ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal21c16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK069946.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 1e-25
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 94 3e-16
3dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic D... 94 3e-16
4dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic D... 94 3e-16
5gb|AC145691.5| Mus musculus chromosome 1, clone RP24-278B15, com... 42 1.1
6gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 4.3
7emb|AL049868.20|HSJ927M24 Human DNA sequence from clone RP5-927M... 40 4.3
8emb|CR938099.1| Single read from an extremity of a full-length c... 40 4.3
9emb|BX322646.10| Zebrafish DNA sequence from clone DKEYP-11A1 in... 40 4.3
10dbj|AK091209.1| Homo sapiens cDNA FLJ33890 fis, clone CTONG2007474 40 4.3
11emb|BX470241.5| Zebrafish DNA sequence from clone CH211-240J13 i... 40 4.3
12emb|BX120012.24| Zebrafish DNA sequence from clone CH211-205H19,... 40 4.3
13emb|AL929379.14| Zebrafish DNA sequence from clone CH211-156H6, ... 40 4.3
14emb|BX005021.4| Zebrafish DNA sequence from clone DKEY-69D12, co... 40 4.3

>dbj|AK069946.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035A19, full
            insert sequence
          Length = 2508

 Score =  125 bits (63), Expect = 1e-25
 Identities = 123/143 (86%)
 Strand = Plus / Plus

                                                                        
Query: 167  gaagttagaggtggaacagatattacactggatgctttagatgcttacctgaaatacctc 226
            ||||||||||||||||| || || ||  |||||||||||| ||| |||||||||||||| 
Sbjct: 964  gaagttagaggtggaacggaaatcactttggatgctttagctgcatacctgaaataccta 1023

                                                                        
Query: 227  gaaggcacaggaaaggccagttggcaagagttgcatgataaggtgcgctttgctgaaacc 286
            ||||| ||||| ||||| ||||||||||||||||||||||| || || ||  ||||||| 
Sbjct: 1024 gaaggaacagggaaggctagttggcaagagttgcatgataaagtacggttaactgaaact 1083

                                   
Query: 287  agggatggtgcttcgtttcgcac 309
            || |||||||| |||||| ||||
Sbjct: 1084 agagatggtgcctcgttttgcac 1106



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 80/91 (87%)
 Strand = Plus / Plus

                                                                            
Query: 167      gaagttagaggtggaacagatattacactggatgctttagatgcttacctgaaatacctc 226
                ||||||||||||||||| || || ||  |||||||||||| ||| |||||||||||||| 
Sbjct: 20598264 gaagttagaggtggaacggaaatcactttggatgctttagctgcatacctgaaataccta 20598323

                                               
Query: 227      gaaggcacaggaaaggccagttggcaagagt 257
                ||||| ||||| ||||| |||||||||||||
Sbjct: 20598324 gaaggaacagggaaggctagttggcaagagt 20598354



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>dbj|AP005567.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1254_E07
          Length = 124028

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 80/91 (87%)
 Strand = Plus / Plus

                                                                          
Query: 167    gaagttagaggtggaacagatattacactggatgctttagatgcttacctgaaatacctc 226
              ||||||||||||||||| || || ||  |||||||||||| ||| |||||||||||||| 
Sbjct: 115911 gaagttagaggtggaacggaaatcactttggatgctttagctgcatacctgaaataccta 115970

                                             
Query: 227    gaaggcacaggaaaggccagttggcaagagt 257
              ||||| ||||| ||||| |||||||||||||
Sbjct: 115971 gaaggaacagggaaggctagttggcaagagt 116001



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>dbj|AP005314.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0515E01
          Length = 140063

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 80/91 (87%)
 Strand = Plus / Plus

                                                                         
Query: 167   gaagttagaggtggaacagatattacactggatgctttagatgcttacctgaaatacctc 226
             ||||||||||||||||| || || ||  |||||||||||| ||| |||||||||||||| 
Sbjct: 63922 gaagttagaggtggaacggaaatcactttggatgctttagctgcatacctgaaataccta 63981

                                            
Query: 227   gaaggcacaggaaaggccagttggcaagagt 257
             ||||| ||||| ||||| |||||||||||||
Sbjct: 63982 gaaggaacagggaaggctagttggcaagagt 64012



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>gb|AC145691.5| Mus musculus chromosome 1, clone RP24-278B15, complete sequence
          Length = 164151

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 31    cctcattcagaggaagattaa 51
             |||||||||||||||||||||
Sbjct: 51098 cctcattcagaggaagattaa 51118



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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 214     cctgaaatacctcgaaggca 233
               ||||||||||||||||||||
Sbjct: 1213004 cctgaaatacctcgaaggca 1212985



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>emb|AL049868.20|HSJ927M24 Human DNA sequence from clone RP5-927M24 on chromosome 20 Contains a
            novel gene (LOC128439), the 5' end of the gene for a
            novel protein (KIAA1219), the RPS3P2 gene for ribosomal
            protein S3 pseudogene 2 and a CpG island, complete
            sequence
          Length = 121922

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 227  gaaggcacaggaaaggccag 246
            ||||||||||||||||||||
Sbjct: 5229 gaaggcacaggaaaggccag 5210



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>emb|CR938099.1| Single read from an extremity of a full-length cDNA clone made from
           Aedes aegypti total adult females. 5-prime end of clone
           KW0AAA2YK14AAM1 from strain Liverpool of Aedes aegypti
           (yellow fever mosquito)
          Length = 742

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 142 aatgtttgcatcggaaagtt 161
           ||||||||||||||||||||
Sbjct: 291 aatgtttgcatcggaaagtt 310



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>emb|BX322646.10| Zebrafish DNA sequence from clone DKEYP-11A1 in linkage group 14,
             complete sequence
          Length = 145265

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    gaagattaaaagtaatgtct 62
             ||||||||||||||||||||
Sbjct: 62374 gaagattaaaagtaatgtct 62355



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>dbj|AK091209.1| Homo sapiens cDNA FLJ33890 fis, clone CTONG2007474
          Length = 3085

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 227  gaaggcacaggaaaggccag 246
            ||||||||||||||||||||
Sbjct: 1081 gaaggcacaggaaaggccag 1062



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>emb|BX470241.5| Zebrafish DNA sequence from clone CH211-240J13 in linkage group 14,
              complete sequence
          Length = 163257

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 43     gaagattaaaagtaatgtct 62
              ||||||||||||||||||||
Sbjct: 114059 gaagattaaaagtaatgtct 114078



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>emb|BX120012.24| Zebrafish DNA sequence from clone CH211-205H19, complete sequence
          Length = 152578

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    ggaggaaaatagcaggttca 142
              ||||||||||||||||||||
Sbjct: 136345 ggaggaaaatagcaggttca 136364



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>emb|AL929379.14| Zebrafish DNA sequence from clone CH211-156H6, complete sequence
          Length = 167232

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    cagaggaagattaaaagtaa 57
             ||||||||||||||||||||
Sbjct: 23626 cagaggaagattaaaagtaa 23607



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>emb|BX005021.4| Zebrafish DNA sequence from clone DKEY-69D12, complete sequence
          Length = 188337

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    gaagattaaaagtaatgtct 62
             ||||||||||||||||||||
Sbjct: 13729 gaagattaaaagtaatgtct 13710


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,477,407
Number of Sequences: 3902068
Number of extensions: 2477407
Number of successful extensions: 41924
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41882
Number of HSP's gapped (non-prelim): 42
length of query: 329
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 307
effective length of database: 17,147,199,772
effective search space: 5264190330004
effective search space used: 5264190330004
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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