ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal20o17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KI3L1_MOUSE (P83555) Killer cell immunoglobulin-like receptor 3D... 34 0.40
2NU5M_RHISA (Q9ZYM7) NADH-ubiquinone oxidoreductase chain 5 (EC 1... 32 2.0
3RON_MOUSE (Q62190) Macrophage-stimulating protein receptor precu... 30 5.8
4I17RB_HUMAN (Q9NRM6) Interleukin-17 receptor B precursor (IL-17 ... 30 5.8
5RL18_BACSK (Q5WLP6) 50S ribosomal protein L18 29 9.9
6DBP10_KLULA (Q6CIR0) ATP-dependent RNA helicase DBP10 (EC 3.6.1.-) 29 9.9

>KI3L1_MOUSE (P83555) Killer cell immunoglobulin-like receptor 3DL1 precursor|
          Length = 432

 Score = 33.9 bits (76), Expect = 0.40
 Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = +3

Query: 471 FQIMQKILAHIGEHCCPFLTL--SYLVPLGLAPSCLRNHCLTC 593
           F ++Q++ AH+G H  PFL+   SY+VPLG      +N  LTC
Sbjct: 13  FFLVQRMSAHVGSHDKPFLSAWPSYVVPLG------QNVTLTC 49



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>NU5M_RHISA (Q9ZYM7) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 552

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
 Frame = +2

Query: 293 MYFQTWRIGILFFAVGNCLNFMSFAYAAQGHGCHNFYCL--W-QCLLGF---LRQSSISW 454
           M+F T+   I F    N ++ +SF Y         FY L  W  C+  F   +  S + W
Sbjct: 19  MFFMTFYFNIFFIFEYNLMSILSFEY--------KFYILLDWMSCMFSFTVLMISSMVLW 70

Query: 455 SGETILSDNAKDTSTHWRTLL 517
              + +S +   TS  W  L+
Sbjct: 71  YSHSYMSSDKNKTSFCWMVLM 91



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>RON_MOUSE (Q62190) Macrophage-stimulating protein receptor precursor (EC|
           2.7.10.1) (MSP receptor) (p185-Ron) (Stem cell-derived
           tyrosine kinase) (CDw136 antigen) [Contains:
           Macrophage-stimulating protein receptor alpha chain;
           Macrophage-stimulating prote
          Length = 1378

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
 Frame = +2

Query: 335 VGNCLNFMS----FAYAAQGHGCHNFYCLWQCLLGFLRQSSISWSGETILSDNAKDTSTH 502
           +GN L F S    F    QG GC +F   W+CL    R     W G+    D  K+    
Sbjct: 507 LGNDLLFASGDQVFKVPIQGPGCRHFLTCWRCLRA-QRFMGCGWCGDR--CDRQKECPGS 563

Query: 503 WR 508
           W+
Sbjct: 564 WQ 565



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>I17RB_HUMAN (Q9NRM6) Interleukin-17 receptor B precursor (IL-17 receptor B)|
           (IL-17RB) (Interleukin-17B receptor) (IL-17B receptor)
           (IL-17 receptor homolog 1) (IL-17Rh1) (IL17Rh1)
           (Cytokine receptor CRL4)
          Length = 502

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +1

Query: 373 RTGSWLPQLLLSLAMSSWFPSAIINLLEWR 462
           + G WLP LLLSL +++W   A I L+ WR
Sbjct: 286 KPGGWLPLLLLSLLVATWVLVAGIYLM-WR 314



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>RL18_BACSK (Q5WLP6) 50S ribosomal protein L18|
          Length = 120

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -1

Query: 416 IAKDNKSCGNHDPVRHMRRT*SLGSSPQRKRVYLFSKS 303
           I K NK+ G      H+RRT  L  +PQR R+ +F  S
Sbjct: 2   ITKPNKNAGRKKRHAHVRRT--LSGTPQRPRLNVFRSS 37



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>DBP10_KLULA (Q6CIR0) ATP-dependent RNA helicase DBP10 (EC 3.6.1.-)|
          Length = 973

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 19/85 (22%), Positives = 37/85 (43%)
 Frame = -1

Query: 530  RKKRAAVFANVC*YLLHYLKELSLHSRRLMIAEGNQEDIAKDNKSCGNHDPVRHMRRT*S 351
            +KK+   F +   YL H+     +  ++L I+ G   D +       N D V+  ++T +
Sbjct: 758  KKKQKKTFRDPTFYLSHFAPTSDIQDKQLQISSGFTNDASNAAFDLANDDKVQVHKQTAT 817

Query: 350  LGSSPQRKRVYLFSKSGNT*LILGQ 276
            +    +RK+        N   I+G+
Sbjct: 818  VKWDKKRKKYVNTQGLDNKKYIIGE 842


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,009,917
Number of Sequences: 219361
Number of extensions: 2075473
Number of successful extensions: 6073
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6072
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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