ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal20p18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_001032032.1| Drosophila melanogaster held out wings CG102... 42 0.68
2gb|AC007114.8| Homo sapiens chromosome 17, clone RP11-166P13, co... 42 0.68
3gb|AC008144.5|AC008144 Drosophila melanogaster, chromosome 3R, r... 42 0.68
4emb|X14794.1|ZMCAB1 Maize cab-1 gene for chlorophyll a/b-binding... 42 0.68
5gb|AE003737.3| Drosophila melanogaster chromosome 3R, section 75... 42 0.68
6gb|AF005849.1|AF005849 Drosophila melanogaster anon1F4 pseudogen... 42 0.68
7ref|NM_128200.3| Arabidopsis thaliana RCY1; cyclin-dependent pro... 40 2.7
8gb|AC093365.10| Mus musculus chromosome 3, clone RP23-60O16, com... 40 2.7
9gb|AC163991.3| Mus musculus chromosome 15, clone RP24-119L11, co... 40 2.7
10gb|AY150419.1| Arabidopsis thaliana putative cyclin (At2g26430) ... 40 2.7
11gb|AY091085.1| Arabidopsis thaliana putative cyclin (At2g26430) ... 40 2.7
12emb|CR626890.8| Zebrafish DNA sequence from clone DKEY-83J7 in l... 40 2.7
13emb|BX324206.6| Zebrafish DNA sequence from clone CH211-66O10 in... 40 2.7
14gb|AF249734.1| Arabidopsis thaliana ania-6a type cyclin (RCY1) m... 40 2.7
15emb|BX324151.11| Zebrafish DNA sequence from clone CH211-62C19 i... 40 2.7
16dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 40 2.7
17gb|AC002505.3| Arabidopsis thaliana chromosome 2 clone T9J22 map... 40 2.7
18ref|XM_686371.1| PREDICTED: Danio rerio similar to endothelial c... 40 2.7
19gb|AC156618.5| Mus musculus chromosome 3, clone RP24-372J15, com... 40 2.7
20dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7
21emb|BX819076.1|CNS0A9W0 Arabidopsis thaliana Full-length cDNA Co... 40 2.7
22gb|AC114311.3| Homo sapiens chromosome 5 clone RP11-2N5, complet... 40 2.7
23gb|AC092915.7| Homo sapiens 3 BAC RP11-585F20 (Roswell Park Canc... 40 2.7
24gb|AY086218.1| Arabidopsis thaliana clone 22595 mRNA, complete s... 40 2.7
25dbj|AP004730.2| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7
26gb|AC010582.6|AC010582 Homo sapiens chromosome 14 clone CTD-2547... 40 2.7
27gb|AC102905.9| Mus musculus chromosome 15, clone RP24-303N12, co... 40 2.7
28emb|AL772198.14| Zebrafish DNA sequence from clone CH211-194D6 i... 40 2.7
29emb|AL136040.5|CNS01DVV Human chromosome 14 DNA sequence BAC C-2... 40 2.7
30gb|AC104874.11| Mus musculus chromosome 3, clone RP23-453I14, co... 40 2.7
31emb|AL935316.7| Zebrafish DNA sequence from clone CH211-239C9 in... 40 2.7
32gb|AF005850.1|AF005850 Drosophila yakuba anon1F4 pseudogene, par... 40 2.7
33dbj|AP004488.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 2.7
34emb|AL671899.11| Mouse DNA sequence from clone RP23-27B23 on chr... 40 2.7

>ref|NM_001032032.1| Drosophila melanogaster held out wings CG10293-RC, transcript variant
            C (how), mRNA
          Length = 4030

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 76   gactgatagattttgcatgtg 96
            |||||||||||||||||||||
Sbjct: 3623 gactgatagattttgcatgtg 3603



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>gb|AC007114.8| Homo sapiens chromosome 17, clone RP11-166P13, complete sequence
          Length = 148781

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 155    tatctggttatttttcagatt 175
              |||||||||||||||||||||
Sbjct: 112397 tatctggttatttttcagatt 112377



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>gb|AC008144.5|AC008144 Drosophila melanogaster, chromosome 3R, region 93F-93F, BAC clone
             BACR04F21, complete sequence
          Length = 171226

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 76    gactgatagattttgcatgtg 96
             |||||||||||||||||||||
Sbjct: 66825 gactgatagattttgcatgtg 66845



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>emb|X14794.1|ZMCAB1 Maize cab-1 gene for chlorophyll a/b-binding protein
          Length = 2100

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 31/33 (93%), Gaps = 1/33 (3%)
 Strand = Plus / Plus

                                             
Query: 103  agtcgagatgatgagttggtgtgtgtacactaa 135
            ||||||||||||||||||| || ||||||||||
Sbjct: 1802 agtcgagatgatgagttggcgt-tgtacactaa 1833



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>gb|AE003737.3| Drosophila melanogaster chromosome 3R, section 75 of 118 of the complete
              sequence
          Length = 178251

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 76     gactgatagattttgcatgtg 96
              |||||||||||||||||||||
Sbjct: 119559 gactgatagattttgcatgtg 119539



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>gb|AF005849.1|AF005849 Drosophila melanogaster anon1F4 pseudogene, partial sequence
          Length = 2329

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 76   gactgatagattttgcatgtg 96
            |||||||||||||||||||||
Sbjct: 1922 gactgatagattttgcatgtg 1902



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>ref|NM_128200.3| Arabidopsis thaliana RCY1; cyclin-dependent protein kinase regulator
            AT2G26430 (RCY1) mRNA, complete cds
          Length = 1583

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 168  ttcagattaatcaaggcatctttcttct 195
            ||||||| |||||||||||| |||||||
Sbjct: 1291 ttcagataaatcaaggcatcattcttct 1318



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>gb|AC093365.10| Mus musculus chromosome 3, clone RP23-60O16, complete sequence
          Length = 236143

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     cttcattgctgatggatgct 54
              ||||||||||||||||||||
Sbjct: 112152 cttcattgctgatggatgct 112171



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>gb|AC163991.3| Mus musculus chromosome 15, clone RP24-119L11, complete sequence
          Length = 152173

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    ggatgctgctgtgctgcatg 67
             ||||||||||||||||||||
Sbjct: 34667 ggatgctgctgtgctgcatg 34686



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>gb|AY150419.1| Arabidopsis thaliana putative cyclin (At2g26430) mRNA, complete cds
          Length = 1282

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 168  ttcagattaatcaaggcatctttcttct 195
            ||||||| |||||||||||| |||||||
Sbjct: 1173 ttcagataaatcaaggcatcattcttct 1200



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>gb|AY091085.1| Arabidopsis thaliana putative cyclin (At2g26430) mRNA, complete cds
          Length = 1537

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 168  ttcagattaatcaaggcatctttcttct 195
            ||||||| |||||||||||| |||||||
Sbjct: 1287 ttcagataaatcaaggcatcattcttct 1314



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>emb|CR626890.8| Zebrafish DNA sequence from clone DKEY-83J7 in linkage group 15,
             complete sequence
          Length = 211127

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    tgatggatgctgctgtgctg 63
             ||||||||||||||||||||
Sbjct: 84393 tgatggatgctgctgtgctg 84374



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>emb|BX324206.6| Zebrafish DNA sequence from clone CH211-66O10 in linkage group 15,
              complete sequence
          Length = 164638

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 44     tgatggatgctgctgtgctg 63
              ||||||||||||||||||||
Sbjct: 139690 tgatggatgctgctgtgctg 139671



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>gb|AF249734.1| Arabidopsis thaliana ania-6a type cyclin (RCY1) mRNA, complete cds
          Length = 1433

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 168  ttcagattaatcaaggcatctttcttct 195
            ||||||| |||||||||||| |||||||
Sbjct: 1186 ttcagataaatcaaggcatcattcttct 1213



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>emb|BX324151.11| Zebrafish DNA sequence from clone CH211-62C19 in linkage group 15,
             complete sequence
          Length = 182149

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    tgatggatgctgctgtgctg 63
             ||||||||||||||||||||
Sbjct: 30960 tgatggatgctgctgtgctg 30941



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>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010
          Length = 2039961

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    gatgagttggtgtgtgtaca 131
              ||||||||||||||||||||
Sbjct: 133576 gatgagttggtgtgtgtaca 133595



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>gb|AC002505.3| Arabidopsis thaliana chromosome 2 clone T9J22 map B68, complete
             sequence
          Length = 115851

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 168   ttcagattaatcaaggcatctttcttct 195
             ||||||| |||||||||||| |||||||
Sbjct: 29176 ttcagataaatcaaggcatcattcttct 29149



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>ref|XM_686371.1| PREDICTED: Danio rerio similar to endothelial cell adhesion
           molecule (LOC563007), mRNA
          Length = 1350

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 44  tgatggatgctgctgtgctg 63
           ||||||||||||||||||||
Sbjct: 204 tgatggatgctgctgtgctg 223



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>gb|AC156618.5| Mus musculus chromosome 3, clone RP24-372J15, complete sequence
          Length = 171545

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    tgctgctgtgctgcatgtct 70
             ||||||||||||||||||||
Sbjct: 22992 tgctgctgtgctgcatgtct 23011



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 46       atggatgctgctgtgctgca 65
                ||||||||||||||||||||
Sbjct: 18990768 atggatgctgctgtgctgca 18990787



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>emb|BX819076.1|CNS0A9W0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB43ZG05 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1513

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 168  ttcagattaatcaaggcatctttcttct 195
            ||||||| |||||||||||| |||||||
Sbjct: 1286 ttcagataaatcaaggcatcattcttct 1313



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>gb|AC114311.3| Homo sapiens chromosome 5 clone RP11-2N5, complete sequence
          Length = 96123

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   ttatttttcagattaatcaa 181
             ||||||||||||||||||||
Sbjct: 50396 ttatttttcagattaatcaa 50377



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>gb|AC092915.7| Homo sapiens 3 BAC RP11-585F20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 187215

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   gtgtgtgtacactaaaaaga 140
             ||||||||||||||||||||
Sbjct: 75303 gtgtgtgtacactaaaaaga 75284



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>gb|AY086218.1| Arabidopsis thaliana clone 22595 mRNA, complete sequence
          Length = 1583

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 168  ttcagattaatcaaggcatctttcttct 195
            ||||||| |||||||||||| |||||||
Sbjct: 1291 ttcagataaatcaaggcatcattcttct 1318



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>dbj|AP004730.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0009J19
          Length = 156988

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    atggatgctgctgtgctgca 65
             ||||||||||||||||||||
Sbjct: 83438 atggatgctgctgtgctgca 83457



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>gb|AC010582.6|AC010582 Homo sapiens chromosome 14 clone CTD-2547F10, complete sequence
          Length = 191549

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    tcaaggcatctttcttcttc 197
              ||||||||||||||||||||
Sbjct: 102526 tcaaggcatctttcttcttc 102507



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>gb|AC102905.9| Mus musculus chromosome 15, clone RP24-303N12, complete sequence
          Length = 153799

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 48     ggatgctgctgtgctgcatg 67
              ||||||||||||||||||||
Sbjct: 130632 ggatgctgctgtgctgcatg 130651



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>emb|AL772198.14| Zebrafish DNA sequence from clone CH211-194D6 in linkage group 9,
             complete sequence
          Length = 211682

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 43    ctgatggatgctgctgtgctgcat 66
             ||||||||||||| ||||||||||
Sbjct: 25039 ctgatggatgctgatgtgctgcat 25016



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>emb|AL136040.5|CNS01DVV Human chromosome 14 DNA sequence BAC C-2506P8 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 199420

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   tcaaggcatctttcttcttc 197
             ||||||||||||||||||||
Sbjct: 97512 tcaaggcatctttcttcttc 97531



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>gb|AC104874.11| Mus musculus chromosome 3, clone RP23-453I14, complete sequence
          Length = 182940

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     tgctgctgtgctgcatgtct 70
              ||||||||||||||||||||
Sbjct: 165625 tgctgctgtgctgcatgtct 165644



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>emb|AL935316.7| Zebrafish DNA sequence from clone CH211-239C9 in linkage group 3,
             complete sequence
          Length = 174887

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    tgatggatgctgctgtgctg 63
             ||||||||||||||||||||
Sbjct: 83631 tgatggatgctgctgtgctg 83612



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>gb|AF005850.1|AF005850 Drosophila yakuba anon1F4 pseudogene, partial sequence
          Length = 1611

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 77   actgatagattttgcatgtg 96
            ||||||||||||||||||||
Sbjct: 1137 actgatagattttgcatgtg 1118



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>dbj|AP004488.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT02F05, TM0020,
             complete sequence
          Length = 80920

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   tatctggttatttttcagat 174
             ||||||||||||||||||||
Sbjct: 66808 tatctggttatttttcagat 66789



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>emb|AL671899.11| Mouse DNA sequence from clone RP23-27B23 on chromosome 3, complete
             sequence
          Length = 132775

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    cttcattgctgatggatgct 54
             ||||||||||||||||||||
Sbjct: 83785 cttcattgctgatggatgct 83804


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,153,560
Number of Sequences: 3902068
Number of extensions: 2153560
Number of successful extensions: 160825
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 160683
Number of HSP's gapped (non-prelim): 143
length of query: 212
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 190
effective length of database: 17,147,199,772
effective search space: 3257967956680
effective search space used: 3257967956680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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