ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal21n19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197850.1| Oryza sativa (japonica cultivar-group) unknown ... 121 7e-25
2dbj|AK069018.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 7e-25
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 70 2e-09
4gb|AC060755.9|AC060755 Oryza sativa chromosome 10 BAC OSJNBa0003... 70 2e-09
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 70 2e-09
6ref|NM_001036432.1| Arabidopsis thaliana unknown protein AT2G387... 64 1e-07
7ref|NM_129428.3| Arabidopsis thaliana unknown protein AT2G38710 ... 64 1e-07
8emb|AJ271959.1|TCA271959 Theobroma cacao microsatellite DNA, clo... 64 1e-07
9gb|BT000577.1| Arabidopsis thaliana unknown protein (At2g38710/... 64 1e-07
10gb|AY127005.1| Arabidopsis thaliana At2g38710/T6A23.9 mRNA, comp... 64 1e-07
11emb|BX821552.1|CNS0A94O Arabidopsis thaliana Full-length cDNA Co... 64 1e-07
12emb|BX821334.1|CNS0A98K Arabidopsis thaliana Full-length cDNA Co... 64 1e-07
13gb|AY085766.1| Arabidopsis thaliana clone 17861 mRNA, complete s... 64 1e-07
14gb|BT013871.1| Lycopersicon esculentum clone 132851R, mRNA sequence 58 8e-06
15gb|AC125406.4| Mus musculus BAC clone RP23-32C18 from chromosome... 42 0.48
16gb|AC165168.3| Mus musculus BAC clone RP23-12D3 from chromosome ... 42 0.48
17gb|AC027341.3|AC027341 Homo sapiens chromosome 5 clone CTD-2261B... 42 0.48
18emb|AL627244.1|HS160J21 Homo sapiens chromosome X sequence from ... 42 0.48
19emb|AJ239329.2|HSXKSRPX Homo sapiens chromosome X sequence from ... 42 0.48
20gb|AC116759.13| Mus musculus chromosome 18, clone RP23-383E12, c... 38 7.5
21gb|AC115789.9| Mus musculus chromosome 18, clone RP23-398N2, com... 38 7.5
22gb|AC100752.10| Mus musculus chromosome 3, clone RP23-2A4, compl... 38 7.5
23emb|AL596252.11| Mouse DNA sequence from clone RP23-123O10 on ch... 38 7.5
24dbj|AB225919.1| Aspergillus oryzae cDNA, contig sequence: AoEST2774 38 7.5
25dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 38 7.5
26gb|AC007642.5|AC007642 Homo sapiens chromosome 17, clone hRPK.42... 38 7.5
27emb|AL358293.4|CNS05TE0 Human chromosome 14 DNA sequence BAC R-3... 38 7.5
28emb|AL160233.3|CNS01RGX Human chromosome 14 DNA sequence BAC C-2... 38 7.5 
>ref|NM_197850.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBa0003O19.6), mRNA
          Length = 746

 Score =  121 bits (61), Expect = 7e-25
 Identities = 133/157 (84%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagagctgccgtatttggaatgcacggtttctatattgactgaatacgaaactgcactca 60
           |||| |||||||||||||| || || || |||||| |||| ||||| ||||||||||| |
Sbjct: 355 aagaactgccgtatttggagtgtacagtatctatactgaccgaatatgaaactgcactta 414

                                                                       
Query: 61  actaccttgattgggaggttggaaagcatggtttaattattgagttcaccgatcctgact 120
           || ||||||| |||||||| || |||||||| ||||||||||| ||||| ||||| ||||
Sbjct: 415 accaccttgactgggaggtgggtaagcatgggttaattattgaattcactgatccagact 474

                                                
Query: 121 ataatgtaagacggagtggaacatatttacctgaggt 157
           ||||  | || || |||| ||| ||||||||||||||
Sbjct: 475 ataacatgaggcgcagtgcaacttatttacctgaggt 511
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>dbj|AK069018.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001I03, full
           insert sequence
          Length = 1014

 Score =  121 bits (61), Expect = 7e-25
 Identities = 133/157 (84%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagagctgccgtatttggaatgcacggtttctatattgactgaatacgaaactgcactca 60
           |||| |||||||||||||| || || || |||||| |||| ||||| ||||||||||| |
Sbjct: 357 aagaactgccgtatttggagtgtacagtatctatactgaccgaatatgaaactgcactta 416

                                                                       
Query: 61  actaccttgattgggaggttggaaagcatggtttaattattgagttcaccgatcctgact 120
           || ||||||| |||||||| || |||||||| ||||||||||| ||||| ||||| ||||
Sbjct: 417 accaccttgactgggaggtgggtaagcatgggttaattattgaattcactgatccagact 476

                                                
Query: 121 ataatgtaagacggagtggaacatatttacctgaggt 157
           ||||  | || || |||| ||| ||||||||||||||
Sbjct: 477 ataacatgaggcgcagtgcaacttatttacctgaggt 513
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 68/79 (86%)
 Strand = Plus / Plus

                                                                            
Query: 1        aagagctgccgtatttggaatgcacggtttctatattgactgaatacgaaactgcactca 60
                |||| |||||||||||||| || || || |||||| |||| ||||| ||||||||||| |
Sbjct: 22235439 aagaactgccgtatttggagtgtacagtatctatactgaccgaatatgaaactgcactta 22235498

                                   
Query: 61       actaccttgattgggaggt 79
                || ||||||| ||||||||
Sbjct: 22235499 accaccttgactgggaggt 22235517



 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                            
Query: 84       aagcatggtttaattattgagttcaccgatcctgactataatgtaagacggagtggaaca 143
                |||||||| ||||||||||| ||||| ||||| ||||||||  | || || |||| ||| 
Sbjct: 22235588 aagcatgggttaattattgaattcactgatccagactataacatgaggcgcagtgcaact 22235647

                              
Query: 144      tatttacctgaggt 157
                ||||||||||||||
Sbjct: 22235648 tatttacctgaggt 22235661
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>gb|AC060755.9|AC060755 Oryza sativa chromosome 10 BAC OSJNBa0003O19 genomic sequence, complete
             sequence
          Length = 172427

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 68/79 (86%)
 Strand = Plus / Plus

                                                                         
Query: 1     aagagctgccgtatttggaatgcacggtttctatattgactgaatacgaaactgcactca 60
             |||| |||||||||||||| || || || |||||| |||| ||||| ||||||||||| |
Sbjct: 52682 aagaactgccgtatttggagtgtacagtatctatactgaccgaatatgaaactgcactta 52741

                                
Query: 61    actaccttgattgggaggt 79
             || ||||||| ||||||||
Sbjct: 52742 accaccttgactgggaggt 52760



 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                         
Query: 84    aagcatggtttaattattgagttcaccgatcctgactataatgtaagacggagtggaaca 143
             |||||||| ||||||||||| ||||| ||||| ||||||||  | || || |||| ||| 
Sbjct: 52831 aagcatgggttaattattgaattcactgatccagactataacatgaggcgcagtgcaact 52890

                           
Query: 144   tatttacctgaggt 157
             ||||||||||||||
Sbjct: 52891 tatttacctgaggt 52904
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 68/79 (86%)
 Strand = Plus / Plus

                                                                            
Query: 1        aagagctgccgtatttggaatgcacggtttctatattgactgaatacgaaactgcactca 60
                |||| |||||||||||||| || || || |||||| |||| ||||| ||||||||||| |
Sbjct: 22247507 aagaactgccgtatttggagtgtacagtatctatactgaccgaatatgaaactgcactta 22247566

                                   
Query: 61       actaccttgattgggaggt 79
                || ||||||| ||||||||
Sbjct: 22247567 accaccttgactgggaggt 22247585



 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                            
Query: 84       aagcatggtttaattattgagttcaccgatcctgactataatgtaagacggagtggaaca 143
                |||||||| ||||||||||| ||||| ||||| ||||||||  | || || |||| ||| 
Sbjct: 22247656 aagcatgggttaattattgaattcactgatccagactataacatgaggcgcagtgcaact 22247715

                              
Query: 144      tatttacctgaggt 157
                ||||||||||||||
Sbjct: 22247716 tatttacctgaggt 22247729
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>ref|NM_001036432.1| Arabidopsis thaliana unknown protein AT2G38710 transcript variant
           AT2G38710.2 mRNA, complete cds
          Length = 1164

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                       
Query: 63  taccttgattgggaggttggaaagcatggtttaattattgagtt 106
           |||||||||||||||||||| ||||||||| |||| ||||||||
Sbjct: 696 taccttgattgggaggttggtaagcatggtataatcattgagtt 739
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>ref|NM_129428.3| Arabidopsis thaliana unknown protein AT2G38710 transcript variant
           AT2G38710.1 mRNA, complete cds
          Length = 907

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                       
Query: 63  taccttgattgggaggttggaaagcatggtttaattattgagtt 106
           |||||||||||||||||||| ||||||||| |||| ||||||||
Sbjct: 439 taccttgattgggaggttggtaagcatggtataatcattgagtt 482
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>emb|AJ271959.1|TCA271959 Theobroma cacao microsatellite DNA, clone mTcCIR61
          Length = 456

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 70/82 (85%), Gaps = 3/82 (3%)
 Strand = Plus / Minus

                                                                       
Query: 76  aggttggaaagcatggtttaattattgagttcaccgatcctgactataatgtaagacgga 135
           ||||||||||||| ||| ||||||||||||| || ||   |||||||||| |||| || |
Sbjct: 314 aggttggaaagcaaggtataattattgagtttactga---tgactataatataaggcgaa 258

                                 
Query: 136 gtggaacatatttacctgaggt 157
           |||  |||||||||||||||||
Sbjct: 257 gtgccacatatttacctgaggt 236
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>gb|BT000577.1| Arabidopsis thaliana unknown protein  (At2g38710/T6A23.9) mRNA,
           complete cds
          Length = 645

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                       
Query: 63  taccttgattgggaggttggaaagcatggtttaattattgagtt 106
           |||||||||||||||||||| ||||||||| |||| ||||||||
Sbjct: 325 taccttgattgggaggttggtaagcatggtataatcattgagtt 368
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>gb|AY127005.1| Arabidopsis thaliana At2g38710/T6A23.9 mRNA, complete cds
          Length = 877

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                       
Query: 63  taccttgattgggaggttggaaagcatggtttaattattgagtt 106
           |||||||||||||||||||| ||||||||| |||| ||||||||
Sbjct: 413 taccttgattgggaggttggtaagcatggtataatcattgagtt 456
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>emb|BX821552.1|CNS0A94O Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL52ZF04 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 882

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                       
Query: 63  taccttgattgggaggttggaaagcatggtttaattattgagtt 106
           |||||||||||||||||||| ||||||||| |||| ||||||||
Sbjct: 417 taccttgattgggaggttggtaagcatggtataatcattgagtt 460
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>emb|BX821334.1|CNS0A98K Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL34ZE10 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 856

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                       
Query: 63  taccttgattgggaggttggaaagcatggtttaattattgagtt 106
           |||||||||||||||||||| ||||||||| |||| ||||||||
Sbjct: 388 taccttgattgggaggttggtaagcatggtataatcattgagtt 431
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>gb|AY085766.1| Arabidopsis thaliana clone 17861 mRNA, complete sequence
          Length = 904

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                       
Query: 63  taccttgattgggaggttggaaagcatggtttaattattgagtt 106
           |||||||||||||||||||| ||||||||| |||| ||||||||
Sbjct: 439 taccttgattgggaggttggtaagcatggtataatcattgagtt 482
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>gb|BT013871.1| Lycopersicon esculentum clone 132851R, mRNA sequence
          Length = 1227

 Score = 58.0 bits (29), Expect = 8e-06
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                       
Query: 60  aactaccttgattgggaggttggaaagcatggtttaattattgagttcaccgatcctgac 119
           |||||||||||||||||||| || ||||||||  |||||||||| || || || ||| ||
Sbjct: 606 aactaccttgattgggaggtagggaagcatgggataattattgaatttactgaccctaac 665

                
Query: 120 tataa 124
           |||||
Sbjct: 666 tataa 670
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>gb|AC125406.4| Mus musculus BAC clone RP23-32C18 from chromosome 19, complete sequence
          Length = 208557

 Score = 42.1 bits (21), Expect = 0.48
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 107   caccgatcctgactataatgt 127
             |||||||||||||||||||||
Sbjct: 27767 caccgatcctgactataatgt 27787
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>gb|AC165168.3| Mus musculus BAC clone RP23-12D3 from chromosome 19, complete sequence
          Length = 215151

 Score = 42.1 bits (21), Expect = 0.48
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 107    caccgatcctgactataatgt 127
              |||||||||||||||||||||
Sbjct: 156382 caccgatcctgactataatgt 156402
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>gb|AC027341.3|AC027341 Homo sapiens chromosome 5 clone CTD-2261B13, complete sequence
          Length = 106920

 Score = 42.1 bits (21), Expect = 0.48
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 75    gaggttggaaagcatggttta 95
             |||||||||||||||||||||
Sbjct: 67192 gaggttggaaagcatggttta 67172
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>emb|AL627244.1|HS160J21 Homo sapiens chromosome X sequence from BAC CEPHB160J21 , map Xp21.1
            region DXS709-SRPX, complete sequence
          Length = 150966

 Score = 42.1 bits (21), Expect = 0.48
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 71   ttgggaggttggaaagcatgg 91
            |||||||||||||||||||||
Sbjct: 2513 ttgggaggttggaaagcatgg 2533
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>emb|AJ239329.2|HSXKSRPX Homo sapiens chromosome X sequence from 4 cosmids, map Xp21.1 region
             DXS709-SRPX, complete sequence
          Length = 106604

 Score = 42.1 bits (21), Expect = 0.48
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 71    ttgggaggttggaaagcatgg 91
             |||||||||||||||||||||
Sbjct: 37344 ttgggaggttggaaagcatgg 37364
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>gb|AC116759.13| Mus musculus chromosome 18, clone RP23-383E12, complete sequence
          Length = 203049

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 79     ttggaaagcatggtttaat 97
              |||||||||||||||||||
Sbjct: 172460 ttggaaagcatggtttaat 172478
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>gb|AC115789.9| Mus musculus chromosome 18, clone RP23-398N2, complete sequence
          Length = 206108

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 79    ttggaaagcatggtttaat 97
             |||||||||||||||||||
Sbjct: 37476 ttggaaagcatggtttaat 37494
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>gb|AC100752.10| Mus musculus chromosome 3, clone RP23-2A4, complete sequence
          Length = 208757

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 80     tggaaagcatggtttaatt 98
              |||||||||||||||||||
Sbjct: 116504 tggaaagcatggtttaatt 116486
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>emb|AL596252.11| Mouse DNA sequence from clone RP23-123O10 on chromosome 11 Contains the
              3' end of the Acac gene for acetyl-Coenzyme A carboxylase,
              complete sequence
          Length = 187803

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 139    gaacatatttacctgaggt 157
              |||||||||||||||||||
Sbjct: 152856 gaacatatttacctgaggt 152874
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>dbj|AB225919.1| Aspergillus oryzae cDNA, contig sequence: AoEST2774
          Length = 1417

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 98  tattgagttcaccgatcct 116
           |||||||||||||||||||
Sbjct: 731 tattgagttcaccgatcct 749
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>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 98    tattgagttcaccgatcct 116
             |||||||||||||||||||
Sbjct: 44786 tattgagttcaccgatcct 44804
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>gb|AC007642.5|AC007642 Homo sapiens chromosome 17, clone hRPK.420_O_5, complete sequence
          Length = 64011

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 92    tttaattattgagttcacc 110
             |||||||||||||||||||
Sbjct: 41776 tttaattattgagttcacc 41794
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>emb|AL358293.4|CNS05TE0 Human chromosome 14 DNA sequence BAC R-398E10 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 197927

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 26     ggtttctatattgactgaa 44
              |||||||||||||||||||
Sbjct: 185406 ggtttctatattgactgaa 185424
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>emb|AL160233.3|CNS01RGX Human chromosome 14 DNA sequence BAC C-2373J19 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 139887

 Score = 38.2 bits (19), Expect = 7.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    ggtttctatattgactgaa 44
             |||||||||||||||||||
Sbjct: 90806 ggtttctatattgactgaa 90788


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,067,014
Number of Sequences: 3902068
Number of extensions: 1067014
Number of successful extensions: 64161
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64088
Number of HSP's gapped (non-prelim): 72
length of query: 157
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 135
effective length of database: 17,147,199,772
effective search space: 2314871969220
effective search space used: 2314871969220
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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