ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal21f07 |
|---|---|
| Clone Library Name | barley_pub |
>YHS4_CAEEL (O18303) Hypothetical protein ZK849.4 in chromosome I| Length = 602 Score = 33.1 bits (74), Expect = 0.16 Identities = 27/83 (32%), Positives = 34/83 (40%) Frame = -3 Query: 384 RPHEAPVEVPAALAGPDERQRAPERLLQLLHGVPRLRLLHEVRGVELVHQVPDHPGAARE 205 RP +P +P AL P+E P L PR L+HEV G + P A Sbjct: 482 RPPPSPPALPPALPNPNEPPPPPPPAEALRADQPRHSLIHEV-GAQA------DPAEANG 534 Query: 204 LQAGGSVPPDRLRRVGDHLDEPV 136 QA V P+ R +H PV Sbjct: 535 AQALSPVLPNPNERADEHGHSPV 557
>Y1897_METTH (O27919) UPF0244 protein MTH1897| Length = 182 Score = 31.2 bits (69), Expect = 0.62 Identities = 25/74 (33%), Positives = 34/74 (45%) Frame = -3 Query: 345 AGPDERQRAPERLLQLLHGVPRLRLLHEVRGVELVHQVPDHPGAARELQAGGSVPPDRLR 166 +G + RA E +L L++G EVRGVE+ VPD P E G +R R Sbjct: 14 SGNPVKVRATENVLGLIYGNV------EVRGVEVESGVPDQPVGLEETVRGA---VNRAR 64 Query: 165 RVGDHLDEPVGVHS 124 R + VG+ S Sbjct: 65 RAFRDCELSVGIES 78
>FDHE_PSEAE (Q9HV00) Protein fdhE homolog| Length = 309 Score = 30.8 bits (68), Expect = 0.81 Identities = 29/82 (35%), Positives = 36/82 (43%), Gaps = 3/82 (3%) Frame = -3 Query: 387 PRPHEAPVEVPAALAGP--DERQRAPERLLQLLHGVPRLRLLHEVRGV-ELVHQVPDHPG 217 P EA +P L P D R ERLLQL G P L V G+ L + D+P Sbjct: 8 PGQIEAAANIPPHLHQPSRDLFARRGERLLQLAEGHPMGDYLRLVAGLCRLQQALLDNPP 67 Query: 216 AARELQAGGSVPPDRLRRVGDH 151 A L P+RLR+ +H Sbjct: 68 ALAPLD------PERLRKSREH 83
>GLMM_GLUOX (Q5FQB4) Phosphoglucosamine mutase (EC 5.4.2.10)| Length = 452 Score = 30.4 bits (67), Expect = 1.1 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Frame = -3 Query: 381 PHEAPVEVPAALAGPDERQRAPERLLQLLHGV-PRLRLLHEVRGVELVHQVPDH 223 P +P ++ AA A DER RL+ G P +R++ E + LVH+V DH Sbjct: 389 PMSSP-DLAAAKAWADERLAGSGRLVLRASGTEPLIRVMAEAQDEALVHEVVDH 441
>EFS_MOUSE (Q64355) Embryonal Fyn-associated substrate (SRC-interacting| protein) (Signal-integrating protein) Length = 560 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/25 (56%), Positives = 16/25 (64%) Frame = -3 Query: 387 PRPHEAPVEVPAALAGPDERQRAPE 313 PR EAP +VP AL P E +R PE Sbjct: 181 PREDEAPYDVPLALKPPAELERDPE 205
>SDC3_RAT (P33671) Syndecan-3 precursor (SYND3) (N-syndecan) (Neuroglycan)| Length = 442 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = +3 Query: 6 RPPPPLGTLAGSAPPRLILNQTKIRNGSS 92 +P PPLGTL A P L L+ I +GSS Sbjct: 342 KPSPPLGTLPKGARPGLGLHDNAIDSGSS 370
>SDC3_MOUSE (Q64519) Syndecan-3 precursor (SYND3)| Length = 442 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = +3 Query: 6 RPPPPLGTLAGSAPPRLILNQTKIRNGSS 92 +P PPLGTL A P L L+ I +GSS Sbjct: 342 KPSPPLGTLPKGARPGLGLHDNAIDSGSS 370
>MTRA_METTH (O27227) Tetrahydromethanopterin S-methyltransferase subunit A (EC| 2.1.1.86) (N5-methyltetrahydromethanopterin--coenzyme M methyltransferase subunit A) Length = 237 Score = 29.6 bits (65), Expect = 1.8 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 11/76 (14%) Frame = -3 Query: 375 EAPVEVPAALAGPDERQR-APERLLQLLHGVPRLRLL----HEVRG------VELVHQVP 229 + PVE AA+AGP + + E+++ L P +R L EV+G +E +HQ Sbjct: 37 DVPVEAGAAIAGPCKTENLGIEKMIANLISNPNIRFLILCGSEVQGHITGQSIEALHQNG 96 Query: 228 DHPGAARELQAGGSVP 181 P + A G++P Sbjct: 97 VDPDKRNIIGATGAIP 112
>MYSS_CYPCA (Q90339) Myosin heavy chain, fast skeletal muscle| Length = 1935 Score = 29.3 bits (64), Expect = 2.4 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 7/77 (9%) Frame = +1 Query: 148 KMIADAA---QTVRRNRATCLQLARRAR----MIGDLMHQLHAAHLMQQPETRNPMEQLE 306 K I DAA + +++ + T L R + + DL H+L A + + +++LE Sbjct: 1758 KAITDAAMMAEELKKEQDTSAHLERMKKNLEVTVKDLQHRLDEAESLAMKGGKKQLQKLE 1817 Query: 307 ETLRRALSLVRSCQRRG 357 +R + V + QRRG Sbjct: 1818 SRVRELEAEVEAEQRRG 1834
>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3664 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 5/55 (9%) Frame = -3 Query: 387 PRPHEAPVEVPAALAGPDERQRAPERLLQL-----LHGVPRLRLLHEVRGVELVH 238 P P APV VP L P R+L + L G+P + GV++VH Sbjct: 3243 PTPTPAPVPVPVPLPAPAPAPHGEARILTVTPSNQLQGLPLTPPVVVTHGVQIVH 3297
>MTRA_METTM (P80184) Tetrahydromethanopterin S-methyltransferase subunit A (EC| 2.1.1.86) (N5-methyltetrahydromethanopterin--coenzyme M methyltransferase subunit A) Length = 237 Score = 29.3 bits (64), Expect = 2.4 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 11/76 (14%) Frame = -3 Query: 375 EAPVEVPAALAGPDERQR-APERLLQLLHGVPRLRLL----HEVRG------VELVHQVP 229 + PVE AA+AGP + + E+++ L P +R L EV+G +E +HQ Sbjct: 37 DIPVEAGAAIAGPCKTENLGIEKMIANLISNPNIRFLILCGSEVQGHITGQSIEALHQNG 96 Query: 228 DHPGAARELQAGGSVP 181 P + A G++P Sbjct: 97 VDPDKRNIIGATGAIP 112
>FOXGB_HUMAN (P55315) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) (HFK1) Length = 477 Score = 28.9 bits (63), Expect = 3.1 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 9/69 (13%) Frame = +3 Query: 9 PPPPLGTLAGSA--------PPRLILNQTKIRNGSSWSGRHGCAVCRSGRL-RAHQDDRR 161 PPPPL AG A P L+L T S + GC CR G L D++ Sbjct: 77 PPPPLAPQAGGAAQSNDEKGPQLLLLPPTDHHRPPSGAKAGGC--CRPGELGPVGPDEKE 134 Query: 162 RGADGPEEQ 188 +GA E+ Sbjct: 135 KGAGAGGEE 143
>MURC_WOLPM (P61683) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)| (UDP-N-acetylmuramoyl-L-alanine synthetase) Length = 498 Score = 28.9 bits (63), Expect = 3.1 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 10/66 (15%) Frame = -3 Query: 309 LLQLLHGVPRLRLLHEVRGVELVHQVPDHPG-------AARELQAG---GSVPPDRLRRV 160 LL+ R L+ +++GV+L+ HP AAR + G G + P R R+ Sbjct: 341 LLEFQGVARRFSLIADIKGVKLIEDYAHHPNEIYATLTAARSITKGKVIGIIEPLRFARI 400 Query: 159 GDHLDE 142 + DE Sbjct: 401 RNFFDE 406
>FMT_METCA (Q603G2) Methionyl-tRNA formyltransferase (EC 2.1.2.9)| Length = 308 Score = 28.9 bits (63), Expect = 3.1 Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 13/101 (12%) Frame = -3 Query: 378 HEAPVEVPAALAGPDERQR----APERLLQLLHG--VPRLRLLHEVRGVELVHQ--VPDH 223 H PV PA+L GP+ER+R P+ ++ + +G +P L G +H +P Sbjct: 55 HGLPVFQPASLKGPEERERLVALEPDLMVVVAYGLILPTPVLTVPRFGCVNIHASLLPRW 114 Query: 222 PGAA---RELQAGGSVPPDRLRRVGDHLD--EPVGVHSCKL 115 GAA R + AG L R+ LD +G SC + Sbjct: 115 RGAAPIQRAILAGDRETGVTLMRIEPRLDAGPMLGKRSCSI 155
>NOS_DROME (Q27571) Nitric-oxide synthase (EC 1.14.13.39) (dNOS)| Length = 1349 Score = 28.9 bits (63), Expect = 3.1 Identities = 21/62 (33%), Positives = 29/62 (46%) Frame = -3 Query: 240 HQVPDHPGAARELQAGGSVPPDRLRRVGDHLDEPVGVHSCKLRNHGGLTS*SHFLSWFGS 61 H+V DHPG A+ QA G +P + H + S +R G T+ S + GS Sbjct: 85 HEV-DHPGGAQGAQAAGGLPSSSGTPLRHHKRASISTASPPIRERRG-TNTSIVVELDGS 142 Query: 60 GS 55 GS Sbjct: 143 GS 144
>COBQ_BRUSU (Q8G005) Cobyric acid synthase| Length = 483 Score = 28.9 bits (63), Expect = 3.1 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 3/45 (6%) Frame = -3 Query: 261 VRGVELVHQVPDHPGAARELQAGGSVPPDRLR---RVGDHLDEPV 136 VR VE V + D P E+ G + PD R R+GDH D V Sbjct: 374 VRNVEAVSLLHDEPLEGYEIHIGRTSGPDMARPFARIGDHDDGAV 418
>COBQ_BRUME (Q8YHV6) Cobyric acid synthase| Length = 483 Score = 28.9 bits (63), Expect = 3.1 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 3/45 (6%) Frame = -3 Query: 261 VRGVELVHQVPDHPGAARELQAGGSVPPDRLR---RVGDHLDEPV 136 VR VE V + D P E+ G + PD R R+GDH D V Sbjct: 374 VRNVEAVSLLHDEPLEGYEIHIGRTSGPDMARPFARIGDHDDGAV 418
>AREA_PENRO (O13508) Nitrogen regulatory protein areA (Nitrogen regulator nmc)| Length = 860 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = -3 Query: 228 DHPGAARELQAGGSVPPDRLRRVGDHLDEPVGVHSCKLRNHGGLTS 91 DHP +A L G+V P R + H + P G+ + + + GL S Sbjct: 284 DHPPSAYALSGNGTVGPRRPQHHHTHSNIPYGLDTYGISENHGLNS 329
>JHD1_EMENI (Q5AW75) JmjC domain-containing histone demethylation protein 1 (EC| 1.14.11.-) Length = 1407 Score = 28.9 bits (63), Expect = 3.1 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 4/60 (6%) Frame = +3 Query: 15 PPLGTLAGSAPPRLILNQTKIRNGSSWSG----RHGCAVCRSGRLRAHQDDRRRGADGPE 182 PP T P K + S SG R C CR R+R H + GA G + Sbjct: 955 PPAATSGIPVPVMNEDTSQKHKTASRGSGLGPKRVACDACRKRRIRCHHKEENNGASGSQ 1014
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 28.5 bits (62), Expect = 4.0 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 1/88 (1%) Frame = -3 Query: 393 GVPRPHEAPVEVPAALAGPDERQRAPERLLQLLHGVPRLRLLHEVRGVELVHQVPD-HPG 217 G+P AP +PAA+ GP P +Q G+P + + RG Q+ D P Sbjct: 272 GIP----APGPIPAAVPGPGPGSLTPGGAMQPQVGMPVVGPVPLERG---QMQISDPRPP 324 Query: 216 AARELQAGGSVPPDRLRRVGDHLDEPVG 133 R G +PP L +GD ++P G Sbjct: 325 MPRGPMPSGGIPPRGL--LGDAPNDPRG 350
>IRS1_RAT (P35570) Insulin receptor substrate 1 (IRS-1) (pp185)| Length = 1235 Score = 28.5 bits (62), Expect = 4.0 Identities = 29/93 (31%), Positives = 35/93 (37%), Gaps = 18/93 (19%) Frame = -3 Query: 357 PAALAGPDERQRAPE-RLLQLLHGVPRLRL-----------------LHEVRGVELVHQV 232 P LAGP + +P R L LH PR E GVEL Sbjct: 905 PGYLAGPATSRSSPSVRCLPQLHPAPREETGSEEYMNMDLGPGRRATWQESGGVELGRVG 964 Query: 231 PDHPGAARELQAGGSVPPDRLRRVGDHLDEPVG 133 P PGAA + SVP R GD++ +G Sbjct: 965 PAPPGAASICRPTRSVPNSR----GDYMTMQIG 993
>CTL5_MACFA (Q95JW2) Choline transporter-like protein 5 (Solute carrier family| 44 member 5) Length = 717 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/38 (28%), Positives = 20/38 (52%) Frame = -1 Query: 272 CCMRCAAWSWCIRSPIILARRASCRQVALFLRTVCAAS 159 CC+RC WC+ + I R + +A++ R C ++ Sbjct: 553 CCLRCC--FWCLENAIKFLNRNAYIMIAIYGRNFCRSA 588
>CTL5_HUMAN (Q8NCS7) Choline transporter-like protein 5 (Solute carrier family| 44 member 5) Length = 719 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/38 (28%), Positives = 20/38 (52%) Frame = -1 Query: 272 CCMRCAAWSWCIRSPIILARRASCRQVALFLRTVCAAS 159 CC+RC WC+ + I R + +A++ R C ++ Sbjct: 553 CCLRCC--FWCLENAIKFLNRNAYIMIAIYGRNFCRSA 588
>TSTP_SHV21 (P18347) Transforming protein STP| Length = 164 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/54 (29%), Positives = 22/54 (40%) Frame = -3 Query: 222 PGAARELQAGGSVPPDRLRRVGDHLDEPVGVHSCKLRNHGGLTS*SHFLSWFGS 61 PG L +P R HL PVG+ + ++ GG S H + GS Sbjct: 67 PGRPTALSGAVGLPTPSGSRSSSHLSTPVGLSAVRVSGCGGAGSEEHVYAEVGS 120
>SYFB_IDILO (Q5QXL8) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 795 Score = 28.5 bits (62), Expect = 4.0 Identities = 21/66 (31%), Positives = 31/66 (46%) Frame = +1 Query: 184 NRATCLQLARRARMIGDLMHQLHAAHLMQQPETRNPMEQLEETLRRALSLVRSCQRRGYL 363 NR CL + AR +G ++++L PE+ +E+TL +LS C R YL Sbjct: 165 NRGDCLSIRGIAREVG-VLNRLDVT----VPESNEVTASIEDTLSISLSAAEQCPR--YL 217 Query: 364 YRCFMG 381 R G Sbjct: 218 GRVIKG 223
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 28.5 bits (62), Expect = 4.0 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 4/91 (4%) Frame = -3 Query: 393 GVPRPHEAPVEVPAALAGPDERQRAPERLLQLLHGVPRLRLLHEVRGVELVHQVP-DHPG 217 GVP AP ++PAA+ GP AP +Q G+P + RG QVP P Sbjct: 253 GVP----APGQIPAAVTGPGPGSLAPGGGMQAQVGMPGSGPVSMERG-----QVPMQDPR 303 Query: 216 AARELQAGGSVP---PDRLRRVGDHLDEPVG 133 AA + GS+P P +GD ++P G Sbjct: 304 AAMQ---RGSLPANVPTPRGLLGDAPNDPRG 331
>COIA1_HUMAN (P39060) Collagen alpha-1(XVIII) chain precursor [Contains:| Endostatin] Length = 1516 Score = 28.5 bits (62), Expect = 4.0 Identities = 23/78 (29%), Positives = 28/78 (35%), Gaps = 2/78 (2%) Frame = -3 Query: 375 EAPVEVPAALAGPDERQRAPERLLQLLHGVPRLRLLHEVRGVELVHQVPDHPGAARELQ- 199 E PV P ALAGP + L G+P H L P P R Sbjct: 146 ETPVG-PLALAGPSSTPQENGTTLWPSRGIPSSPGAHTTEAGTLPAPTPSPPSLGRPWAP 204 Query: 198 -AGGSVPPDRLRRVGDHL 148 G SVPP R+ + + Sbjct: 205 LTGPSVPPPSSERISEEV 222
>RAPG_BACSU (O32294) Response regulator aspartate phosphatase G (EC 3.1.-.-)| Length = 365 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = -3 Query: 336 DERQRAPERLLQLLHGVPRLRLLHEVRGVELVHQVPDHPGAAREL 202 D+ A LL+L H V LLHE RG H+ P H A ++ Sbjct: 45 DQEVLAYFSLLELRHKV----LLHEARGQGFQHEEPSHMNATSDM 85
>SIA8D_MOUSE (Q64692) CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase| (EC 2.4.99.-) (Alpha-2,8-sialyltransferase 8D) (ST8Sia IV) (Polysialyltransferase-1) Length = 359 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -3 Query: 306 LQLLHGVPRLRLLHEVRGVELVHQVP 229 LQ+ P LRL+H VRG L ++VP Sbjct: 249 LQVRTAYPSLRLIHAVRGYWLTNKVP 274
>IRS1_HUMAN (P35568) Insulin receptor substrate 1 (IRS-1)| Length = 1242 Score = 28.1 bits (61), Expect = 5.3 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Frame = -3 Query: 378 HEAP-VEVPAALA-GPDERQRAPERLLQLLHGVPRLRLLHEVRGVELVHQVPDHPGAARE 205 H +P V P+ L P E + E +++ G R E GVE+ P PGAA Sbjct: 916 HSSPSVRCPSQLQPAPREEETGTEEYMKMDLGPGRRAAWQESTGVEMGRLGPAPPGAASI 975 Query: 204 LQAGGSVPPDRLRRVGDHL 148 + +VP R GD++ Sbjct: 976 CRPTRAVPSSR----GDYM 990
>PACC_TRIRU (Q9C1A4) pH-response transcription factor pacC/RIM101| Length = 758 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%) Frame = -3 Query: 381 PHEAPVEVPA-----ALAGPDERQRAPERLLQLLHGVPRLRLLHEVR 256 PH +P P A AGPD+RQ A E+ V +RLL +R Sbjct: 584 PHRSPSSTPTPTATTAAAGPDDRQPAGEQ-----QWVENVRLLQRLR 625
>ZBT7B_HUMAN (O15156) Zinc finger and BTB domain-containing protein 7B (Zinc| finger protein 67 homolog) (Zfp-67) (Zinc finger protein Th-POK) (T-helper-inducing POZ/Kruppel-like factor) (Kruppel-related zinc finger protein cKrox) (hcKrox) (Zinc finger and Length = 539 Score = 28.1 bits (61), Expect = 5.3 Identities = 26/96 (27%), Positives = 32/96 (33%), Gaps = 6/96 (6%) Frame = -3 Query: 393 GVPRPHEAPVEVPAALAGPD------ERQRAPERLLQLLHGVPRLRLLHEVRGVELVHQV 232 GVP ++P +VP P R R P + G L+ EV V Sbjct: 173 GVPNGEDSPPQVPLPPPPPPPPRPVARRSRKPRKAFLQTKGARANHLVPEVP------TV 226 Query: 231 PDHPGAARELQAGGSVPPDRLRRVGDHLDEPVGVHS 124 P HP E + G V GD P G S Sbjct: 227 PAHPLTYEEEEVAGRVGSSGGSGPGDSYSPPTGTAS 262
>YTZ4_AGRVI (P70796) Hypothetical 31.6 kDa protein in TAR-I ttuC' 3'region| (ORFZ4) Length = 280 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/41 (31%), Positives = 19/41 (46%) Frame = +3 Query: 45 PPRLILNQTKIRNGSSWSGRHGCAVCRSGRLRAHQDDRRRG 167 P RL + RNG + C + R L+ H+ +RR G Sbjct: 118 PERLQNRSVRQRNGDKKTEHDQCEIFRCSELQRHRGERRSG 158
>NRFA_PENUR (Q92269) Nitrogen regulatory protein nrfA| Length = 865 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/46 (32%), Positives = 22/46 (47%) Frame = -3 Query: 228 DHPGAARELQAGGSVPPDRLRRVGDHLDEPVGVHSCKLRNHGGLTS 91 DHP +A L G+V P R + H + P G+ + L G+ S Sbjct: 291 DHPPSAFALPGNGTVGPRRPQHHHTHSNIPYGLDTYGLNEDHGINS 336
>GLMM_ZYMMO (Q5NNT4) Phosphoglucosamine mutase (EC 5.4.2.10)| Length = 445 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Frame = -3 Query: 393 GVPRPHEAPVEVPAALAGPDERQRAPERLLQLLHGV-PRLRLLHEVRGVELVHQVPDH 223 G P E+ E A++ +E + RLL G P +R++ E +LVHQ+ DH Sbjct: 382 GQPLEDESVCE---AISEAEESLKGKGRLLIRKSGTEPLIRVMAEAEDPDLVHQIVDH 436
>SMBP2_HUMAN (P38935) DNA-binding protein SMUBP-2 (EC 3.6.1.-) (ATP-dependent| helicase IGHMBP2) (Immunoglobulin mu-binding protein 2) (SMUBP-2) (Glial factor 1) (GF-1) Length = 993 Score = 27.7 bits (60), Expect = 6.9 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 2/83 (2%) Frame = -3 Query: 393 GVPRPHEAPVEVPAALAGPDERQRAPERLLQLLHGVPRLRLLHEVRGVELVHQVPDHPGA 214 G P P + PA P QR P++ P LR LH R ++ V P A Sbjct: 800 GGPAPLQPVPPTPAQTEQPPREQRGPDQ--------PDLRTLHLER-LQRVRSAQGQP-A 849 Query: 213 ARELQAGG--SVPPDRLRRVGDH 151 ++E QA G +P + ++ H Sbjct: 850 SKEQQASGQQKLPEKKKKKAKGH 872
>ZSWM2_HUMAN (Q8NEG5) Zinc finger SWIM domain-containing protein 2| Length = 633 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/43 (37%), Positives = 21/43 (48%) Frame = +1 Query: 181 RNRATCLQLARRARMIGDLMHQLHAAHLMQQPETRNPMEQLEE 309 RN + LQL R I DL+ +H QP T + E +EE Sbjct: 91 RNHESALQLGLGEREISDLLRGIHRVQ-TPQPGTNDENEHVEE 132
>SYV_DEHSC (Q3ZZG9) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 880 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/28 (39%), Positives = 14/28 (50%) Frame = +2 Query: 23 WDTGWLCSSKIDPEPNQDKKWL*LVRPP 106 W W+ S P PN DKK ++ PP Sbjct: 23 WYQYWMEKSYFKPNPNSDKKPFVIIMPP 50
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 27.7 bits (60), Expect = 6.9 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 4/91 (4%) Frame = -3 Query: 393 GVPRPHEAPVEVPAALAGPDERQRAPERLLQLLHGVPRLRLLHEVRGVELVHQVP-DHPG 217 GVP AP ++PAA+ GP AP +Q G+P + RG QVP P Sbjct: 253 GVP----APGQMPAAVTGPGPGSLAPGGGMQAQVGMPGSGPVSMERG-----QVPMQDPR 303 Query: 216 AARELQAGGSVP---PDRLRRVGDHLDEPVG 133 AA + GS+P P +GD ++P G Sbjct: 304 AAMQ---RGSLPANVPTPRGLLGDAPNDPRG 331
>TRPB_PYRAE (Q8ZV44) Tryptophan synthase beta chain (EC 4.2.1.20)| Length = 410 Score = 27.7 bits (60), Expect = 6.9 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Frame = -3 Query: 369 PVEVPAALAGPDERQRAPERLLQLLHGVPRLRLLHE-VRGVELVHQVPDHPGAARELQAG 193 P + A++ E + ER L V LLH+ V G+E V Q+P+ P A G Sbjct: 189 PGSLGIAISEAVEYVLSGERRKYLPGSVMEFVLLHQTVIGLEAVRQLPEEPDVAVACVGG 248 Query: 192 GS 187 GS Sbjct: 249 GS 250
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 27.3 bits (59), Expect = 9.0 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 1/88 (1%) Frame = -3 Query: 393 GVPRPHEAPVEVPAALAGPDERQRAPERLLQLLHGVPRLRLLHEVRGVELVHQVP-DHPG 217 GVP APV++ AA+ GP AP ++Q G+ + RG QVP P Sbjct: 253 GVP----APVQMAAAVGGPGPGSLAPAGVMQAQVGMQGAGPVPMERG-----QVPMQDPR 303 Query: 216 AARELQAGGSVPPDRLRRVGDHLDEPVG 133 AA + A + P +GD ++P G Sbjct: 304 AAMQRGALPTNVPTPRGLLGDAPNDPRG 331
>FA8_PIG (P12263) Coagulation factor VIII precursor (Procoagulant component)| Length = 2133 Score = 27.3 bits (59), Expect = 9.0 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%) Frame = -3 Query: 375 EAPVEVPAALAGPDERQRAPERLLQLLHGVPRLRL--LHEVRGVEL 244 EAP+E P GP R P R+ Q L + RL L + RGV L Sbjct: 1200 EAPLEAPGNRTGPGPRSAVPRRVKQSLKQI-RLPLEEIKPERGVVL 1244
>TRMB_MYCTU (P67498) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)| (tRNA(m7G46)-methyltransferase) Length = 263 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/60 (30%), Positives = 25/60 (41%) Frame = -3 Query: 339 PDERQRAPERLLQLLHGVPRLRLLHEVRGVELVHQVPDHPGAARELQAGGSVPPDRLRRV 160 PD +A +LL + + ++H DHPG A + A G P RL RV Sbjct: 158 PDPWPKARHHKRRLLQPATMALIADRLVPSGVLHAATDHPGYAEHIAAAGDAEP-RLVRV 216
>TRMB_MYCBO (P67499) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)| (tRNA(m7G46)-methyltransferase) Length = 263 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/60 (30%), Positives = 25/60 (41%) Frame = -3 Query: 339 PDERQRAPERLLQLLHGVPRLRLLHEVRGVELVHQVPDHPGAARELQAGGSVPPDRLRRV 160 PD +A +LL + + ++H DHPG A + A G P RL RV Sbjct: 158 PDPWPKARHHKRRLLQPATMALIADRLVPSGVLHAATDHPGYAEHIAAAGDAEP-RLVRV 216
>TRPF_LACLA (Q02002) N-(5'-phosphoribosyl)anthranilate isomerase (EC 5.3.1.24)| (PRAI) Length = 351 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/23 (43%), Positives = 17/23 (73%) Frame = -3 Query: 348 LAGPDERQRAPERLLQLLHGVPR 280 + P +RQ APE++LQ+ + VP+ Sbjct: 28 ILSPSKRQVAPEKILQITNDVPK 50
>DJLA_VIBCH (Q9KUR8) DnaJ-like protein djlA| Length = 284 Score = 27.3 bits (59), Expect = 9.0 Identities = 23/77 (29%), Positives = 28/77 (36%), Gaps = 12/77 (15%) Frame = +1 Query: 202 QLARRARM------------IGDLMHQLHAAHLMQQPETRNPMEQLEETLRRALSLVRSC 345 QL RR RM G Q H+ QQP +R+ + E L +S S Sbjct: 174 QLERRLRMQEAAFRFQQGGGFGGSQQQSHSGQQWQQPSSRHQLADAYEVL--GVSESASA 231 Query: 346 QRRGYLYRCFMGARHAD 396 Q YR M H D Sbjct: 232 QEVKRAYRKLMNEHHPD 248
>CHEB1_AGRT5 (O85128) Chemotaxis response regulator protein-glutamate| methylesterase of group 1 operon (EC 3.1.1.61) Length = 351 Score = 27.3 bits (59), Expect = 9.0 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 5/67 (7%) Frame = +1 Query: 88 LAGQAAMVAQFAGVD---AYGLIKMIADAAQTVRRNRATCL--QLARRARMIGDLMHQLH 252 LAG+ A+ G+ A GL+KM A+TV +N TC+ + R A +G + QL Sbjct: 272 LAGRNAVGVILTGMGRDGAAGLLKMRHAGARTVGQNEKTCVVYGMPRVAYELGAVEQQLP 331 Query: 253 AAHLMQQ 273 A + ++ Sbjct: 332 LASIGEE 338
>PLOD2_RAT (Q811A3) Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2| precursor (EC 1.14.11.4) (Lysyl hydroxylase 2) (LH2) Length = 737 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/29 (34%), Positives = 18/29 (62%) Frame = +3 Query: 36 GSAPPRLILNQTKIRNGSSWSGRHGCAVC 122 G+ P +++LN +SW+ +GCA+C Sbjct: 254 GNGPSKILLNYFGNYVPNSWTQENGCALC 282
>PLOD2_MOUSE (Q9R0B9) Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2| precursor (EC 1.14.11.4) (Lysyl hydroxylase 2) (LH2) Length = 737 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/29 (34%), Positives = 18/29 (62%) Frame = +3 Query: 36 GSAPPRLILNQTKIRNGSSWSGRHGCAVC 122 G+ P +++LN +SW+ +GCA+C Sbjct: 254 GNGPTKILLNYFGNYVPNSWTQENGCALC 282 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,978,093 Number of Sequences: 219361 Number of extensions: 960295 Number of successful extensions: 3841 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 3616 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3835 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
