ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal21n20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATL2F_ARATH (O64762) Putative RING-H2 finger protein ATL2F 32 0.79
2ATL4C_ARATH (Q9M0R5) Putative RING-H2 finger protein ATL4C precu... 31 1.8
3ATL2G_ARATH (O64763) RING-H2 finger protein ATL2G precursor (RIN... 31 2.3
4ATL4B_ARATH (Q9M0R6) Putative RING-H2 finger protein ATL4B precu... 30 5.1
5EME1_SCHPO (Q9C103) Crossover junction endonuclease eme1 (EC 3.1... 30 5.1
6Y4DW_RHISN (P55422) Hypothetical 22.9 kDa protein y4dW 29 6.7
7YD73_SCHPO (Q10328) Putative homeobox protein C32A11.03c in chro... 29 8.7
8CTTB2_CALJA (Q2QLF8) Cortactin-binding protein 2 (CortBP2) 29 8.7

>ATL2F_ARATH (O64762) Putative RING-H2 finger protein ATL2F|
          Length = 302

 Score = 32.3 bits (72), Expect = 0.79
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 10/55 (18%)
 Frame = +1

Query: 49  DLERFTLRLPEHVRREM-------VAAGEQSAHRRAQR---AGRWPSFLRYTRTL 183
           +L+RFTLRLPE VRR++       VA  +  + RR  R   AG   S   Y R +
Sbjct: 211 NLDRFTLRLPEEVRRQLTKKTVDNVAFSQARSSRRGYRSRSAGSERSVFSYQRRM 265



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>ATL4C_ARATH (Q9M0R5) Putative RING-H2 finger protein ATL4C precursor|
          Length = 345

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 13/25 (52%), Positives = 21/25 (84%)
 Frame = +1

Query: 31  VVRLDRDLERFTLRLPEHVRREMVA 105
           V +L  +L+RFTL+LPE V+R++V+
Sbjct: 233 VQQLGENLDRFTLQLPEEVQRQLVS 257



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>ATL2G_ARATH (O64763) RING-H2 finger protein ATL2G precursor (RING-H2 finger|
           protein ATL9)
          Length = 378

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 49  DLERFTLRLPEHVRREMVAAGEQSAH 126
           +L+RFTLRLP+ VRR+++       H
Sbjct: 268 NLDRFTLRLPDDVRRQLMKTSRTMGH 293



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>ATL4B_ARATH (Q9M0R6) Putative RING-H2 finger protein ATL4B precursor|
          Length = 302

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 11/25 (44%), Positives = 22/25 (88%)
 Frame = +1

Query: 31  VVRLDRDLERFTLRLPEHVRREMVA 105
           +++L  +L+RFTL+LPE ++R++V+
Sbjct: 195 LLQLGTNLDRFTLQLPEEMQRQLVS 219



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>EME1_SCHPO (Q9C103) Crossover junction endonuclease eme1 (EC 3.1.22.-)|
           (Essential meiotic endonuclease 1)
          Length = 738

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -1

Query: 314 DTPPRSTKCTAATR-FPLILVDDEEDTSPPSELSVLLGVEKNLPDSVLVYL 165
           DTP RST+C +  + F   LV   ED  P    ++ +  +K++ D++L+ L
Sbjct: 47  DTPQRSTQCDSLLKSFSTPLVSGSEDVLPSPRDALNITNKKSVTDNLLLSL 97



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>Y4DW_RHISN (P55422) Hypothetical 22.9 kDa protein y4dW|
          Length = 204

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 207 RRRKEPSRQRPGVPQERWPSAGSLCAAMRALLP 109
           ++RK   R RP +P+E+WP+     +A  A +P
Sbjct: 154 QKRKRGYRPRPSLPKEKWPAEAEHESATSAPVP 186



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>YD73_SCHPO (Q10328) Putative homeobox protein C32A11.03c in chromosome I|
          Length = 942

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = -1

Query: 305 PRSTKCT-AATRFPLILVDDEEDTSPPSELSVLLGVEKNLPD-SVLVYLRNDGHLPALCA 132
           P+S K    A +   +L +  +DT+PP  +   +G E N+P+ SV ++ +N      L +
Sbjct: 166 PKSKKQRLTADQLAYLLREFSKDTNPPPAIREKIGRELNIPERSVTIWFQNRRAKSKLIS 225

Query: 131 RR 126
           RR
Sbjct: 226 RR 227



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>CTTB2_CALJA (Q2QLF8) Cortactin-binding protein 2 (CortBP2)|
          Length = 1662

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
 Frame = +2

Query: 239  CPLHR------RRGLEGSAWPPCISSNAAACPVPK--SALWRSMWTRTRQLAGRF 379
            CPL R      R   +G ++P  I S+  +C   K  S  WR + T  R+ +GRF
Sbjct: 1414 CPLPRAELEQHRADFKGGSFPLSIVSSYNSCSKKKGESGAWRKVNTSPRRKSGRF 1468


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,039,871
Number of Sequences: 219361
Number of extensions: 1262784
Number of successful extensions: 4675
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4672
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3869946934
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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