>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score = 52.4 bits (124), Expect(2) = 2e-13
 Identities = 25/25 (100%), Positives = 25/25 (100%)
 Frame = +1

Query: 151 KQVTSAVNYHGKSSKANRFTVMAAE 225
           KQVTSAVNYHGKSSKANRFTVMAAE
Sbjct: 26  KQVTSAVNYHGKSSKANRFTVMAAE 50



 Score = 40.8 bits (94), Expect(2) = 2e-13
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +3

Query: 75  MAAAFSSTVGAPASTPTNF 131
           MAAAFSSTVGAPASTPTNF
Sbjct: 1   MAAAFSSTVGAPASTPTNF 19

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score = 44.3 bits (103), Expect(2) = 5e-11
 Identities = 21/25 (84%), Positives = 21/25 (84%)
 Frame = +1

Query: 151 KQVTSAVNYHGKSSKANRFTVMAAE 225
           KQVTSAVNYHGKSS  NRF VMA E
Sbjct: 26  KQVTSAVNYHGKSSNINRFKVMAKE 50



 Score = 40.8 bits (94), Expect(2) = 5e-11
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +3

Query: 75  MAAAFSSTVGAPASTPTNF 131
           MAAAFSSTVGAPASTPTNF
Sbjct: 1   MAAAFSSTVGAPASTPTNF 19

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score = 36.2 bits (82), Expect(2) = 3e-06
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +3

Query: 75  MAAAFSSTVGAPASTPT 125
           MAAAFSSTVGAPASTPT
Sbjct: 1   MAAAFSSTVGAPASTPT 17



 Score = 32.3 bits (72), Expect(2) = 3e-06
 Identities = 16/25 (64%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
 Frame = +1

Query: 154 QVTSAVNYHGKSSKAN-RFTVMAAE 225
           QV++AV YHGKSS +N RF  MAA+
Sbjct: 30  QVSAAVTYHGKSSSSNSRFKAMAAK 54

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score = 36.2 bits (82), Expect = 0.024
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +3

Query: 75  MAAAFSSTVGAPASTPTNF 131
           MA+AFSSTVGAPASTPT F
Sbjct: 1   MASAFSSTVGAPASTPTIF 19

>TRIPC_HUMAN (Q14669) Thyroid receptor-interacting protein 12 (TRIP12)|
          Length = 1992

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +2

Query: 32  AHPPLLARSTKQHRDGCCLLLHRRGSG 112
           A  P L RST+Q   G C    RRGSG
Sbjct: 315 AELPSLRRSTRQKTTGSCASTSRRGSG 341

>SYC_CLOAB (Q97ED6) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA|
           ligase) (CysRS)
          Length = 464

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
 Frame = -1

Query: 193 WSSCHGSSRPRSPAYLSFFPRKLVG----VEAGA-----PTVEEKAAAISVLLGRPC*QR 41
           W S  G  RP      S   R L+G    + AGA     P  E + A      G+P  + 
Sbjct: 192 WESPWGKGRPGWHIECSCMARDLLGDTIDIHAGAIDLIFPHHENEIAQSEARTGKPFSKY 251

Query: 40  WMRAAVLVIS 11
           WM AA L I+
Sbjct: 252 WMHAAYLNIN 261

>PGCA_CANFA (Q28343) Aggrecan core protein precursor (Cartilage-specific|
            proteoglycan core protein) (CSPCP)
          Length = 2333

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 9/46 (19%)
 Frame = -1

Query: 199  WPWSSCHGSSRPRSPAYLSFFPRKLVGVEA---------GAPTVEE 89
            +P S    SS P S +  S FP + VGV A         GAP V E
Sbjct: 1886 FPGSGLEASSVPESSSETSDFPERAVGVSAAPEASGGASGAPDVSE 1931

>RSMB_PSEPK (Q88RR3) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 436

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 26  SRAHPPLLARSTKQH--RDGCCLLLHRRGSGFYADQLPRE 139
           + AHPP++ R  ++H  RD    LL   G G  A Q  R+
Sbjct: 165 NNAHPPMILRVNRRHHSRDAYLALLAEAGIGASACQYSRD 204


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,967,257
Number of Sequences: 219361
Number of extensions: 482032
Number of successful extensions: 1265
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1265
length of database: 80,573,946
effective HSP length: 50
effective length of database: 69,605,896
effective search space used: 1670541504
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)