>ARX_HUMAN (Q96QS3) Homeobox protein ARX (Aristaless-related homeobox)|
          Length = 562

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +1

Query: 61  AYLCQPPEMTPCVDPIGADMVQSRHGPAACKGPGLAHQMCSLSGPRGERPP*P 219
           A L  PP++     P G  ++Q     AA      A    + +GPRGE PP P
Sbjct: 77  AELHLPPKLRRLYGPGGGRLLQGAAAAAAAAAAAAAAAATATAGPRGEAPPPP 129

>MEF2B_MOUSE (O55087) Myocyte-specific enhancer factor 2B|
          Length = 349

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 55  ELAYLCQPPEMTPCVDPIGADMVQSRHG-PAACKGPGLAHQMCSLSGPRGERPP 213
           EL+Y  + P  TP  DP G   V S H  PA  + PGL H + S S    + PP
Sbjct: 141 ELSY--RVPPATPGCDPGGLGEVPSVHSRPAYFRPPGLGHPIFSPSHLASKTPP 192

>TMM91_MOUSE (Q8C581) Transmembrane protein 91|
          Length = 172

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 19/32 (59%), Positives = 20/32 (62%), Gaps = 5/32 (15%)
 Frame = -3

Query: 226 KDWAKGDVHHAGL---KASTSGVL--GLGLCT 146
           K WAKGDV  AG    +A   GVL  GLGLCT
Sbjct: 123 KAWAKGDVQGAGAASRRAFLLGVLAVGLGLCT 154

>PIGF_HUMAN (Q07326) Phosphatidylinositol-glycan biosynthesis, class F protein|
           (PIG-F) (GPI11 homolog)
          Length = 219

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 167 ARPGPLHAAGPWRDWTMSAPIGSTHGVISG 78
           A P PL    PW+ W +S  +G+T G ++G
Sbjct: 170 ALPIPLDWERPWQVWPISCTLGATFGYVAG 199

>ZFHX2_HUMAN (Q9C0A1) Zinc finger homeobox protein 2|
          Length = 1427

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 20/65 (30%), Positives = 25/65 (38%)
 Frame = +1

Query: 76   PPEMTPCVDPIGADMVQSRHGPAACKGPGLAHQMCSLSGPRGERPP*PNLSPWAYHSCVA 255
            PP  TP   P+GA     R  P    GP LA            +PP  NL+P+      +
Sbjct: 1059 PPATTPASMPLGAAPTLPRLAPVLLSGPALA------------QPPLGNLAPFNSGPAAS 1106

Query: 256  SNRFG 270
            S   G
Sbjct: 1107 SGLLG 1111

>PCDGJ_PANTR (Q5DRA5) Protocadherin gamma B7 precursor (PCDH-gamma-B7)|
          Length = 929

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +1

Query: 175 MCSLSGPRGERPP*PNLS----PWAYHSCVASNRFGPLYFFSSSQRIC 306
           +CS SGP G     PN S    P+AY+ CV  ++  P + F +S   C
Sbjct: 731 LCSKSGPVGP----PNYSEGTLPYAYNFCVPGDQMNPEFNFFASVDHC 774

>PCDGJ_HUMAN (Q9Y5F8) Protocadherin gamma B7 precursor (PCDH-gamma-B7)|
          Length = 929

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +1

Query: 175 MCSLSGPRGERPP*PNLS----PWAYHSCVASNRFGPLYFFSSSQRIC 306
           +CS SGP G     PN S    P+AY+ CV  ++  P + F +S   C
Sbjct: 731 LCSKSGPVGP----PNYSEGTLPYAYNFCVPGDQMNPEFNFFTSVDHC 774

>PIGF_MOUSE (O09101) Phosphatidylinositol-glycan biosynthesis, class F protein|
           (PIG-F)
          Length = 219

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 167 ARPGPLHAAGPWRDWTMSAPIGSTHGVISG 78
           A P PL    PW+ W +S  +G+T G ++G
Sbjct: 170 AFPIPLDWERPWQVWPISCTLGATFGYVAG 199

>MMP9_MOUSE (P41245) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)|
           (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase)
           (Gelatinase B) (GELB)
          Length = 730

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 19/66 (28%), Positives = 23/66 (34%)
 Frame = +1

Query: 76  PPEMTPCVDPIGADMVQSRHGPAACKGPGLAHQMCSLSGPRGERPP*PNLSPWAYHSCVA 255
           PP M P + P     V    GP     PG         GP G   P P  +P A  S  +
Sbjct: 466 PPTMCPTIPPTAYPTVGPTVGPTGAPSPGPTSS--PSPGPTGAPSPGPTAAPTAGSSEAS 523

Query: 256 SNRFGP 273
           +    P
Sbjct: 524 TESLSP 529

>TLE2_HUMAN (Q04725) Transducin-like enhancer protein 2 (ESG2)|
          Length = 743

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +3

Query: 45  NERGARLPVSTARDDTVRRSDRGRHGPVSPRPSC--VQRPRPSTPDVLAFRPAW*TSPLA 218
           N+  A  P S + D +  + D    GP S    C    +P PST  V    P   +SP  
Sbjct: 292 NDLPASTPASKSCDSSPPQ-DASTPGPSSASHLCQLAAKPAPSTDSVALRSPLTLSSPFT 350

Query: 219 QSFTLG 236
            SF+LG
Sbjct: 351 TSFSLG 356

>TMM91_HUMAN (Q6ZNR0) Transmembrane protein 91|
          Length = 172

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 5/32 (15%)
 Frame = -3

Query: 226 KDWAKGDVHHAGL---KASTSGVL--GLGLCT 146
           K WAKGD+  AG    +A   GVL  GLG+CT
Sbjct: 123 KAWAKGDIQGAGAASRRAFLLGVLAVGLGVCT 154

>ZC3H3_HUMAN (Q8IXZ2) Zinc finger CCCH-type domain-containing protein 3|
          Length = 948

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/56 (33%), Positives = 22/56 (39%)
 Frame = +3

Query: 45  NERGARLPVSTARDDTVRRSDRGRHGPVSPRPSCVQRPRPSTPDVLAFRPAW*TSP 212
           + R A  P     D T R      HGP   +PS  QRP   TP   A   A   +P
Sbjct: 804 SRRAATSPAPGPSDATARSRVSASHGP--RKPSASQRPTRQTPSSAALTAAAVAAP 857

>NANE_KLEAE (Q939I2) Putative N-acetylmannosamine-6-phosphate 2-epimerase (EC|
           5.1.3.9) (ManNAc-6-P epimerase)
          Length = 234

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 231 G*KIGLRGTFTTRA*KRAHLVC*AWAFARSWAVARLDHVC 112
           G ++   G + T A     + C AWA     A+ RL+H+C
Sbjct: 178 GCRVIAEGRYNTPAQAAEAMRCGAWAVTVGSAITRLEHIC 217

>YGBT_ECOLI (Q46896) Hypothetical protein ygbT|
          Length = 305

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 265 ICWKQHNYDTPRVKDWAKGDVHHAGLKASTSGVLGLGLCTQLGRG 131
           + W    YD    KDW KGD  +  + A+TS + G+     L  G
Sbjct: 158 VTWNGRRYDP---KDWEKGDTINQCISAATSCLYGVTEAAILAAG 199

>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein|
          Length = 1509

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
 Frame = +1

Query: 49  SEELAYLCQPPEMTPCV-------DPIGADMVQSRHGPAACKGPGLAHQMCSLSGPRGER 207
           SE   + C PP+  P +       + +G     S   P A  GP           P G  
Sbjct: 764 SEPPLHPCPPPQAPPTLPGIFVIQNQLGVPPPASNPAPTA-PGPPQPPLRPQSQPPEGPL 822

Query: 208 PP*PNLSPWAYHSCVASN 261
           PP P+L P +  S VAS+
Sbjct: 823 PPAPHLPPSSTSSAVASS 840

>NOS3_BOVIN (P29473) Nitric-oxide synthase, endothelial (EC 1.14.13.39)|
           (EC-NOS) (NOS type III) (NOSIII) (Endothelial NOS)
           (eNOS) (Constitutive NOS) (cNOS)
          Length = 1204

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 111 GRHGPVSPRPSCVQRPRPSTPDVLAFRPA 197
           G+ GP SP P   + P P+TP      PA
Sbjct: 26  GKQGPASPAPEPSRAPAPATPHAPDHSPA 54

>ARX_MOUSE (O35085) Homeobox protein ARX (Aristaless-related homeobox)|
          Length = 564

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +1

Query: 61  AYLCQPPEMTPCVDPIGADMVQSRHGPAACKGPGLAHQMCS-LSGPRGERPP*P 219
           A L  PP++     P G  ++Q     AA      A    +  +GPRGE PP P
Sbjct: 77  AELHLPPKLRRLYGPGGGRLLQGAAAAAAAAAAAAAAATATGTAGPRGEVPPPP 130

>K0256_MOUSE (Q6A098) Protein KIAA0256|
          Length = 1086

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +3

Query: 45  NERGARLPVSTARDDTVRRSDRGRHGPVSPRPSCVQR----PRPSTPDVLAFRPAW*TSP 212
           N+ G   P+S+       RS  G  GPV P+P  +Q+     RP   +V   +    T P
Sbjct: 152 NQLGQAFPLSS------HRSRNGNRGPVVPKPQLLQQHIKNKRPQVKNVATQKETSATGP 205

Query: 213 LAQS 224
            ++S
Sbjct: 206 DSRS 209

>NU4C_PANGI (Q68RV6) NAD(P)H-quinone oxidoreductase chain 4, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain 4)
           (NADH-plastoquinone oxidoreductase chain 4)
          Length = 500

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 224 FHPGRIIVVLLPTDSAHCIFFLPH 295
           F P   I+V+LP  +   IFFLPH
Sbjct: 3   FFPWLTIIVVLPIFAGSVIFFLPH 26

>CRX_BOVIN (Q9XSK0) Cone-rod homeobox protein|
          Length = 299

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 79  PEMTPCVDPIGADMVQSRHGPAACKGPGLAHQMCSLSG 192
           P ++P V P+G   +    GP+   GP L     SLSG
Sbjct: 220 PYLSPMVPPLGGPALSPLSGPSV--GPSLTQSPTSLSG 255

>LTK_MOUSE (P08923) Leukocyte tyrosine kinase receptor precursor (EC 2.7.10.1)|
          Length = 888

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = +1

Query: 73  QPPEMTPCVDPIGADMVQSRHGPAACKGPGLAHQMCSLSGPRGERPP*PNLSPWAYHSCV 252
           Q P +TP + P+   +V +         P    +  SL  P G R       PW +++C 
Sbjct: 25  QAPFLTPSLLPV---LVLNSQEQKVTPTPSKL-EPASLPNPLGTR------GPWVFNTCG 74

Query: 253 ASNRFGP 273
           AS R GP
Sbjct: 75  ASGRSGP 81

>ZDHC8_PANTR (Q2THX0) Probable palmitoyltransferase ZDHHC8 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 8) (DHHC-8)
          Length = 765

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
 Frame = +3

Query: 129 SPRPSC------VQRPRPSTPDVLAFRPAW*TSP 212
           +PRP        VQR  P TP +  FRPA+ T P
Sbjct: 332 TPRPGSAESALSVQRTSPPTPAMYKFRPAFPTGP 365

>ZDHC8_HUMAN (Q9ULC8) Probable palmitoyltransferase ZDHHC8 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 8) (DHHC-8) (Zinc
           finger protein 378)
          Length = 765

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
 Frame = +3

Query: 129 SPRPSC------VQRPRPSTPDVLAFRPAW*TSP 212
           +PRP        VQR  P TP +  FRPA+ T P
Sbjct: 332 TPRPGSAESALSVQRTSPPTPAMYKFRPAFPTGP 365

>BAI2_HUMAN (O60241) Brain-specific angiogenesis inhibitor 2 precursor|
          Length = 1572

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 85  MTPCVDPIGADMVQSRHGPAACKGPGLAHQMCSLS 189
           M  CV P        +HG  AC+GP L  ++CS++
Sbjct: 376 MRTCVPP--------QHGGKACEGPELQTKLCSMA 402

>SUH_CIOIN (O76808) Suppressor of hairless homolog (Su(H))|
          Length = 554

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 66  PVSTARDDTVRRSDRGRHGPVSP--RPSCVQRPRPSTPDVLA 185
           PVS + DD+ R ++  R  P+ P  RP+     RP  P+  A
Sbjct: 501 PVSGSEDDSGRGNESDRGDPIMPIKRPALDVHGRPVAPEAAA 542

>ZDHC8_MOUSE (Q5Y5T5) Probable palmitoyltransferase ZDHHC8 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 8) (DHHC-8)
          Length = 762

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
 Frame = +3

Query: 129 SPRPSC------VQRPRPSTPDVLAFRPAW*TSP 212
           +PRP        VQR  P TP +  FRPA+ T P
Sbjct: 330 TPRPGSAESALSVQRTSPPTPAMYKFRPAFSTGP 363

>NOS3_PIG (Q28969) Nitric-oxide synthase, endothelial (EC 1.14.13.39)|
           (EC-NOS) (NOS type III) (NOSIII) (Endothelial NOS)
           (eNOS) (Constitutive NOS) (cNOS)
          Length = 1204

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 111 GRHGPVSPRPSCVQRPRPSTPDVLAFRPA 197
           G+ GP +P P   + P P+TP      PA
Sbjct: 26  GKQGPATPAPEPSRAPAPATPHAPEHSPA 54

>NED4L_PONPY (Q5RBF2) E3 ubiquitin-protein ligase NEDD4-like protein (EC|
           6.3.2.-)
          Length = 959

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 66  PVSTARDDTVRRSDRGR-HGPVSPRPSCVQRPRPSTPDVLAFRP 194
           P+  A+D  VRR+ +     P SP+PS    P+P      +F P
Sbjct: 441 PLEGAKDSPVRRAVKDTLSNPQSPQPSPYNSPKPQHKVTQSFLP 484

>AP2A1_MOUSE (P17426) AP-2 complex subunit alpha-1 (Adapter-related protein|
           complex 2 alpha-1 subunit) (Alpha-adaptin A) (Adaptor
           protein complex AP-2 alpha-1 subunit) (Clathrin assembly
           protein complex 2 alpha-A large chain) (100 kDa coated
           vesicle prote
          Length = 977

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = +3

Query: 54  GARLPVSTARDDTVRRSDRGRHGPVSPRPSCVQRPRPSTPDVLAFRPA 197
           GA   +  +R DT   S    +G V P PS V  P PS  D+L  R A
Sbjct: 623 GAASALDDSRRDT---SSNDINGGVEPTPSTVSTPSPSA-DLLGLRAA 666

>DHX8_ARATH (Q38953) Probable pre-mRNA-splicing factor ATP-dependent RNA|
           helicase (EC 3.6.1.-)
          Length = 1168

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 97  VDPIGADMVQSRHGPAACKGPGLAHQMCSLSGPRGERPP 213
           + PI     + R G A   GPG  +++ + S  R E PP
Sbjct: 826 ITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMPP 864

>AMPA_NEIMA (Q9JTI8) Probable cytosol aminopeptidase (EC 3.4.11.1) (Leucine|
           aminopeptidase) (LAP) (Leucyl aminopeptidase)
          Length = 468

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = -3

Query: 190 LKASTSGVLGLGLCTQLGRGETGPCLPRSDLRTVSSRAVDTGRRA 56
           L+ + + V G  LC  LG      C P    RT  + A   G  A
Sbjct: 149 LRVAEAQVYGQSLCRDLGNAAPNECTPEFLARTAKAEAEKLGAHA 193

>PGCA_HUMAN (P16112) Aggrecan core protein precursor (Cartilage-specific|
           proteoglycan core protein) (CSPCP) (Chondroitin sulfate
           proteoglycan core protein 1) [Contains: Aggrecan core
           protein 2]
          Length = 2415

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +1

Query: 79  PEMTPCVDPIGADMVQSRHGPAACKGPGLAHQMCSLSGPRGERPP*PNLSPW 234
           P + P   P GA+  +S  GP+A + P  + +      P     P P+  P+
Sbjct: 754 PGILPTWPPTGAETEESTEGPSATEVPSASEEPSPSEVPFPSEEPSPSEEPF 805

>PLB4_SCHPO (Q9P327) Putative lysophospholipase C977.09c/C1348.10c precursor|
           (EC 3.1.1.5) (Phospholipase B)
          Length = 673

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 203 NVPLSPIFHPGRIIVVLLPTDSAH 274
           N+PL P+ HP R + V+   DS +
Sbjct: 433 NIPLWPLLHPQRFVDVVFAIDSTY 456

>LCR19_ARATH (P82733) Putative low-molecular-weight cysteine-rich protein LCR19|
           precursor
          Length = 126

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = +1

Query: 94  CVDPIG----ADM-VQSRHGPAACKGPGLAHQMCSLSGPRGERPP*PNLSPWAYHSCVAS 258
           C++ IG     D+  ++RHGPAA        Q+C+ + P G+ P  P        + + S
Sbjct: 29  CIEGIGNCQQCDVRCKARHGPAAKGACDSKFQLCTCNYPCGQGPSPPQPKKCYGGAGICS 88

Query: 259 NRFG 270
           +R G
Sbjct: 89  DRCG 92

>NED4L_HUMAN (Q96PU5) E3 ubiquitin-protein ligase NEDD4-like protein (EC|
           6.3.2.-) (Nedd4-2) (NEDD4.2)
          Length = 975

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 66  PVSTARDDTVRRSDRGR-HGPVSPRPSCVQRPRPSTPDVLAFRP 194
           P+  A+D  VRR+ +     P SP+PS    P+P      +F P
Sbjct: 457 PLEGAKDSPVRRAVKDTLSNPQSPQPSPYNSPKPQHKVTQSFLP 500

>HUG1_HUMAN (O75698) Protein HUG-1 (HOX11 upstream gene 1 protein)|
          Length = 362

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +3

Query: 39  PCNERGARLP--VSTARDDTVRRSDRGRHGPVSPRPSCVQRPRPSTPDVLAFRP 194
           P +  G+R P    + RD+ +   +RGR GP   R   +   RPS P     RP
Sbjct: 199 PQSSWGSRAPRAARSPRDNGIISGERGRLGPGLRRRRLLPSIRPSAPKERLRRP 252


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,228,115
Number of Sequences: 219361
Number of extensions: 1196124
Number of successful extensions: 3444
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 3243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3440
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)