Clone Name	baal22a20
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR...	379	e-102
2	gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA	347	9e-93
3	gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for...	216	2e-53
4	gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form...	210	1e-51
5	gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5...	210	1e-51
6	gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb...	159	5e-36
7	dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ...	159	5e-36
8	dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon...	159	5e-36
9	dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon...	159	5e-36
10	dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon...	159	5e-36
11	dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon...	159	5e-36
12	dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l...	159	5e-36
13	dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s...	151	1e-33
14	gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome...	105	6e-20
15	gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome...	105	6e-20
16	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	105	6e-20
17	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	105	6e-20
18	gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox...	82	8e-13
19	gb|AY110044.1| Zea mays CL1146_1 mRNA sequence	82	8e-13
20	gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c...	68	1e-08
21	gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR...	68	1e-08
22	emb|CR701838.2|CNS0G4HM Tetraodon nigroviridis full-length cDNA	42	0.73
23	emb|CR686472.2|CNS0FSMS Tetraodon nigroviridis full-length cDNA	42	0.73
24	emb|CR681817.2|CNS0FP1H Tetraodon nigroviridis full-length cDNA	42	0.73
25	emb|CR680161.1|CNS0FNRH Tetraodon nigroviridis full-length cDNA	42	0.73
26	emb|CR675309.2|CNS0FK1F Tetraodon nigroviridis full-length cDNA	42	0.73
27	gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 ...	40	2.9
28	ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrot...	40	2.9
29	ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphop...	40	2.9
30	gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co...	40	2.9
31	gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphopro...	40	2.9
32	ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain h...	40	2.9
33	gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite...	40	2.9
34	gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite...	40	2.9
35	gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphopro...	40	2.9
36	emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on ch...	40	2.9
37	gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and co...	40	2.9
38	emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta ...	40	2.9
39	dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE60023...	40	2.9
40	gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-4...	40	2.9
41	gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, com...	40	2.9
42	gb|AC154546.2| Mus musculus BAC clone RP23-431I7 from chromosome...	40	2.9
43	gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209....	40	2.9
44	gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Canc...	40	2.9
45	dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds	40	2.9
46	dbj|AP003156.1| Mus musculus genomic DNA, chromosome 16q clone:R...	40	2.9
47	gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete ge...	40	2.9
48	gb|AC152058.8| Mus musculus BAC clone RP24-327D15 from chromosom...	40	2.9
49	emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein...	40	2.9

---

>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  379 bits (191), Expect = e-102
 Identities = 210/214 (98%), Gaps = 2/214 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  tgatcaccagcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacag 72
           ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 81  tgatcgccagcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacag 139

                                                                       
Query: 73  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 132
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 199

                                                                       
Query: 133 tcgggaagaagctcaagtaagcaggtgacctcggccgtgaactaccatggcaagagctcc 192
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tcgggaagaagctcaag-aagcaggtgacctcggccgtgaactaccatggcaagagctcc 258

                                             
Query: 193 aaggccaacaggttcacngtcatggcagcggaga 226
           ||||||||||||||||| ||||||||||||||||
Sbjct: 259 aaggccaacaggttcacagtcatggcagcggaga 292

---

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  347 bits (175), Expect = 9e-93
 Identities = 205/213 (96%), Gaps = 3/213 (1%)
 Strand = Plus / Plus

                                                                       
Query: 12  ctgatcaccagcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcaca 71
           ||||||||||||||||||||||  |||||||| ||||||||||||||| |||||||||||
Sbjct: 1   ctgatcaccagcacagccgcgc--atccaccgctgctagcaaggtcgagcaagcagcaca 58

                                                                       
Query: 72  gagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttc 131
           |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 59  gagatggctgctgccttctcctccaccgtcggtgccccggcttctacgccgaccaacttc 118

                                                                       
Query: 132 ctcgggaagaagctcaagtaagcaggtgacctcggccgtgaactaccatggcaagagctc 191
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 ctcgggaagaagctcaag-aagcaggtgacctcggccgtgaactaccatggcaagagctc 177

                                            
Query: 192 caaggccaacaggttcacngtcatggcagcgga 224
           |||||||||||||||||| ||||||||||||||
Sbjct: 178 caaggccaacaggttcacggtcatggcagcgga 210

---

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  216 bits (109), Expect = 2e-53
 Identities = 139/148 (93%), Gaps = 1/148 (0%)
 Strand = Plus / Plus

                                                                       
Query: 71  agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 130
           ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||
Sbjct: 76  agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccgaccagctt 135

                                                                       
Query: 131 cctcgggaagaagctcaagtaagcaggtgacctcggccgtgaactaccatggcaagagct 190
           |||||| || ||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 136 cctcggcaacaagctcaag-aagcaggtgacctcggcagtgaactaccatggcaagagct 194

                                       
Query: 191 ccaaggccaacaggttcacngtcatggc 218
            |||||||||||||||||| ||||||||
Sbjct: 195 tcaaggccaacaggttcaccgtcatggc 222

---

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  210 bits (106), Expect = 1e-51
 Identities = 138/148 (93%), Gaps = 1/148 (0%)
 Strand = Plus / Plus

                                                                       
Query: 71  agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 130
           ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| |||
Sbjct: 66  agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccnaccagctt 125

                                                                       
Query: 131 cctcgggaagaagctcaagtaagcaggtgacctcggccgtgaactaccatggcaagagct 190
           |||||| || ||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 126 cctcggcaacaagctcaag-aagcaggtgacctcggcagtgaactaccatggcaagagct 184

                                       
Query: 191 ccaaggccaacaggttcacngtcatggc 218
            |||||||||||||||||| ||||||||
Sbjct: 185 tcaaggccaacaggttcaccgtcatggc 212

---

>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  210 bits (106), Expect = 1e-51
 Identities = 115/117 (98%), Gaps = 1/117 (0%)
 Strand = Plus / Plus

                                                                        
Query: 110  ggcttctacgccgaccaacttcctcgggaagaagctcaagtaagcaggtgacctcggccg 169
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 5518 ggcttctacgccgaccaacttcctcgggaagaagctcaag-aagcaggtgacctcggccg 5576

                                                                     
Query: 170  tgaactaccatggcaagagctccaaggccaacaggttcacngtcatggcagcggaga 226
            |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 5577 tgaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggaga 5633



 Score =  186 bits (94), Expect = 2e-44
 Identities = 101/102 (99%), Gaps = 1/102 (0%)
 Strand = Plus / Plus

                                                                        
Query: 10   cactgatcaccagcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagca 69
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5298 cactgatcaccagcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagca 5356

                                                      
Query: 70   cagagatggctgctgccttctcctccaccgtcggggctccgg 111
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5357 cagagatggctgctgccttctcctccaccgtcggggctccgg 5398

---

>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase (rca) mRNA, complete cds
          Length = 1675

 Score =  159 bits (80), Expect = 5e-36
 Identities = 123/136 (90%), Gaps = 1/136 (0%)
 Strand = Plus / Plus

                                                                       
Query: 73  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 132
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 33  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 92

                                                                       
Query: 133 tcgggaagaagctcaagtaagcaggtgacctcggccgtgaactaccatggcaagagctcc 192
           | ||||||||||| ||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 93  tggggaagaagctgaag-aagcaggtgacatcggcggtgaactaccatggcaagagctcc 151

                           
Query: 193 aaggccaacaggttca 208
           ||   |||||||||||
Sbjct: 152 aacatcaacaggttca 167

---

>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for
           ribulose-bisphosphate carboxylase activase large isoform
           precursor protein, complete cds, clone: 13YPR038
          Length = 1558

 Score =  159 bits (80), Expect = 5e-36
 Identities = 123/136 (90%), Gaps = 1/136 (0%)
 Strand = Plus / Plus

                                                                       
Query: 73  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 132
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 25  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 84

                                                                       
Query: 133 tcgggaagaagctcaagtaagcaggtgacctcggccgtgaactaccatggcaagagctcc 192
           | ||||||||||| ||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 85  tggggaagaagctgaag-aagcaggtgacatcggcggtgaactaccatggcaagagctcc 143

                           
Query: 193 aaggccaacaggttca 208
           ||   |||||||||||
Sbjct: 144 aacatcaacaggttca 159

---

>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
           insert sequence
          Length = 1721

 Score =  159 bits (80), Expect = 5e-36
 Identities = 123/136 (90%), Gaps = 1/136 (0%)
 Strand = Plus / Plus

                                                                       
Query: 73  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 132
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 73  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 132

                                                                       
Query: 133 tcgggaagaagctcaagtaagcaggtgacctcggccgtgaactaccatggcaagagctcc 192
           | ||||||||||| ||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 133 tggggaagaagctgaag-aagcaggtgacatcggcggtgaactaccatggcaagagctcc 191

                           
Query: 193 aaggccaacaggttca 208
           ||   |||||||||||
Sbjct: 192 aacatcaacaggttca 207

---

>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
           insert sequence
          Length = 1682

 Score =  159 bits (80), Expect = 5e-36
 Identities = 123/136 (90%), Gaps = 1/136 (0%)
 Strand = Plus / Plus

                                                                       
Query: 73  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 132
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 61  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120

                                                                       
Query: 133 tcgggaagaagctcaagtaagcaggtgacctcggccgtgaactaccatggcaagagctcc 192
           | ||||||||||| ||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 121 tggggaagaagctgaag-aagcaggtgacatcggcggtgaactaccatggcaagagctcc 179

                           
Query: 193 aaggccaacaggttca 208
           ||   |||||||||||
Sbjct: 180 aacatcaacaggttca 195

---

>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
           insert sequence
          Length = 1680

 Score =  159 bits (80), Expect = 5e-36
 Identities = 123/136 (90%), Gaps = 1/136 (0%)
 Strand = Plus / Plus

                                                                       
Query: 73  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 132
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 62  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 121

                                                                       
Query: 133 tcgggaagaagctcaagtaagcaggtgacctcggccgtgaactaccatggcaagagctcc 192
           | ||||||||||| ||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 122 tggggaagaagctgaag-aagcaggtgacatcggcggtgaactaccatggcaagagctcc 180

                           
Query: 193 aaggccaacaggttca 208
           ||   |||||||||||
Sbjct: 181 aacatcaacaggttca 196

---

>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
           insert sequence
          Length = 1691

 Score =  159 bits (80), Expect = 5e-36
 Identities = 123/136 (90%), Gaps = 1/136 (0%)
 Strand = Plus / Plus

                                                                       
Query: 73  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 132
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 61  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120

                                                                       
Query: 133 tcgggaagaagctcaagtaagcaggtgacctcggccgtgaactaccatggcaagagctcc 192
           | ||||||||||| ||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 121 tggggaagaagctgaag-aagcaggtgacatcggcggtgaactaccatggcaagagctcc 179

                           
Query: 193 aaggccaacaggttca 208
           ||   |||||||||||
Sbjct: 180 aacatcaacaggttca 195

---

>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
           precursor, complete cds
          Length = 1623

 Score =  159 bits (80), Expect = 5e-36
 Identities = 123/136 (90%), Gaps = 1/136 (0%)
 Strand = Plus / Plus

                                                                       
Query: 73  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 132
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 60  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 119

                                                                       
Query: 133 tcgggaagaagctcaagtaagcaggtgacctcggccgtgaactaccatggcaagagctcc 192
           | ||||||||||| ||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 120 tggggaagaagctgaag-aagcaggtgacatcggcggtgaactaccatggcaagagctcc 178

                           
Query: 193 aaggccaacaggttca 208
           ||   |||||||||||
Sbjct: 179 aacatcaacaggttca 194

---

>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
           precursor, complete cds
          Length = 1706

 Score =  151 bits (76), Expect = 1e-33
 Identities = 122/136 (89%), Gaps = 1/136 (0%)
 Strand = Plus / Plus

                                                                       
Query: 73  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 132
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 66  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 125

                                                                       
Query: 133 tcgggaagaagctcaagtaagcaggtgacctcggccgtgaactaccatggcaagagctcc 192
           | ||||||||||| ||  ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 126 tggggaagaagctgaa-aaagcaggtgacatcggcggtgaactaccatggcaagagctcc 184

                           
Query: 193 aaggccaacaggttca 208
           ||   |||||||||||
Sbjct: 185 aacatcaacaggttca 200

---

>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  105 bits (53), Expect = 6e-20
 Identities = 81/89 (91%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                          
Query: 120    ccgaccaacttcctcgggaagaagctcaagtaagcaggtgacctcggccgtgaactacca 179
              |||||||||||||| ||||||||||| ||| ||||||||||| ||||| |||||||||||
Sbjct: 109838 ccgaccaacttcctggggaagaagctgaag-aagcaggtgacatcggcggtgaactacca 109780

                                           
Query: 180    tggcaagagctccaaggccaacaggttca 208
              |||||||||||||||   |||||||||||
Sbjct: 109779 tggcaagagctccaacatcaacaggttca 109751



 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                     
Query: 73     agatggctgctgccttctcctccaccgtcggggctccgg 111
              |||||||||||||||||||||||||||| || |||||||
Sbjct: 109984 agatggctgctgccttctcctccaccgttggagctccgg 109946

---

>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  105 bits (53), Expect = 6e-20
 Identities = 81/89 (91%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                         
Query: 120   ccgaccaacttcctcgggaagaagctcaagtaagcaggtgacctcggccgtgaactacca 179
             |||||||||||||| ||||||||||| ||| ||||||||||| ||||| |||||||||||
Sbjct: 31715 ccgaccaacttcctggggaagaagctgaag-aagcaggtgacatcggcggtgaactacca 31657

                                          
Query: 180   tggcaagagctccaaggccaacaggttca 208
             |||||||||||||||   |||||||||||
Sbjct: 31656 tggcaagagctccaacatcaacaggttca 31628



 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                    
Query: 73    agatggctgctgccttctcctccaccgtcggggctccgg 111
             |||||||||||||||||||||||||||| || |||||||
Sbjct: 31861 agatggctgctgccttctcctccaccgttggagctccgg 31823

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  105 bits (53), Expect = 6e-20
 Identities = 81/89 (91%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                            
Query: 120      ccgaccaacttcctcgggaagaagctcaagtaagcaggtgacctcggccgtgaactacca 179
                |||||||||||||| ||||||||||| ||| ||||||||||| ||||| |||||||||||
Sbjct: 28304977 ccgaccaacttcctggggaagaagctgaag-aagcaggtgacatcggcggtgaactacca 28304919

                                             
Query: 180      tggcaagagctccaaggccaacaggttca 208
                |||||||||||||||   |||||||||||
Sbjct: 28304918 tggcaagagctccaacatcaacaggttca 28304890



 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 73       agatggctgctgccttctcctccaccgtcggggctccgg 111
                |||||||||||||||||||||||||||| || |||||||
Sbjct: 28305123 agatggctgctgccttctcctccaccgttggagctccgg 28305085

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  105 bits (53), Expect = 6e-20
 Identities = 81/89 (91%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                            
Query: 120      ccgaccaacttcctcgggaagaagctcaagtaagcaggtgacctcggccgtgaactacca 179
                |||||||||||||| ||||||||||| ||| ||||||||||| ||||| |||||||||||
Sbjct: 28287426 ccgaccaacttcctggggaagaagctgaag-aagcaggtgacatcggcggtgaactacca 28287368

                                             
Query: 180      tggcaagagctccaaggccaacaggttca 208
                |||||||||||||||   |||||||||||
Sbjct: 28287367 tggcaagagctccaacatcaacaggttca 28287339



 Score = 61.9 bits (31), Expect = 8e-07
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 73       agatggctgctgccttctcctccaccgtcggggctccgg 111
                |||||||||||||||||||||||||||| || |||||||
Sbjct: 28287572 agatggctgctgccttctcctccaccgttggagctccgg 28287534

---

>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
           precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 81.8 bits (41), Expect = 8e-13
 Identities = 106/127 (83%), Gaps = 8/127 (6%)
 Strand = Plus / Plus

                                                                       
Query: 75  atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 128
           ||||| || |||||||||||||||||||| |||||||| || || |||||||       |
Sbjct: 21  atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80

                                                                       
Query: 129 ttcctcgggaagaagctcaagtaa--gcaggtgacctcggccgtgaactaccatggcaag 186
           ||||||||||||||||||||  |   ||||||| || ||||||||| |||||||||||||
Sbjct: 81  ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140

                  
Query: 187 agctcca 193
           |||||||
Sbjct: 141 agctcca 147

---

>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 81.8 bits (41), Expect = 8e-13
 Identities = 106/127 (83%), Gaps = 8/127 (6%)
 Strand = Plus / Plus

                                                                       
Query: 75  atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 128
           ||||| || |||||||||||||||||||| |||||||| || || |||||||       |
Sbjct: 21  atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80

                                                                       
Query: 129 ttcctcgggaagaagctcaagtaa--gcaggtgacctcggccgtgaactaccatggcaag 186
           ||||||||||||||||||||  |   ||||||| || ||||||||| |||||||||||||
Sbjct: 81  ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140

                  
Query: 187 agctcca 193
           |||||||
Sbjct: 141 agctcca 147

---

>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B
           (RcaB) mRNA, complete cds; nuclear gene for chloroplast
           product
          Length = 1525

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                       
Query: 74  gatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcct 133
           ||||||| |||| ||||| |||||||| || |||||||| || || ||||||| ||||||
Sbjct: 25  gatggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccaccttcct 84

                     
Query: 134 cgggaagaag 143
           ||||||||||
Sbjct: 85  cgggaagaag 94

---

>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                
Query: 190 tccaaggccaacaggttcacngtcatggcagcggaga 226
           |||||||||||||||||||| ||||||||||||||||
Sbjct: 1   tccaaggccaacaggttcacagtcatggcagcggaga 37

---

>emb|CR701838.2|CNS0G4HM Tetraodon nigroviridis full-length cDNA
          Length = 929

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 65  cagcacagagatggctgctgc 85
           |||||||||||||||||||||
Sbjct: 531 cagcacagagatggctgctgc 511

---

>emb|CR686472.2|CNS0FSMS Tetraodon nigroviridis full-length cDNA
          Length = 939

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 65  cagcacagagatggctgctgc 85
           |||||||||||||||||||||
Sbjct: 541 cagcacagagatggctgctgc 521

---

>emb|CR681817.2|CNS0FP1H Tetraodon nigroviridis full-length cDNA
          Length = 992

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 65  cagcacagagatggctgctgc 85
           |||||||||||||||||||||
Sbjct: 595 cagcacagagatggctgctgc 575

---

>emb|CR680161.1|CNS0FNRH Tetraodon nigroviridis full-length cDNA
          Length = 1318

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 65  cagcacagagatggctgctgc 85
           |||||||||||||||||||||
Sbjct: 932 cagcacagagatggctgctgc 912

---

>emb|CR675309.2|CNS0FK1F Tetraodon nigroviridis full-length cDNA
          Length = 1006

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 65  cagcacagagatggctgctgc 85
           |||||||||||||||||||||
Sbjct: 609 cagcacagagatggctgctgc 589

---

>gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 mRNA, complete cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  tggctgctgccttctcctcc 95
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696

---

>ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrotestosterone receptor;
            testicular feminization; spinal and bulbar muscular
            atrophy; Kennedy disease) (AR), mRNA
          Length = 3577

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 182  gcaagagctccaaggccaac 201
            ||||||||||||||||||||
Sbjct: 3271 gcaagagctccaaggccaac 3290

---

>ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1 (NOLC1),
           mRNA
          Length = 2502

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  tggctgctgccttctcctcc 95
           ||||||||||||||||||||
Sbjct: 766 tggctgctgccttctcctcc 747

---

>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
          Length = 384518

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     ctgccttctcctccaccgtc 101
              ||||||||||||||||||||
Sbjct: 240861 ctgccttctcctccaccgtc 240842

---

>gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA
           clone MGC:1494 IMAGE:3533568), complete cds
          Length = 2464

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  tggctgctgccttctcctcc 95
           ||||||||||||||||||||
Sbjct: 722 tggctgctgccttctcctcc 703

---

>ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain helicase DNA binding
            protein 4 (LOC506402), mRNA
          Length = 7219

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 79   ctgctgccttctcctccacc 98
            ||||||||||||||||||||
Sbjct: 5008 ctgctgccttctcctccacc 4989

---

>gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite sequence
          Length = 457

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 79 ctgctgccttctcctccacc 98
          ||||||||||||||||||||
Sbjct: 65 ctgctgccttctcctccacc 46

---

>gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite sequence
          Length = 470

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 79 ctgctgccttctcctccacc 98
          ||||||||||||||||||||
Sbjct: 65 ctgctgccttctcctccacc 46

---

>gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA
           clone MGC:5049 IMAGE:2900024), complete cds
          Length = 3237

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  tggctgctgccttctcctcc 95
           ||||||||||||||||||||
Sbjct: 232 tggctgctgccttctcctcc 213

---

>emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on chromosome 10 Contains the
              gene for  Hermansky-Pudlak syndrome-6 protein (HPS6), two
              pseudogenes for  transcription elongation factor B (SIII),
              polypeptide 1, the LDB1 gene for LIM domain binding 1, a
              novel gene (KIAA0595), the NOLC1 gene for nucleolar and
              coiled-body phosphoprotein 1 and five CpG islands, complete
              sequence
          Length = 158434

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 76     tggctgctgccttctcctcc 95
              ||||||||||||||||||||
Sbjct: 101054 tggctgctgccttctcctcc 101035

---

>gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and coiled-body
           phosphoprotein 1 mRNA, partial cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  tggctgctgccttctcctcc 95
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696

---

>emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1812

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  tggctgctgccttctcctcc 95
           ||||||||||||||||||||
Sbjct: 717 tggctgctgccttctcctcc 698

---

>dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE6002345, highly similar
           to H.sapiens mRNA for nucleolar phosphoprotein p130
          Length = 2288

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  tggctgctgccttctcctcc 95
           ||||||||||||||||||||
Sbjct: 570 tggctgctgccttctcctcc 551

---

>gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-470F15, complete sequence
          Length = 177104

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 69     acagagatggctgctgcctt 88
              ||||||||||||||||||||
Sbjct: 121162 acagagatggctgctgcctt 121143

---

>gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, complete cds
          Length = 3577

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 182  gcaagagctccaaggccaac 201
            ||||||||||||||||||||
Sbjct: 3271 gcaagagctccaaggccaac 3290

---

>gb|AC154546.2| Mus musculus BAC clone RP23-431I7 from chromosome 16, complete sequence
          Length = 180261

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                      
Query: 52     aaggtcgaccaagcagcacagagatggctgctgccttctc 91
              |||||| |||||  ||||||| || |||||||||||||||
Sbjct: 111680 aaggtccaccaatgagcacagtgagggctgctgccttctc 111719

---

>gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209.01L nucleolar and
           coiled-body phosphoprotein 1 (NOLC1) mRNA, partial cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  tggctgctgccttctcctcc 95
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696

---

>gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 209755

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    tggctgctgccttctcctcc 95
             ||||||||||||||||||||
Sbjct: 46900 tggctgctgccttctcctcc 46919

---

>dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds
          Length = 3727

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  tggctgctgccttctcctcc 95
           ||||||||||||||||||||
Sbjct: 708 tggctgctgccttctcctcc 689

---

>dbj|AP003156.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-56O15, complete
              sequences
          Length = 162128

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 52     aaggtcgaccaagcagcacagagatggctgctgccttctc 91
              |||||| |||||  ||||||| || |||||||||||||||
Sbjct: 108212 aaggtccaccaatgagcacagtgagggctgctgccttctc 108173

---

>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome
          Length = 2056416

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 72     gagatggctgctgccttctcctcc 95
              ||||||||||||||||||| ||||
Sbjct: 472845 gagatggctgctgccttctgctcc 472822

---

>gb|AC152058.8| Mus musculus BAC clone RP24-327D15 from chromosome 10, complete sequence
          Length = 204754

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 145    tcaagtaagcaggtgacctc 164
              ||||||||||||||||||||
Sbjct: 104515 tcaagtaagcaggtgacctc 104496

---

>emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein p130
          Length = 2502

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  tggctgctgccttctcctcc 95
           ||||||||||||||||||||
Sbjct: 766 tggctgctgccttctcctcc 747


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,687,037
Number of Sequences: 3902068
Number of extensions: 1687037
Number of successful extensions: 118046
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117856
Number of HSP's gapped (non-prelim): 170
length of query: 226
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 204
effective length of database: 17,147,199,772
effective search space: 3498028753488
effective search space used: 3498028753488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---