No.
Definition
Score (bits)
E Value
1 ref|XM_475203.1| Oryza sativa (japonica cultivar-group), predic...
559
e-156
2 dbj|AK067298.1| Oryza sativa (japonica cultivar-group) cDNA clon...
559
e-156
3 gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome...
232
1e-57
4 gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome...
232
1e-57
5 dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D...
232
1e-57
6 emb|BX820289.1|CNS0A8QZ Arabidopsis thaliana Full-length cDNA Co...
58
3e-05
7 ref|NM_128710.2| Arabidopsis thaliana EMB2289; protein transloca...
48
0.032
8 ref|XM_368718.1| Magnaporthe grisea 70-15 chromosome VI hypothet...
44
0.50
9 ref|XM_587644.2| PREDICTED: Bos taurus similar to PR domain cont...
44
0.50
10 ref|XM_865466.1| PREDICTED: Bos taurus similar to PR domain cont...
44
0.50
11 gb|AC083799.17| Homo sapiens 3 BAC RP11-332M2 (Roswell Park Canc...
44
0.50
12 gb|AC113204.7| Mus musculus chromosome 12, clone RP23-312J1, com...
42
2.0
13 dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...
42
2.0
14 gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...
42
2.0
15 emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa...
42
2.0
16 gb|AC110980.6| Rattus norvegicus 4 BAC CH230-94D15 (Children's H...
40
7.9
17 emb|AL139041.17| Human DNA sequence from clone RP11-408O19 on ch...
40
7.9
18 gb|AC159882.2| Mus musculus BAC clone RP24-480A4 from chromosome...
40
7.9
19 emb|AL663083.5| Mouse DNA sequence from clone RP23-280G3 on chro...
40
7.9
20 dbj|AB210222.1| Setaria italica GBSS1 gene, transposable element...
40
7.9
21 dbj|AB210215.1| Setaria italica GBSS1 gene, transposable element...
40
7.9
22 dbj|AB210214.1| Setaria italica GBSS1 gene, transposable element...
40
7.9
23 gb|AC011118.13| Homo sapiens chromosome 8, clone RP11-163D8, com...
40
7.9
24 gb|AC104358.4| Homo sapiens chromosome 8, clone RP11-151L10, com...
40
7.9
25 dbj|AK147615.1| Mus musculus adult male brain UNDEFINED_CELL_LIN...
40
7.9
26 dbj|AP002089.2| Homo sapiens genomic DNA, chromosome 8q23, clone...
40
7.9
27 dbj|AP005622.3| Homo sapiens genomic DNA, chromosome 8q23, clone...
40
7.9
28 gb|AC134918.5| Mus musculus BAC clone RP23-71G16 from 3, complet...
40
7.9
29 dbj|AP003786.2| Homo sapiens genomic DNA, chromosome 8q23, clone...
40
7.9
>gb|AC132492.3 | Oryza sativa (japonica cultivar-group) chromosome 5 clone P0605G01,
complete sequence
Length = 146303
Score = 232 bits (117), Expect = 1e-57
Identities = 181/201 (90%), Gaps = 1/201 (0%)
Strand = Plus / Minus
Query: 5 caggttcctggcacctggcgcggcttggggccgtggcggagggcgcggcggaggccttct 64
||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||| |||
Sbjct: 12862 caggttcctgg-acctggcgcggctgggggccgtggcggagagcgcggcggaggcgctct 12804
Query: 65 tccgcagcgaaatacggcggcggcttgccgtcacggccgtgctcatcgtgctcagccgcg 124
|||||||||| || || |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 12803 tccgcagcgagattcgccggcggctggccgtcacggccgtgctcatcctgctcagccgcg 12744
Query: 125 tcggctacttcgtgccgcttcctgggttcgaccgccgcctcatccccgactcctatctca 184
||||||||||||| |||||||| ||||||||||| || ||||||||||| ||||| ||||
Sbjct: 12743 tcggctacttcgtcccgcttcccgggttcgaccgacggctcatccccgattcctacctca 12684
Query: 185 gcttcgccccgctccctgcag 205
|||| || || || |||||||
Sbjct: 12683 gctttgcaccccttcctgcag 12663
Score = 117 bits (59), Expect = 4e-23
Identities = 89/99 (89%)
Strand = Plus / Minus
Query: 201 tgcagatgacctcgttgattttgcttctgaactgaagctatcatttttccagctgggaat 260
|||||||||||||| ||||||| | || ||| ||||||| |||||||||||||| |||||
Sbjct: 12532 tgcagatgacctcggtgatttttcatccgaattgaagctgtcatttttccagctcggaat 12473
Query: 261 cagtcatcagatatcagcatcgattgtgatgcaggttct 299
|||||||||||| |||||||| ||||| |||||||||||
Sbjct: 12472 cagtcatcagatttcagcatctattgtcatgcaggttct 12434
Score = 83.8 bits (42), Expect = 6e-13
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 293 aggttctttgccatgttcttccatcacttgaaaagattcgcaaggaaggattagacgggc 352
||||||| || ||||||||||||||||||||||| | || |||||||| ||||| || |
Sbjct: 12214 aggttctctgtcatgttcttccatcacttgaaaaactacgaaaggaagggttagatggac 12155
Query: 353 atgagaagatcaaaagctatat 374
|||||||||||||| |||||||
Sbjct: 12154 atgagaagatcaaaggctatat 12133
Score = 83.8 bits (42), Expect = 6e-13
Identities = 78/90 (86%)
Strand = Plus / Minus
Query: 376 tggtggctatcactgggttttgcaattgtggctgcttgtactgtgtcatgctattcgctg 435
|||||||| || |||||||||||| ||||||| |||| ||| ||||||||||| || |||
Sbjct: 12019 tggtggctgtcgctgggttttgcacttgtggcggcttttacagtgtcatgctactcactg 11960
Query: 436 cagtactccatatatgcagcaagttacagg 465
|| || || |||||||| ||||||||||||
Sbjct: 11959 caatattctatatatgctgcaagttacagg 11930
Score = 60.0 bits (30), Expect = 8e-06
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 466 gttaagcatgtcatattaacaagctttctgcttgtcctcggtgcaatgtcaacgacttgg 525
||||||||||| || |||||||| || | ||||| || ||||||||| ||| ||| |||
Sbjct: 11817 gttaagcatgtaatgataacaagccttttccttgttcttggtgcaatgacaatgacatgg 11758
Query: 526 atctgtnncaccataacggaatctggctttgg 557
|||||| ||| ||| |||||||||| |||||
Sbjct: 11757 atctgtgacactatatcggaatctggatttgg 11726
>gb|AC134932.2 | Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0092G21,
complete sequence
Length = 151267
Score = 232 bits (117), Expect = 1e-57
Identities = 181/201 (90%), Gaps = 1/201 (0%)
Strand = Plus / Minus
Query: 5 caggttcctggcacctggcgcggcttggggccgtggcggagggcgcggcggaggccttct 64
||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||| |||
Sbjct: 130684 caggttcctgg-acctggcgcggctgggggccgtggcggagagcgcggcggaggcgctct 130626
Query: 65 tccgcagcgaaatacggcggcggcttgccgtcacggccgtgctcatcgtgctcagccgcg 124
|||||||||| || || |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 130625 tccgcagcgagattcgccggcggctggccgtcacggccgtgctcatcctgctcagccgcg 130566
Query: 125 tcggctacttcgtgccgcttcctgggttcgaccgccgcctcatccccgactcctatctca 184
||||||||||||| |||||||| ||||||||||| || ||||||||||| ||||| ||||
Sbjct: 130565 tcggctacttcgtcccgcttcccgggttcgaccgacggctcatccccgattcctacctca 130506
Query: 185 gcttcgccccgctccctgcag 205
|||| || || || |||||||
Sbjct: 130505 gctttgcaccccttcctgcag 130485
Score = 117 bits (59), Expect = 4e-23
Identities = 89/99 (89%)
Strand = Plus / Minus
Query: 201 tgcagatgacctcgttgattttgcttctgaactgaagctatcatttttccagctgggaat 260
|||||||||||||| ||||||| | || ||| ||||||| |||||||||||||| |||||
Sbjct: 130354 tgcagatgacctcggtgatttttcatccgaattgaagctgtcatttttccagctcggaat 130295
Query: 261 cagtcatcagatatcagcatcgattgtgatgcaggttct 299
|||||||||||| |||||||| ||||| |||||||||||
Sbjct: 130294 cagtcatcagatttcagcatctattgtcatgcaggttct 130256
Score = 83.8 bits (42), Expect = 6e-13
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 293 aggttctttgccatgttcttccatcacttgaaaagattcgcaaggaaggattagacgggc 352
||||||| || ||||||||||||||||||||||| | || |||||||| ||||| || |
Sbjct: 130036 aggttctctgtcatgttcttccatcacttgaaaaactacgaaaggaagggttagatggac 129977
Query: 353 atgagaagatcaaaagctatat 374
|||||||||||||| |||||||
Sbjct: 129976 atgagaagatcaaaggctatat 129955
Score = 83.8 bits (42), Expect = 6e-13
Identities = 78/90 (86%)
Strand = Plus / Minus
Query: 376 tggtggctatcactgggttttgcaattgtggctgcttgtactgtgtcatgctattcgctg 435
|||||||| || |||||||||||| ||||||| |||| ||| ||||||||||| || |||
Sbjct: 129841 tggtggctgtcgctgggttttgcacttgtggcggcttttacagtgtcatgctactcactg 129782
Query: 436 cagtactccatatatgcagcaagttacagg 465
|| || || |||||||| ||||||||||||
Sbjct: 129781 caatattctatatatgctgcaagttacagg 129752
Score = 60.0 bits (30), Expect = 8e-06
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 466 gttaagcatgtcatattaacaagctttctgcttgtcctcggtgcaatgtcaacgacttgg 525
||||||||||| || |||||||| || | ||||| || ||||||||| ||| ||| |||
Sbjct: 129639 gttaagcatgtaatgataacaagccttttccttgttcttggtgcaatgacaatgacatgg 129580
Query: 526 atctgtnncaccataacggaatctggctttgg 557
|||||| ||| ||| |||||||||| |||||
Sbjct: 129579 atctgtgacactatatcggaatctggatttgg 129548
>dbj|AP008211.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 232 bits (117), Expect = 1e-57
Identities = 181/201 (90%), Gaps = 1/201 (0%)
Strand = Plus / Minus
Query: 5 caggttcctggcacctggcgcggcttggggccgtggcggagggcgcggcggaggccttct 64
||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||| |||
Sbjct: 19208786 caggttcctgg-acctggcgcggctgggggccgtggcggagagcgcggcggaggcgctct 19208728
Query: 65 tccgcagcgaaatacggcggcggcttgccgtcacggccgtgctcatcgtgctcagccgcg 124
|||||||||| || || |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 19208727 tccgcagcgagattcgccggcggctggccgtcacggccgtgctcatcctgctcagccgcg 19208668
Query: 125 tcggctacttcgtgccgcttcctgggttcgaccgccgcctcatccccgactcctatctca 184
||||||||||||| |||||||| ||||||||||| || ||||||||||| ||||| ||||
Sbjct: 19208667 tcggctacttcgtcccgcttcccgggttcgaccgacggctcatccccgattcctacctca 19208608
Query: 185 gcttcgccccgctccctgcag 205
|||| || || || |||||||
Sbjct: 19208607 gctttgcaccccttcctgcag 19208587
Score = 117 bits (59), Expect = 4e-23
Identities = 89/99 (89%)
Strand = Plus / Minus
Query: 201 tgcagatgacctcgttgattttgcttctgaactgaagctatcatttttccagctgggaat 260
|||||||||||||| ||||||| | || ||| ||||||| |||||||||||||| |||||
Sbjct: 19208456 tgcagatgacctcggtgatttttcatccgaattgaagctgtcatttttccagctcggaat 19208397
Query: 261 cagtcatcagatatcagcatcgattgtgatgcaggttct 299
|||||||||||| |||||||| ||||| |||||||||||
Sbjct: 19208396 cagtcatcagatttcagcatctattgtcatgcaggttct 19208358
Score = 83.8 bits (42), Expect = 6e-13
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 293 aggttctttgccatgttcttccatcacttgaaaagattcgcaaggaaggattagacgggc 352
||||||| || ||||||||||||||||||||||| | || |||||||| ||||| || |
Sbjct: 19208138 aggttctctgtcatgttcttccatcacttgaaaaactacgaaaggaagggttagatggac 19208079
Query: 353 atgagaagatcaaaagctatat 374
|||||||||||||| |||||||
Sbjct: 19208078 atgagaagatcaaaggctatat 19208057
Score = 83.8 bits (42), Expect = 6e-13
Identities = 78/90 (86%)
Strand = Plus / Minus
Query: 376 tggtggctatcactgggttttgcaattgtggctgcttgtactgtgtcatgctattcgctg 435
|||||||| || |||||||||||| ||||||| |||| ||| ||||||||||| || |||
Sbjct: 19207943 tggtggctgtcgctgggttttgcacttgtggcggcttttacagtgtcatgctactcactg 19207884
Query: 436 cagtactccatatatgcagcaagttacagg 465
|| || || |||||||| ||||||||||||
Sbjct: 19207883 caatattctatatatgctgcaagttacagg 19207854
Score = 60.0 bits (30), Expect = 8e-06
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 466 gttaagcatgtcatattaacaagctttctgcttgtcctcggtgcaatgtcaacgacttgg 525
||||||||||| || |||||||| || | ||||| || ||||||||| ||| ||| |||
Sbjct: 19207741 gttaagcatgtaatgataacaagccttttccttgttcttggtgcaatgacaatgacatgg 19207682
Query: 526 atctgtnncaccataacggaatctggctttgg 557
|||||| ||| ||| |||||||||| |||||
Sbjct: 19207681 atctgtgacactatatcggaatctggatttgg 19207650
>dbj|AP003786.2 | Homo sapiens genomic DNA, chromosome 8q23, clone:KB1018C4, complete
sequence
Length = 174667
Score = 40.1 bits (20), Expect = 7.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 291 gcaggttctttgccatgttc 310
||||||||||||||||||||
Sbjct: 2336 gcaggttctttgccatgttc 2317
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,601,921
Number of Sequences: 3902068
Number of extensions: 4601921
Number of successful extensions: 90124
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89932
Number of HSP's gapped (non-prelim): 192
length of query: 580
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 557
effective length of database: 17,143,297,704
effective search space: 9548816821128
effective search space used: 9548816821128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)