ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal21h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_475203.1| Oryza sativa (japonica cultivar-group), predic... 559 e-156
2dbj|AK067298.1| Oryza sativa (japonica cultivar-group) cDNA clon... 559 e-156
3gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome... 232 1e-57
4gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome... 232 1e-57
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 232 1e-57
6emb|BX820289.1|CNS0A8QZ Arabidopsis thaliana Full-length cDNA Co... 58 3e-05
7ref|NM_128710.2| Arabidopsis thaliana EMB2289; protein transloca... 48 0.032
8ref|XM_368718.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 44 0.50
9ref|XM_587644.2| PREDICTED: Bos taurus similar to PR domain cont... 44 0.50
10ref|XM_865466.1| PREDICTED: Bos taurus similar to PR domain cont... 44 0.50
11gb|AC083799.17| Homo sapiens 3 BAC RP11-332M2 (Roswell Park Canc... 44 0.50
12gb|AC113204.7| Mus musculus chromosome 12, clone RP23-312J1, com... 42 2.0
13dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
14gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
15emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa... 42 2.0
16gb|AC110980.6| Rattus norvegicus 4 BAC CH230-94D15 (Children's H... 40 7.9
17emb|AL139041.17| Human DNA sequence from clone RP11-408O19 on ch... 40 7.9
18gb|AC159882.2| Mus musculus BAC clone RP24-480A4 from chromosome... 40 7.9
19emb|AL663083.5| Mouse DNA sequence from clone RP23-280G3 on chro... 40 7.9
20dbj|AB210222.1| Setaria italica GBSS1 gene, transposable element... 40 7.9
21dbj|AB210215.1| Setaria italica GBSS1 gene, transposable element... 40 7.9
22dbj|AB210214.1| Setaria italica GBSS1 gene, transposable element... 40 7.9
23gb|AC011118.13| Homo sapiens chromosome 8, clone RP11-163D8, com... 40 7.9
24gb|AC104358.4| Homo sapiens chromosome 8, clone RP11-151L10, com... 40 7.9
25dbj|AK147615.1| Mus musculus adult male brain UNDEFINED_CELL_LIN... 40 7.9
26dbj|AP002089.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 7.9
27dbj|AP005622.3| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 7.9
28gb|AC134918.5| Mus musculus BAC clone RP23-71G16 from 3, complet... 40 7.9
29dbj|AP003786.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 7.9

>ref|XM_475203.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1341

 Score =  559 bits (282), Expect = e-156
 Identities = 503/576 (87%), Gaps = 1/576 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   caggttcctggcacctggcgcggcttggggccgtggcggagggcgcggcggaggccttct 64
           ||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||  |||
Sbjct: 282 caggttcctgg-acctggcgcggctgggggccgtggcggagagcgcggcggaggcgctct 340

                                                                       
Query: 65  tccgcagcgaaatacggcggcggcttgccgtcacggccgtgctcatcgtgctcagccgcg 124
           |||||||||| || || |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 341 tccgcagcgagattcgccggcggctggccgtcacggccgtgctcatcctgctcagccgcg 400

                                                                       
Query: 125 tcggctacttcgtgccgcttcctgggttcgaccgccgcctcatccccgactcctatctca 184
           ||||||||||||| |||||||| ||||||||||| || ||||||||||| ||||| ||||
Sbjct: 401 tcggctacttcgtcccgcttcccgggttcgaccgacggctcatccccgattcctacctca 460

                                                                       
Query: 185 gcttcgccccgctccctgcagatgacctcgttgattttgcttctgaactgaagctatcat 244
           |||| || || || |||||||||||||||| ||||||| | || ||| ||||||| ||||
Sbjct: 461 gctttgcaccccttcctgcagatgacctcggtgatttttcatccgaattgaagctgtcat 520

                                                                       
Query: 245 ttttccagctgggaatcagtcatcagatatcagcatcgattgtgatgcaggttctttgcc 304
           |||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||| || |
Sbjct: 521 ttttccagctcggaatcagtcatcagatttcagcatctattgtcatgcaggttctctgtc 580

                                                                       
Query: 305 atgttcttccatcacttgaaaagattcgcaaggaaggattagacgggcatgagaagatca 364
           ||||||||||||||||||||||  | || |||||||| ||||| || |||||||||||||
Sbjct: 581 atgttcttccatcacttgaaaaactacgaaaggaagggttagatggacatgagaagatca 640

                                                                       
Query: 365 aaagctatatatggtggctatcactgggttttgcaattgtggctgcttgtactgtgtcat 424
           || ||||||| |||||||| || |||||||||||| ||||||| |||| ||| |||||||
Sbjct: 641 aaggctatatttggtggctgtcgctgggttttgcacttgtggcggcttttacagtgtcat 700

                                                                       
Query: 425 gctattcgctgcagtactccatatatgcagcaagttacagggttaagcatgtcatattaa 484
           |||| || ||||| || || |||||||| ||||||||||| ||||||||||| ||  |||
Sbjct: 701 gctactcactgcaatattctatatatgctgcaagttacagagttaagcatgtaatgataa 760

                                                                       
Query: 485 caagctttctgcttgtcctcggtgcaatgtcaacgacttggatctgtnncaccataacgg 544
           ||||| || | ||||| || ||||||||| ||| ||| |||||||||  ||| ||| |||
Sbjct: 761 caagccttttccttgttcttggtgcaatgacaatgacatggatctgtgacactatatcgg 820

                                               
Query: 545 aatctggctttgggcatggctcatctttgattatct 580
           ||||||| ||||| |||||||| || ||||||||||
Sbjct: 821 aatctggatttggacatggctcttccttgattatct 856



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>dbj|AK067298.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106K06, full
           insert sequence
          Length = 2452

 Score =  559 bits (282), Expect = e-156
 Identities = 503/576 (87%), Gaps = 1/576 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   caggttcctggcacctggcgcggcttggggccgtggcggagggcgcggcggaggccttct 64
           ||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||  |||
Sbjct: 356 caggttcctgg-acctggcgcggctgggggccgtggcggagagcgcggcggaggcgctct 414

                                                                       
Query: 65  tccgcagcgaaatacggcggcggcttgccgtcacggccgtgctcatcgtgctcagccgcg 124
           |||||||||| || || |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 415 tccgcagcgagattcgccggcggctggccgtcacggccgtgctcatcctgctcagccgcg 474

                                                                       
Query: 125 tcggctacttcgtgccgcttcctgggttcgaccgccgcctcatccccgactcctatctca 184
           ||||||||||||| |||||||| ||||||||||| || ||||||||||| ||||| ||||
Sbjct: 475 tcggctacttcgtcccgcttcccgggttcgaccgacggctcatccccgattcctacctca 534

                                                                       
Query: 185 gcttcgccccgctccctgcagatgacctcgttgattttgcttctgaactgaagctatcat 244
           |||| || || || |||||||||||||||| ||||||| | || ||| ||||||| ||||
Sbjct: 535 gctttgcaccccttcctgcagatgacctcggtgatttttcatccgaattgaagctgtcat 594

                                                                       
Query: 245 ttttccagctgggaatcagtcatcagatatcagcatcgattgtgatgcaggttctttgcc 304
           |||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||| || |
Sbjct: 595 ttttccagctcggaatcagtcatcagatttcagcatctattgtcatgcaggttctctgtc 654

                                                                       
Query: 305 atgttcttccatcacttgaaaagattcgcaaggaaggattagacgggcatgagaagatca 364
           ||||||||||||||||||||||  | || |||||||| ||||| || |||||||||||||
Sbjct: 655 atgttcttccatcacttgaaaaactacgaaaggaagggttagatggacatgagaagatca 714

                                                                       
Query: 365 aaagctatatatggtggctatcactgggttttgcaattgtggctgcttgtactgtgtcat 424
           || ||||||| |||||||| || |||||||||||| ||||||| |||| ||| |||||||
Sbjct: 715 aaggctatatttggtggctgtcgctgggttttgcacttgtggcggcttttacagtgtcat 774

                                                                       
Query: 425 gctattcgctgcagtactccatatatgcagcaagttacagggttaagcatgtcatattaa 484
           |||| || ||||| || || |||||||| ||||||||||| ||||||||||| ||  |||
Sbjct: 775 gctactcactgcaatattctatatatgctgcaagttacagagttaagcatgtaatgataa 834

                                                                       
Query: 485 caagctttctgcttgtcctcggtgcaatgtcaacgacttggatctgtnncaccataacgg 544
           ||||| || | ||||| || ||||||||| ||| ||| |||||||||  ||| ||| |||
Sbjct: 835 caagccttttccttgttcttggtgcaatgacaatgacatggatctgtgacactatatcgg 894

                                               
Query: 545 aatctggctttgggcatggctcatctttgattatct 580
           ||||||| ||||| |||||||| || ||||||||||
Sbjct: 895 aatctggatttggacatggctcttccttgattatct 930



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>gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0605G01,
             complete sequence
          Length = 146303

 Score =  232 bits (117), Expect = 1e-57
 Identities = 181/201 (90%), Gaps = 1/201 (0%)
 Strand = Plus / Minus

                                                                         
Query: 5     caggttcctggcacctggcgcggcttggggccgtggcggagggcgcggcggaggccttct 64
             ||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||  |||
Sbjct: 12862 caggttcctgg-acctggcgcggctgggggccgtggcggagagcgcggcggaggcgctct 12804

                                                                         
Query: 65    tccgcagcgaaatacggcggcggcttgccgtcacggccgtgctcatcgtgctcagccgcg 124
             |||||||||| || || |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 12803 tccgcagcgagattcgccggcggctggccgtcacggccgtgctcatcctgctcagccgcg 12744

                                                                         
Query: 125   tcggctacttcgtgccgcttcctgggttcgaccgccgcctcatccccgactcctatctca 184
             ||||||||||||| |||||||| ||||||||||| || ||||||||||| ||||| ||||
Sbjct: 12743 tcggctacttcgtcccgcttcccgggttcgaccgacggctcatccccgattcctacctca 12684

                                  
Query: 185   gcttcgccccgctccctgcag 205
             |||| || || || |||||||
Sbjct: 12683 gctttgcaccccttcctgcag 12663



 Score =  117 bits (59), Expect = 4e-23
 Identities = 89/99 (89%)
 Strand = Plus / Minus

                                                                         
Query: 201   tgcagatgacctcgttgattttgcttctgaactgaagctatcatttttccagctgggaat 260
             |||||||||||||| ||||||| | || ||| ||||||| |||||||||||||| |||||
Sbjct: 12532 tgcagatgacctcggtgatttttcatccgaattgaagctgtcatttttccagctcggaat 12473

                                                    
Query: 261   cagtcatcagatatcagcatcgattgtgatgcaggttct 299
             |||||||||||| |||||||| ||||| |||||||||||
Sbjct: 12472 cagtcatcagatttcagcatctattgtcatgcaggttct 12434



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                         
Query: 293   aggttctttgccatgttcttccatcacttgaaaagattcgcaaggaaggattagacgggc 352
             ||||||| || |||||||||||||||||||||||  | || |||||||| ||||| || |
Sbjct: 12214 aggttctctgtcatgttcttccatcacttgaaaaactacgaaaggaagggttagatggac 12155

                                   
Query: 353   atgagaagatcaaaagctatat 374
             |||||||||||||| |||||||
Sbjct: 12154 atgagaagatcaaaggctatat 12133



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 78/90 (86%)
 Strand = Plus / Minus

                                                                         
Query: 376   tggtggctatcactgggttttgcaattgtggctgcttgtactgtgtcatgctattcgctg 435
             |||||||| || |||||||||||| ||||||| |||| ||| ||||||||||| || |||
Sbjct: 12019 tggtggctgtcgctgggttttgcacttgtggcggcttttacagtgtcatgctactcactg 11960

                                           
Query: 436   cagtactccatatatgcagcaagttacagg 465
             || || || |||||||| ||||||||||||
Sbjct: 11959 caatattctatatatgctgcaagttacagg 11930



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                         
Query: 466   gttaagcatgtcatattaacaagctttctgcttgtcctcggtgcaatgtcaacgacttgg 525
             ||||||||||| ||  |||||||| || | ||||| || ||||||||| ||| ||| |||
Sbjct: 11817 gttaagcatgtaatgataacaagccttttccttgttcttggtgcaatgacaatgacatgg 11758

                                             
Query: 526   atctgtnncaccataacggaatctggctttgg 557
             ||||||  ||| ||| |||||||||| |||||
Sbjct: 11757 atctgtgacactatatcggaatctggatttgg 11726



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>gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0092G21,
              complete sequence
          Length = 151267

 Score =  232 bits (117), Expect = 1e-57
 Identities = 181/201 (90%), Gaps = 1/201 (0%)
 Strand = Plus / Minus

                                                                          
Query: 5      caggttcctggcacctggcgcggcttggggccgtggcggagggcgcggcggaggccttct 64
              ||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||  |||
Sbjct: 130684 caggttcctgg-acctggcgcggctgggggccgtggcggagagcgcggcggaggcgctct 130626

                                                                          
Query: 65     tccgcagcgaaatacggcggcggcttgccgtcacggccgtgctcatcgtgctcagccgcg 124
              |||||||||| || || |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 130625 tccgcagcgagattcgccggcggctggccgtcacggccgtgctcatcctgctcagccgcg 130566

                                                                          
Query: 125    tcggctacttcgtgccgcttcctgggttcgaccgccgcctcatccccgactcctatctca 184
              ||||||||||||| |||||||| ||||||||||| || ||||||||||| ||||| ||||
Sbjct: 130565 tcggctacttcgtcccgcttcccgggttcgaccgacggctcatccccgattcctacctca 130506

                                   
Query: 185    gcttcgccccgctccctgcag 205
              |||| || || || |||||||
Sbjct: 130505 gctttgcaccccttcctgcag 130485



 Score =  117 bits (59), Expect = 4e-23
 Identities = 89/99 (89%)
 Strand = Plus / Minus

                                                                          
Query: 201    tgcagatgacctcgttgattttgcttctgaactgaagctatcatttttccagctgggaat 260
              |||||||||||||| ||||||| | || ||| ||||||| |||||||||||||| |||||
Sbjct: 130354 tgcagatgacctcggtgatttttcatccgaattgaagctgtcatttttccagctcggaat 130295

                                                     
Query: 261    cagtcatcagatatcagcatcgattgtgatgcaggttct 299
              |||||||||||| |||||||| ||||| |||||||||||
Sbjct: 130294 cagtcatcagatttcagcatctattgtcatgcaggttct 130256



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                          
Query: 293    aggttctttgccatgttcttccatcacttgaaaagattcgcaaggaaggattagacgggc 352
              ||||||| || |||||||||||||||||||||||  | || |||||||| ||||| || |
Sbjct: 130036 aggttctctgtcatgttcttccatcacttgaaaaactacgaaaggaagggttagatggac 129977

                                    
Query: 353    atgagaagatcaaaagctatat 374
              |||||||||||||| |||||||
Sbjct: 129976 atgagaagatcaaaggctatat 129955



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 78/90 (86%)
 Strand = Plus / Minus

                                                                          
Query: 376    tggtggctatcactgggttttgcaattgtggctgcttgtactgtgtcatgctattcgctg 435
              |||||||| || |||||||||||| ||||||| |||| ||| ||||||||||| || |||
Sbjct: 129841 tggtggctgtcgctgggttttgcacttgtggcggcttttacagtgtcatgctactcactg 129782

                                            
Query: 436    cagtactccatatatgcagcaagttacagg 465
              || || || |||||||| ||||||||||||
Sbjct: 129781 caatattctatatatgctgcaagttacagg 129752



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                          
Query: 466    gttaagcatgtcatattaacaagctttctgcttgtcctcggtgcaatgtcaacgacttgg 525
              ||||||||||| ||  |||||||| || | ||||| || ||||||||| ||| ||| |||
Sbjct: 129639 gttaagcatgtaatgataacaagccttttccttgttcttggtgcaatgacaatgacatgg 129580

                                              
Query: 526    atctgtnncaccataacggaatctggctttgg 557
              ||||||  ||| ||| |||||||||| |||||
Sbjct: 129579 atctgtgacactatatcggaatctggatttgg 129548



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  232 bits (117), Expect = 1e-57
 Identities = 181/201 (90%), Gaps = 1/201 (0%)
 Strand = Plus / Minus

                                                                            
Query: 5        caggttcctggcacctggcgcggcttggggccgtggcggagggcgcggcggaggccttct 64
                ||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||  |||
Sbjct: 19208786 caggttcctgg-acctggcgcggctgggggccgtggcggagagcgcggcggaggcgctct 19208728

                                                                            
Query: 65       tccgcagcgaaatacggcggcggcttgccgtcacggccgtgctcatcgtgctcagccgcg 124
                |||||||||| || || |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 19208727 tccgcagcgagattcgccggcggctggccgtcacggccgtgctcatcctgctcagccgcg 19208668

                                                                            
Query: 125      tcggctacttcgtgccgcttcctgggttcgaccgccgcctcatccccgactcctatctca 184
                ||||||||||||| |||||||| ||||||||||| || ||||||||||| ||||| ||||
Sbjct: 19208667 tcggctacttcgtcccgcttcccgggttcgaccgacggctcatccccgattcctacctca 19208608

                                     
Query: 185      gcttcgccccgctccctgcag 205
                |||| || || || |||||||
Sbjct: 19208607 gctttgcaccccttcctgcag 19208587



 Score =  117 bits (59), Expect = 4e-23
 Identities = 89/99 (89%)
 Strand = Plus / Minus

                                                                            
Query: 201      tgcagatgacctcgttgattttgcttctgaactgaagctatcatttttccagctgggaat 260
                |||||||||||||| ||||||| | || ||| ||||||| |||||||||||||| |||||
Sbjct: 19208456 tgcagatgacctcggtgatttttcatccgaattgaagctgtcatttttccagctcggaat 19208397

                                                       
Query: 261      cagtcatcagatatcagcatcgattgtgatgcaggttct 299
                |||||||||||| |||||||| ||||| |||||||||||
Sbjct: 19208396 cagtcatcagatttcagcatctattgtcatgcaggttct 19208358



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                            
Query: 293      aggttctttgccatgttcttccatcacttgaaaagattcgcaaggaaggattagacgggc 352
                ||||||| || |||||||||||||||||||||||  | || |||||||| ||||| || |
Sbjct: 19208138 aggttctctgtcatgttcttccatcacttgaaaaactacgaaaggaagggttagatggac 19208079

                                      
Query: 353      atgagaagatcaaaagctatat 374
                |||||||||||||| |||||||
Sbjct: 19208078 atgagaagatcaaaggctatat 19208057



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 78/90 (86%)
 Strand = Plus / Minus

                                                                            
Query: 376      tggtggctatcactgggttttgcaattgtggctgcttgtactgtgtcatgctattcgctg 435
                |||||||| || |||||||||||| ||||||| |||| ||| ||||||||||| || |||
Sbjct: 19207943 tggtggctgtcgctgggttttgcacttgtggcggcttttacagtgtcatgctactcactg 19207884

                                              
Query: 436      cagtactccatatatgcagcaagttacagg 465
                || || || |||||||| ||||||||||||
Sbjct: 19207883 caatattctatatatgctgcaagttacagg 19207854



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                            
Query: 466      gttaagcatgtcatattaacaagctttctgcttgtcctcggtgcaatgtcaacgacttgg 525
                ||||||||||| ||  |||||||| || | ||||| || ||||||||| ||| ||| |||
Sbjct: 19207741 gttaagcatgtaatgataacaagccttttccttgttcttggtgcaatgacaatgacatgg 19207682

                                                
Query: 526      atctgtnncaccataacggaatctggctttgg 557
                ||||||  ||| ||| |||||||||| |||||
Sbjct: 19207681 atctgtgacactatatcggaatctggatttgg 19207650



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>emb|BX820289.1|CNS0A8QZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH19ZD10 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1800

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 334 aaggaaggattagacgggcatgagaagatcaaaagctatatatggtggctatc 386
           |||||||| ||||| || || ||||||||||| || |||||||||||||||||
Sbjct: 665 aaggaaggcttagatggtcacgagaagatcaagagttatatatggtggctatc 717



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 544 gaatctggctttgggcatggctcatctttgattat 578
           |||||||| ||||| |||||||||||| |||||||
Sbjct: 875 gaatctggatttggtcatggctcatctctgattat 909



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>ref|NM_128710.2| Arabidopsis thaliana EMB2289; protein translocase AT2G31530
           (EMB2289) mRNA, complete cds
          Length = 1827

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 61/74 (82%)
 Strand = Plus / Plus

                                                                       
Query: 505 ggtgcaatgtcaacgacttggatctgtnncaccataacggaatctggctttgggcatggc 564
           ||||||||| ||| ||| ||| |||||   || ||| | |||||||| ||||| ||||||
Sbjct: 826 ggtgcaatgacaatgacgtggctctgtgatacaatatcagaatctggatttggtcatggc 885

                         
Query: 565 tcatctttgattat 578
           |||||| |||||||
Sbjct: 886 tcatctctgattat 899



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>ref|XM_368718.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
           (MG00526.4) partial mRNA
          Length = 495

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 489 ctttctgcttgtcctcggtgca 510
           ||||||||||||||||||||||
Sbjct: 309 ctttctgcttgtcctcggtgca 330



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>ref|XM_587644.2| PREDICTED: Bos taurus similar to PR domain containing 13,
           transcript variant 1 (LOC510505), mRNA
          Length = 2124

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 36  cgtggcggagggcgcggcggaggcct 61
           ||||||||||||||||| ||||||||
Sbjct: 714 cgtggcggagggcgcggaggaggcct 689



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>ref|XM_865466.1| PREDICTED: Bos taurus similar to PR domain containing 13,
           transcript variant 2 (LOC510505), mRNA
          Length = 2163

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 36  cgtggcggagggcgcggcggaggcct 61
           ||||||||||||||||| ||||||||
Sbjct: 753 cgtggcggagggcgcggaggaggcct 728



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>gb|AC083799.17| Homo sapiens 3 BAC RP11-332M2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 184129

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 260   tcagtcatcagatatcagcatc 281
             ||||||||||||||||||||||
Sbjct: 16416 tcagtcatcagatatcagcatc 16395



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>gb|AC113204.7| Mus musculus chromosome 12, clone RP23-312J1, complete sequence
          Length = 207293

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 371    atatatggtggctatcactgg 391
              |||||||||||||||||||||
Sbjct: 176897 atatatggtggctatcactgg 176877



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
             complete sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 39    ggcggagggcgcggcggaggc 59
             |||||||||||||||||||||
Sbjct: 12003 ggcggagggcgcggcggaggc 12023



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 39    ggcggagggcgcggcggaggc 59
             |||||||||||||||||||||
Sbjct: 12003 ggcggagggcgcggcggaggc 12023



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>emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 147503

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 39    ggcggagggcgcggcggaggc 59
             |||||||||||||||||||||
Sbjct: 12003 ggcggagggcgcggcggaggc 12023



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>gb|AC110980.6| Rattus norvegicus 4 BAC CH230-94D15 (Children's Hospital Oakland
            Research Institute) complete sequence
          Length = 87812

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 552  ctttgggcatggctcatctt 571
            ||||||||||||||||||||
Sbjct: 2073 ctttgggcatggctcatctt 2054



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>emb|AL139041.17| Human DNA sequence from clone RP11-408O19 on chromosome 9p11.2-21
              Contains the 3' end of the gene for a novel protein similar
              to sorting nexin 7 (SNX7), the TSCOT gene for thymic
              stromal co-transporter, a pseudogene similar to Mus
              musculus major urinary proteins and a CpG island, complete
              sequence
          Length = 141659

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 411    ttgtactgtgtcatgctatt 430
              ||||||||||||||||||||
Sbjct: 127570 ttgtactgtgtcatgctatt 127589



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>gb|AC159882.2| Mus musculus BAC clone RP24-480A4 from chromosome 9, complete sequence
          Length = 178827

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 446    tatatgcagcaagttacagg 465
              ||||||||||||||||||||
Sbjct: 117258 tatatgcagcaagttacagg 117277



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>emb|AL663083.5| Mouse DNA sequence from clone RP23-280G3 on chromosome 11 Contains
            the 3' end of the gene for a novel protein and the 3' end
            of a novel gene, complete sequence
          Length = 191191

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 284  ttgtgatgcaggttctttgc 303
            ||||||||||||||||||||
Sbjct: 2384 ttgtgatgcaggttctttgc 2403



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>dbj|AB210222.1| Setaria italica GBSS1 gene, transposable element TSI-3 in intron 1
          Length = 3655

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 39  ggcggagggcgcggcggagg 58
           ||||||||||||||||||||
Sbjct: 823 ggcggagggcgcggcggagg 804



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>dbj|AB210215.1| Setaria italica GBSS1 gene, transposable element TSI-2 in intron 1
          Length = 6078

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 39  ggcggagggcgcggcggagg 58
           ||||||||||||||||||||
Sbjct: 821 ggcggagggcgcggcggagg 802



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>dbj|AB210214.1| Setaria italica GBSS1 gene, transposable element TSI-3 and
            transposable element TSI-6 in intron 1
          Length = 4881

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 39   ggcggagggcgcggcggagg 58
            ||||||||||||||||||||
Sbjct: 2050 ggcggagggcgcggcggagg 2031



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>gb|AC011118.13| Homo sapiens chromosome 8, clone RP11-163D8, complete sequence
          Length = 135968

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 218   attttgcttctgaactgaagctat 241
             |||||||||||||| |||||||||
Sbjct: 15479 attttgcttctgaaatgaagctat 15502



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>gb|AC104358.4| Homo sapiens chromosome 8, clone RP11-151L10, complete sequence
          Length = 174055

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 291    gcaggttctttgccatgttc 310
              ||||||||||||||||||||
Sbjct: 157670 gcaggttctttgccatgttc 157651



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>dbj|AK147615.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN
            full-length enriched library, clone:M5C1091A08
            product:unclassifiable, full insert sequence
          Length = 6842

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 296  ttctttgccatgttcttcca 315
            ||||||||||||||||||||
Sbjct: 5392 ttctttgccatgttcttcca 5373



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>dbj|AP002089.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1100B9
          Length = 151959

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 291   gcaggttctttgccatgttc 310
             ||||||||||||||||||||
Sbjct: 72179 gcaggttctttgccatgttc 72160



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>dbj|AP005622.3| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1016F12, complete
              sequence
          Length = 200738

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 291    gcaggttctttgccatgttc 310
              ||||||||||||||||||||
Sbjct: 146808 gcaggttctttgccatgttc 146789



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>gb|AC134918.5| Mus musculus BAC clone RP23-71G16 from 3, complete sequence
          Length = 191764

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   ttctttgccatgttcttcca 315
             ||||||||||||||||||||
Sbjct: 75384 ttctttgccatgttcttcca 75403



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>dbj|AP003786.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1018C4, complete
            sequence
          Length = 174667

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 291  gcaggttctttgccatgttc 310
            ||||||||||||||||||||
Sbjct: 2336 gcaggttctttgccatgttc 2317


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,601,921
Number of Sequences: 3902068
Number of extensions: 4601921
Number of successful extensions: 90124
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89932
Number of HSP's gapped (non-prelim): 192
length of query: 580
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 557
effective length of database: 17,143,297,704
effective search space: 9548816821128
effective search space used: 9548816821128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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