (non-prelim): 751 length of query: 337 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 315 effective length of database: 17,147,199,772 effective search space: 5401367928180 effective search space used: 5401367928180 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
