ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal21d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1 95 4e-20
2UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2 95 6e-20
3UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3 64 1e-10
4PMD1_SCHPO (P36619) Leptomycin B resistance protein pmd1 29 2.9
5VP23_SHV21 (Q01008) Probable capsid protein VP23 (Gene 26 protein) 29 2.9
6SYI_HALSA (Q9HN97) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 28 6.5
7YFJD_BACSU (O31555) Hypothetical lipoprotein yfjD precursor 28 8.5
8FUMC_RICPR (Q9ZCQ4) Fumarate hydratase class II (EC 4.2.1.2) (Fu... 28 8.5

>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1|
          Length = 1051

 Score = 95.1 bits (235), Expect = 4e-20
 Identities = 46/61 (75%), Positives = 49/61 (80%)
 Frame = +3

Query: 27  SRTFGIPIPEWAKTPNKLSAEAVDRVIVPDFQPKQGVKIVTDEKATSLXXXXXXXXXXIE 206
           + TFGIPIPEWAKTPNKL+AEAVD+VIVPDFQPKQGVKIVT EKATSL          IE
Sbjct: 768 AETFGIPIPEWAKTPNKLAAEAVDKVIVPDFQPKQGVKIVTHEKATSLSSASVDDAAVIE 827

Query: 207 E 209
           E
Sbjct: 828 E 828



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>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2|
          Length = 1051

 Score = 94.7 bits (234), Expect = 6e-20
 Identities = 46/61 (75%), Positives = 49/61 (80%)
 Frame = +3

Query: 27  SRTFGIPIPEWAKTPNKLSAEAVDRVIVPDFQPKQGVKIVTDEKATSLXXXXXXXXXXIE 206
           + TFGIPI EWAKTPNKL+AEAVD+VIVPDFQPKQGVKIVTDEKATSL          IE
Sbjct: 768 AETFGIPISEWAKTPNKLAAEAVDKVIVPDFQPKQGVKIVTDEKATSLSSASVDDAAVIE 827

Query: 207 E 209
           E
Sbjct: 828 E 828



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>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3|
          Length = 1053

 Score = 63.5 bits (153), Expect = 1e-10
 Identities = 30/61 (49%), Positives = 42/61 (68%)
 Frame = +3

Query: 27  SRTFGIPIPEWAKTPNKLSAEAVDRVIVPDFQPKQGVKIVTDEKATSLXXXXXXXXXXIE 206
           + +FG+ IPEWAK  +KL A+ V+++ VP F+PKQGV IVTDEKA++L          IE
Sbjct: 771 AESFGVAIPEWAKDTSKL-ADVVNKIAVPTFEPKQGVNIVTDEKASNLSSTSVDDVAVIE 829

Query: 207 E 209
           +
Sbjct: 830 D 830



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>PMD1_SCHPO (P36619) Leptomycin B resistance protein pmd1|
          Length = 1362

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = -2

Query: 151 SVTILTPCFGWKSGTITLSTA 89
           SVTIL+   GWK G +TLST+
Sbjct: 928 SVTILSLATGWKLGLVTLSTS 948



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>VP23_SHV21 (Q01008) Probable capsid protein VP23 (Gene 26 protein)|
          Length = 304

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = -2

Query: 157 FSSVTILTPCFGWKSGTITLSTASADSLFGVLAHSGMG---IPKVLL 26
           FS++T++ P FG +  T+TL +   D +F  +  S +    I K+LL
Sbjct: 108 FSNLTVIPPVFGRQQATVTLESNGFDLVFPSVVPSDLAQAIIGKLLL 154



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>SYI_HALSA (Q9HN97) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 1070

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 15  NIEGSRTFGIPIPEWAKTPNKLSAEAVDRVIV 110
           N+   R +GIP+P W  TP   S +A D ++V
Sbjct: 457 NVSRQRYWGIPVPIW--TPEDWSGDAEDVLVV 486



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>YFJD_BACSU (O31555) Hypothetical lipoprotein yfjD precursor|
          Length = 185

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 42  IPIPEWAKTPNKLSAEAVDRVIVP 113
           I IP W   PN L  EAV+R I+P
Sbjct: 130 IRIPTWNIIPNPLFFEAVERYILP 153



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>FUMC_RICPR (Q9ZCQ4) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase C)|
          Length = 461

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 36  FGIPIPEWAKTPNKLSAEAVDRVIVPD 116
           +GI + E AK  N LS E  D+++VP+
Sbjct: 431 YGITLKEAAKKLNFLSEEEFDKIVVPE 457


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,959,937
Number of Sequences: 219361
Number of extensions: 518510
Number of successful extensions: 1755
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1754
length of database: 80,573,946
effective HSP length: 45
effective length of database: 70,702,701
effective search space used: 1696864824
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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