ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal22d05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478119.1| Oryza sativa (japonica cultivar-group), mRNA 157 3e-35
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 107 2e-20
3dbj|AP004348.4| Oryza sativa (japonica cultivar-group) genomic D... 107 2e-20
4dbj|AP003849.2| Oryza sativa (japonica cultivar-group) genomic D... 107 2e-20
5emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete ... 46 0.071
6emb|BX640433.1| Bordetella parapertussis strain 12822, complete ... 46 0.071
7emb|BX640413.1| Bordetella pertussis strain Tohama I, complete g... 46 0.071
8gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 44 0.28
9emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 44 0.28
10gb|CP000249.1| Frankia sp. CcI3, complete genome 44 0.28
11ref|XM_507328.1| PREDICTED Oryza sativa (japonica cultivar-group... 42 1.1
12ref|XM_483721.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.1
13dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
14dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
15gb|AC040169.7| Homo sapiens chromosome 16 clone RP11-505K9, comp... 42 1.1
16dbj|AP004044.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
17dbj|AP005480.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
18dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
19dbj|AK099230.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
20dbj|AK072840.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
21ref|XM_468440.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.4
22emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete ... 40 4.4
23gb|AC154839.3| Mus musculus BAC clone RP23-61L24 from chromosome... 40 4.4
24gb|AC155301.2| Mus musculus BAC clone RP24-216J21 from chromosom... 40 4.4
25dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
26dbj|AP004020.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
27dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
28gb|AC119189.8| Mus musculus chromosome 1, clone RP24-178E16, com... 40 4.4
29dbj|AK110424.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.4
30dbj|AK069277.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.4
31gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.4
32emb|CT010471.11| Mouse DNA sequence from clone RP23-20A5 on chro... 40 4.4
33emb|AL928775.2|CNS08CC5 Oryza sativa chromosome 12, . BAC OSJNBa... 40 4.4 
>ref|XM_478119.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1755

 Score =  157 bits (79), Expect = 3e-35
 Identities = 160/187 (85%)
 Strand = Plus / Plus

                                                                       
Query: 144 cgggggacgccgtgggggagttccggcggaggatcagggtggctgaagtgaagggagggg 203
           ||||||| ||||||||||||||| || |  |||   ||||||| || || ||||||||||
Sbjct: 212 cgggggaggccgtgggggagttcaggagacggacgcgggtggcggatgtcaagggagggg 271

                                                                       
Query: 204 aggaccaaggcacttcctgggtcgggaaggagcttaccgtgcgcgggtgggtgcgcacct 263
           ||||| | ||| |  | ||||| || ||| ||||  ||||||||||||||||||||||||
Sbjct: 272 aggacgagggcgccgcgtgggttggaaagcagctcgccgtgcgcgggtgggtgcgcacct 331

                                                                       
Query: 264 gccgtgcccagaggaccgtcacattcgtggaggttaatgatggatcttgcttgtccaata 323
           |||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |
Sbjct: 332 gccgcgcccagaggaccgtcaccttcgtcgaggttaatgatggttcttgcttgtccaaca 391

                  
Query: 324 tgcaatg 330
           |||||||
Sbjct: 392 tgcaatg 398



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 92  tggcgccgctactgcgccgccgcgc 116
           |||||||||| ||||||||||||||
Sbjct: 133 tggcgccgcttctgcgccgccgcgc 157
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  107 bits (54), Expect = 2e-20
 Identities = 129/154 (83%)
 Strand = Plus / Plus

                                                                            
Query: 144      cgggggacgccgtgggggagttccggcggaggatcagggtggctgaagtgaagggagggg 203
                ||||||| ||||||||||||||| || |  |||   ||||||| || || ||||||||||
Sbjct: 17785257 cgggggaggccgtgggggagttcaggagacggacgcgggtggcggatgtcaagggagggg 17785316

                                                                            
Query: 204      aggaccaaggcacttcctgggtcgggaaggagcttaccgtgcgcgggtgggtgcgcacct 263
                ||||| | ||| |  | ||||| || ||| ||||  ||||||||||||||||||||||||
Sbjct: 17785317 aggacgagggcgccgcgtgggttggaaagcagctcgccgtgcgcgggtgggtgcgcacct 17785376

                                                  
Query: 264      gccgtgcccagaggaccgtcacattcgtggaggt 297
                |||| ||||||||||||||||| ||||| |||||
Sbjct: 17785377 gccgcgcccagaggaccgtcaccttcgtcgaggt 17785410



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                     
Query: 294      aggttaatgatggatcttgcttgtccaatatgcaatg 330
                ||||||||||||| |||||||||||||| ||||||||
Sbjct: 17786409 aggttaatgatggttcttgcttgtccaacatgcaatg 17786445



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 92       tggcgccgctactgcgccgccgcgc 116
                |||||||||| ||||||||||||||
Sbjct: 17785178 tggcgccgcttctgcgccgccgcgc 17785202
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>dbj|AP004348.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0683C09
          Length = 185139

 Score =  107 bits (54), Expect = 2e-20
 Identities = 129/154 (83%)
 Strand = Plus / Plus

                                                                         
Query: 144   cgggggacgccgtgggggagttccggcggaggatcagggtggctgaagtgaagggagggg 203
             ||||||| ||||||||||||||| || |  |||   ||||||| || || ||||||||||
Sbjct: 12249 cgggggaggccgtgggggagttcaggagacggacgcgggtggcggatgtcaagggagggg 12308

                                                                         
Query: 204   aggaccaaggcacttcctgggtcgggaaggagcttaccgtgcgcgggtgggtgcgcacct 263
             ||||| | ||| |  | ||||| || ||| ||||  ||||||||||||||||||||||||
Sbjct: 12309 aggacgagggcgccgcgtgggttggaaagcagctcgccgtgcgcgggtgggtgcgcacct 12368

                                               
Query: 264   gccgtgcccagaggaccgtcacattcgtggaggt 297
             |||| ||||||||||||||||| ||||| |||||
Sbjct: 12369 gccgcgcccagaggaccgtcaccttcgtcgaggt 12402



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                  
Query: 294   aggttaatgatggatcttgcttgtccaatatgcaatg 330
             ||||||||||||| |||||||||||||| ||||||||
Sbjct: 13401 aggttaatgatggttcttgcttgtccaacatgcaatg 13437



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 92    tggcgccgctactgcgccgccgcgc 116
             |||||||||| ||||||||||||||
Sbjct: 12170 tggcgccgcttctgcgccgccgcgc 12194
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>dbj|AP003849.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1753_E03
          Length = 126734

 Score =  107 bits (54), Expect = 2e-20
 Identities = 129/154 (83%)
 Strand = Plus / Plus

                                                                         
Query: 144   cgggggacgccgtgggggagttccggcggaggatcagggtggctgaagtgaagggagggg 203
             ||||||| ||||||||||||||| || |  |||   ||||||| || || ||||||||||
Sbjct: 90010 cgggggaggccgtgggggagttcaggagacggacgcgggtggcggatgtcaagggagggg 90069

                                                                         
Query: 204   aggaccaaggcacttcctgggtcgggaaggagcttaccgtgcgcgggtgggtgcgcacct 263
             ||||| | ||| |  | ||||| || ||| ||||  ||||||||||||||||||||||||
Sbjct: 90070 aggacgagggcgccgcgtgggttggaaagcagctcgccgtgcgcgggtgggtgcgcacct 90129

                                               
Query: 264   gccgtgcccagaggaccgtcacattcgtggaggt 297
             |||| ||||||||||||||||| ||||| |||||
Sbjct: 90130 gccgcgcccagaggaccgtcaccttcgtcgaggt 90163



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                  
Query: 294   aggttaatgatggatcttgcttgtccaatatgcaatg 330
             ||||||||||||| |||||||||||||| ||||||||
Sbjct: 91162 aggttaatgatggttcttgcttgtccaacatgcaatg 91198



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 92    tggcgccgctactgcgccgccgcgc 116
             |||||||||| ||||||||||||||
Sbjct: 89931 tggcgccgcttctgcgccgccgcgc 89955
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>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16
          Length = 347137

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 111    ccgcgccccccgtcgcggccacg 133
              |||||||||||||||||||||||
Sbjct: 245039 ccgcgccccccgtcgcggccacg 245061
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>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14
          Length = 349305

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 111    ccgcgccccccgtcgcggccacg 133
              |||||||||||||||||||||||
Sbjct: 182752 ccgcgccccccgtcgcggccacg 182774
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>emb|BX640413.1| Bordetella pertussis strain Tohama I, complete genome; segment 3/12
          Length = 349028

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 111    ccgcgccccccgtcgcggccacg 133
              |||||||||||||||||||||||
Sbjct: 171763 ccgcgccccccgtcgcggccacg 171741
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 106     cgccgccgcgccccccgtcgcg 127
               ||||||||||||||||||||||
Sbjct: 1020887 cgccgccgcgccccccgtcgcg 1020908
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 106     cgccgccgcgccccccgtcgcg 127
               ||||||||||||||||||||||
Sbjct: 2338413 cgccgccgcgccccccgtcgcg 2338434
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 111     ccgcgccccccgtcgcggccacggcg 136
               |||||||||||| |||||||||||||
Sbjct: 4327245 ccgcgccccccgccgcggccacggcg 4327220
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>ref|XM_507328.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1125_C01.28
           mRNA
          Length = 2304

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 106 cgccgccgcgccccccgtcgcggcc 130
           ||||||||||||||||| |||||||
Sbjct: 129 cgccgccgcgccccccgccgcggcc 153
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>ref|XM_483721.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2211

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 106 cgccgccgcgccccccgtcgcggcc 130
           ||||||||||||||||| |||||||
Sbjct: 132 cgccgccgcgccccccgccgcggcc 156
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 106      cgccgccgcgccccccgtcgcggcc 130
                ||||||||||||||||| |||||||
Sbjct: 27783119 cgccgccgcgccccccgccgcggcc 27783143



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 106      cgccgccgcgccccccgtcgcggcc 130
                ||||||||||||||||| |||||||
Sbjct: 27754825 cgccgccgcgccccccgccgcggcc 27754849
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 130      cacggcgatgccgacggggga 150
                |||||||||||||||||||||
Sbjct: 27758880 cacggcgatgccgacggggga 27758860



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 106      cgccgccgcgccccccgtcg 125
                ||||||||||||||||||||
Sbjct: 35261233 cgccgccgcgccccccgtcg 35261214
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>gb|AC040169.7| Homo sapiens chromosome 16 clone RP11-505K9, complete sequence
          Length = 212596

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 187   tgaagtgaagggaggggagga 207
             |||||||||||||||||||||
Sbjct: 71198 tgaagtgaagggaggggagga 71178
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>dbj|AP004044.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1125_C01
          Length = 123849

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 106    cgccgccgcgccccccgtcgcggcc 130
              ||||||||||||||||| |||||||
Sbjct: 116041 cgccgccgcgccccccgccgcggcc 116065



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 106   cgccgccgcgccccccgtcgcggcc 130
             ||||||||||||||||| |||||||
Sbjct: 87747 cgccgccgcgccccccgccgcggcc 87771
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>dbj|AP005480.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0439B07
          Length = 89475

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 106   cgccgccgcgccccccgtcgcggcc 130
             ||||||||||||||||| |||||||
Sbjct: 37576 cgccgccgcgccccccgccgcggcc 37600



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 106  cgccgccgcgccccccgtcgcggcc 130
            ||||||||||||||||| |||||||
Sbjct: 9282 cgccgccgcgccccccgccgcggcc 9306
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>dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0663F07
          Length = 159046

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 130   cacggcgatgccgacggggga 150
             |||||||||||||||||||||
Sbjct: 44213 cacggcgatgccgacggggga 44193
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>dbj|AK099230.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094O15, full
           insert sequence
          Length = 2211

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 106 cgccgccgcgccccccgtcgcggcc 130
           ||||||||||||||||| |||||||
Sbjct: 132 cgccgccgcgccccccgccgcggcc 156
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>dbj|AK072840.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023141D24, full
           insert sequence
          Length = 2306

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 106 cgccgccgcgccccccgtcgcggcc 130
           ||||||||||||||||| |||||||
Sbjct: 129 cgccgccgcgccccccgccgcggcc 153
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>ref|XM_468440.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 801

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 106 cgccgccgcgccccccgtcg 125
           ||||||||||||||||||||
Sbjct: 99  cgccgccgcgccccccgtcg 80
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>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29
          Length = 309050

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 126    cggccacggcgatgccgacg 145
              ||||||||||||||||||||
Sbjct: 244551 cggccacggcgatgccgacg 244570
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>gb|AC154839.3| Mus musculus BAC clone RP23-61L24 from chromosome 13, complete sequence
          Length = 209819

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 193    gaagggaggggaggaccaag 212
              ||||||||||||||||||||
Sbjct: 152282 gaagggaggggaggaccaag 152263
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>gb|AC155301.2| Mus musculus BAC clone RP24-216J21 from chromosome 13, complete
             sequence
          Length = 192299

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   gaagggaggggaggaccaag 212
             ||||||||||||||||||||
Sbjct: 60599 gaagggaggggaggaccaag 60580
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 102     actgcgccgccgcgccccccgtcgcggc 129
               ||||||||||||||  ||||||||||||
Sbjct: 8485837 actgcgccgccgcggtccccgtcgcggc 8485810
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>dbj|AP004020.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1119_A01
          Length = 108727

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   cgccgccgcgccccccgtcg 125
             ||||||||||||||||||||
Sbjct: 11567 cgccgccgcgccccccgtcg 11548
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>dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0474F11
          Length = 139544

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   cgccgccgcgccccccgtcg 125
             ||||||||||||||||||||
Sbjct: 73283 cgccgccgcgccccccgtcg 73264
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>gb|AC119189.8| Mus musculus chromosome 1, clone RP24-178E16, complete sequence
          Length = 182530

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 17     ctccggctggcaccacactg 36
              ||||||||||||||||||||
Sbjct: 105238 ctccggctggcaccacactg 105219
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>dbj|AK110424.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-166-A10, full
            insert sequence
          Length = 2654

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 124  cgcggccacggcgatgccga 143
            ||||||||||||||||||||
Sbjct: 1449 cgcggccacggcgatgccga 1430
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>dbj|AK069277.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023018N13, full
           insert sequence
          Length = 1141

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 102 actgcgccgccgcgccccccgtcgcggc 129
           ||||||||||||||  ||||||||||||
Sbjct: 269 actgcgccgccgcggtccccgtcgcggc 296
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 102     actgcgccgccgcgccccccgtcgcggc 129
               ||||||||||||||  ||||||||||||
Sbjct: 8485720 actgcgccgccgcggtccccgtcgcggc 8485693
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>emb|CT010471.11| Mouse DNA sequence from clone RP23-20A5 on chromosome 13, complete
             sequence
          Length = 219145

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   gaagggaggggaggaccaag 212
             ||||||||||||||||||||
Sbjct: 27310 gaagggaggggaggaccaag 27291
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>emb|AL928775.2|CNS08CC5 Oryza sativa chromosome 12, . BAC OSJNBa0030N06 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 146444

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 102   actgcgccgccgcgccccccgtcgcggc 129
             ||||||||||||||  ||||||||||||
Sbjct: 92500 actgcgccgccgcggtccccgtcgcggc 92473


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,334,239
Number of Sequences: 3902068
Number of extensions: 2334239
Number of successful extensions: 50280
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49841
Number of HSP's gapped (non-prelim): 431
length of query: 330
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 308
effective length of database: 17,147,199,772
effective search space: 5281337529776
effective search space used: 5281337529776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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