ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal20n09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_193885.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1248 Score = 174 bits (88), Expect = 7e-41 Identities = 166/192 (86%) Strand = Plus / Plus Query: 1 catcgccgacgggctcggcatgcgccgggtcgggttcgtcttcacgcaggcggtcgggag 60 ||||||| |||| ||||| |||||||| ||||| | || ||||||||||| |||||||| Sbjct: 603 catcgcccacggcctcgggatgcgccgcgtcggcctggtgttcacgcaggcagtcgggag 662 Query: 61 gaaggccagcgagacgggcgagtacaccctgtccaacagcgaggtcgtccaggccgccca 120 |||| ||||||| || |||||||||||| |||||||| ||||||| | |||||| || | Sbjct: 663 gaagaccagcgacactggcgagtacaccatgtccaaccgcgaggtgcttcaggccaccga 722 Query: 121 gctgcaggcagagggcgggatcccggagtgggtcaccgccgtggtgaagctggaggtggg 180 ||||||||| |||||||||||||||||||||||||||||| | || ||||| |||||||| Sbjct: 723 gctgcaggcggagggcgggatcccggagtgggtcaccgccatagtcaagctcgaggtggg 782 Query: 181 ggaagacggctc 192 ||| || ||||| Sbjct: 783 ggatgatggctc 794
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 174 bits (88), Expect = 7e-41 Identities = 166/192 (86%) Strand = Plus / Plus Query: 1 catcgccgacgggctcggcatgcgccgggtcgggttcgtcttcacgcaggcggtcgggag 60 ||||||| |||| ||||| |||||||| ||||| | || ||||||||||| |||||||| Sbjct: 15627594 catcgcccacggcctcgggatgcgccgcgtcggcctggtgttcacgcaggcagtcgggag 15627653 Query: 61 gaaggccagcgagacgggcgagtacaccctgtccaacagcgaggtcgtccaggccgccca 120 |||| ||||||| || |||||||||||| |||||||| ||||||| | |||||| || | Sbjct: 15627654 gaagaccagcgacactggcgagtacaccatgtccaaccgcgaggtgcttcaggccaccga 15627713 Query: 121 gctgcaggcagagggcgggatcccggagtgggtcaccgccgtggtgaagctggaggtggg 180 ||||||||| |||||||||||||||||||||||||||||| | || ||||| |||||||| Sbjct: 15627714 gctgcaggcggagggcgggatcccggagtgggtcaccgccatagtcaagctcgaggtggg 15627773 Query: 181 ggaagacggctc 192 ||| || ||||| Sbjct: 15627774 ggatgatggctc 15627785
>dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0416G11 Length = 138858 Score = 174 bits (88), Expect = 7e-41 Identities = 166/192 (86%) Strand = Plus / Plus Query: 1 catcgccgacgggctcggcatgcgccgggtcgggttcgtcttcacgcaggcggtcgggag 60 ||||||| |||| ||||| |||||||| ||||| | || ||||||||||| |||||||| Sbjct: 65491 catcgcccacggcctcgggatgcgccgcgtcggcctggtgttcacgcaggcagtcgggag 65550 Query: 61 gaaggccagcgagacgggcgagtacaccctgtccaacagcgaggtcgtccaggccgccca 120 |||| ||||||| || |||||||||||| |||||||| ||||||| | |||||| || | Sbjct: 65551 gaagaccagcgacactggcgagtacaccatgtccaaccgcgaggtgcttcaggccaccga 65610 Query: 121 gctgcaggcagagggcgggatcccggagtgggtcaccgccgtggtgaagctggaggtggg 180 ||||||||| |||||||||||||||||||||||||||||| | || ||||| |||||||| Sbjct: 65611 gctgcaggcggagggcgggatcccggagtgggtcaccgccatagtcaagctcgaggtggg 65670 Query: 181 ggaagacggctc 192 ||| || ||||| Sbjct: 65671 ggatgatggctc 65682
>dbj|AK107503.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-E03, full insert sequence Length = 2089 Score = 174 bits (88), Expect = 7e-41 Identities = 166/192 (86%) Strand = Plus / Plus Query: 1 catcgccgacgggctcggcatgcgccgggtcgggttcgtcttcacgcaggcggtcgggag 60 ||||||| |||| ||||| |||||||| ||||| | || ||||||||||| |||||||| Sbjct: 642 catcgcccacggcctcgggatgcgccgcgtcggcctggtgttcacgcaggcagtcgggag 701 Query: 61 gaaggccagcgagacgggcgagtacaccctgtccaacagcgaggtcgtccaggccgccca 120 |||| ||||||| || |||||||||||| |||||||| ||||||| | |||||| || | Sbjct: 702 gaagaccagcgacactggcgagtacaccatgtccaaccgcgaggtgcttcaggccaccga 761 Query: 121 gctgcaggcagagggcgggatcccggagtgggtcaccgccgtggtgaagctggaggtggg 180 ||||||||| |||||||||||||||||||||||||||||| | || ||||| |||||||| Sbjct: 762 gctgcaggcggagggcgggatcccggagtgggtcaccgccatagtcaagctcgaggtggg 821 Query: 181 ggaagacggctc 192 ||| || ||||| Sbjct: 822 ggatgatggctc 833
>dbj|AK059266.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-B02, full insert sequence Length = 1478 Score = 174 bits (88), Expect = 7e-41 Identities = 166/192 (86%) Strand = Plus / Plus Query: 1 catcgccgacgggctcggcatgcgccgggtcgggttcgtcttcacgcaggcggtcgggag 60 ||||||| |||| ||||| |||||||| ||||| | || ||||||||||| |||||||| Sbjct: 646 catcgcccacggcctcgggatgcgccgcgtcggcctggtgttcacgcaggcagtcgggag 705 Query: 61 gaaggccagcgagacgggcgagtacaccctgtccaacagcgaggtcgtccaggccgccca 120 |||| ||||||| || |||||||||||| |||||||| ||||||| | |||||| || | Sbjct: 706 gaagaccagcgacactggcgagtacaccatgtccaaccgcgaggtgcttcaggccaccga 765 Query: 121 gctgcaggcagagggcgggatcccggagtgggtcaccgccgtggtgaagctggaggtggg 180 ||||||||| |||||||||||||||||||||||||||||| | || ||||| |||||||| Sbjct: 766 gctgcaggcggagggcgggatcccggagtgggtcaccgccatagtcaagctcgaggtggg 825 Query: 181 ggaagacggctc 192 ||| || ||||| Sbjct: 826 ggatgatggctc 837
>ref|NM_201985.1| Arabidopsis thaliana unknown protein AT2G47970 transcript variant AT2G47970.2 mRNA, complete cds Length = 1665 Score = 44.1 bits (22), Expect = 0.17 Identities = 31/34 (91%) Strand = Plus / Plus Query: 145 ggagtgggtcaccgccgtggtgaagctggaggtg 178 |||||||||||| || ||||||||||| |||||| Sbjct: 789 ggagtgggtcacggcggtggtgaagcttgaggtg 822
>ref|NM_130364.2| Arabidopsis thaliana unknown protein AT2G47970 transcript variant AT2G47970.1 mRNA, complete cds Length = 1500 Score = 44.1 bits (22), Expect = 0.17 Identities = 31/34 (91%) Strand = Plus / Plus Query: 145 ggagtgggtcaccgccgtggtgaagctggaggtg 178 |||||||||||| || ||||||||||| |||||| Sbjct: 789 ggagtgggtcacggcggtggtgaagcttgaggtg 822
>gb|BT025256.1| Arabidopsis thaliana At2g47970 mRNA, complete cds Length = 1065 Score = 44.1 bits (22), Expect = 0.17 Identities = 31/34 (91%) Strand = Plus / Plus Query: 145 ggagtgggtcaccgccgtggtgaagctggaggtg 178 |||||||||||| || ||||||||||| |||||| Sbjct: 738 ggagtgggtcacggcggtggtgaagcttgaggtg 771
>gb|AC006072.4| Arabidopsis thaliana chromosome 2 clone T9J23 map CIC06C03, complete sequence Length = 81565 Score = 44.1 bits (22), Expect = 0.17 Identities = 31/34 (91%) Strand = Plus / Plus Query: 145 ggagtgggtcaccgccgtggtgaagctggaggtg 178 |||||||||||| || ||||||||||| |||||| Sbjct: 33389 ggagtgggtcacggcggtggtgaagcttgaggtg 33422
>gb|AC005309.3| Arabidopsis thaliana chromosome 2 clone F17A22 map CIC06C03, complete sequence Length = 106355 Score = 44.1 bits (22), Expect = 0.17 Identities = 31/34 (91%) Strand = Plus / Plus Query: 145 ggagtgggtcaccgccgtggtgaagctggaggtg 178 |||||||||||| || ||||||||||| |||||| Sbjct: 97704 ggagtgggtcacggcggtggtgaagcttgaggtg 97737
>gb|AF372952.1|AF372952 Arabidopsis thaliana At2g47970/T9J23.11 mRNA sequence Length = 1362 Score = 44.1 bits (22), Expect = 0.17 Identities = 31/34 (91%) Strand = Plus / Plus Query: 145 ggagtgggtcaccgccgtggtgaagctggaggtg 178 |||||||||||| || ||||||||||| |||||| Sbjct: 750 ggagtgggtcacggcggtggtgaagcttgaggtg 783
>emb|BX820995.1|CNS0A8RD Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH8ZC07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1396 Score = 44.1 bits (22), Expect = 0.17 Identities = 31/34 (91%) Strand = Plus / Plus Query: 145 ggagtgggtcaccgccgtggtgaagctggaggtg 178 |||||||||||| || ||||||||||| |||||| Sbjct: 762 ggagtgggtcacggcggtggtgaagcttgaggtg 795
>emb|BX819356.1|CNS0A8WF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB71ZB08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1353 Score = 44.1 bits (22), Expect = 0.17 Identities = 31/34 (91%) Strand = Plus / Plus Query: 145 ggagtgggtcaccgccgtggtgaagctggaggtg 178 |||||||||||| || ||||||||||| |||||| Sbjct: 727 ggagtgggtcacggcggtggtgaagcttgaggtg 760
>emb|BX818970.1|CNS0A8W8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB32ZD05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1325 Score = 44.1 bits (22), Expect = 0.17 Identities = 31/34 (91%) Strand = Plus / Plus Query: 145 ggagtgggtcaccgccgtggtgaagctggaggtg 178 |||||||||||| || ||||||||||| |||||| Sbjct: 770 ggagtgggtcacggcggtggtgaagcttgaggtg 803
>emb|BX818888.1|CNS0A8TM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB23ZD09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1616 Score = 44.1 bits (22), Expect = 0.17 Identities = 31/34 (91%) Strand = Plus / Plus Query: 145 ggagtgggtcaccgccgtggtgaagctggaggtg 178 |||||||||||| || ||||||||||| |||||| Sbjct: 740 ggagtgggtcacggcggtggtgaagcttgaggtg 773
>emb|BX818856.1|CNS0A8UT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB1ZF01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1295 Score = 44.1 bits (22), Expect = 0.17 Identities = 31/34 (91%) Strand = Plus / Plus Query: 145 ggagtgggtcaccgccgtggtgaagctggaggtg 178 |||||||||||| || ||||||||||| |||||| Sbjct: 760 ggagtgggtcacggcggtggtgaagcttgaggtg 793
>emb|BX820942.1|CNS0A8L4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH83ZE11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1422 Score = 44.1 bits (22), Expect = 0.17 Identities = 31/34 (91%) Strand = Plus / Plus Query: 145 ggagtgggtcaccgccgtggtgaagctggaggtg 178 |||||||||||| || ||||||||||| |||||| Sbjct: 769 ggagtgggtcacggcggtggtgaagcttgaggtg 802
>emb|BX820244.1|CNS0A8KG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH11ZG12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1378 Score = 44.1 bits (22), Expect = 0.17 Identities = 31/34 (91%) Strand = Plus / Plus Query: 145 ggagtgggtcaccgccgtggtgaagctggaggtg 178 |||||||||||| || ||||||||||| |||||| Sbjct: 762 ggagtgggtcacggcggtggtgaagcttgaggtg 795
>emb|BX820092.1|CNS0A8J9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS72ZG12 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1366 Score = 44.1 bits (22), Expect = 0.17 Identities = 31/34 (91%) Strand = Plus / Plus Query: 145 ggagtgggtcaccgccgtggtgaagctggaggtg 178 |||||||||||| || ||||||||||| |||||| Sbjct: 753 ggagtgggtcacggcggtggtgaagcttgaggtg 786
>emb|BX819965.1|CNS0A8IC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS54ZF11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1337 Score = 44.1 bits (22), Expect = 0.17 Identities = 31/34 (91%) Strand = Plus / Plus Query: 145 ggagtgggtcaccgccgtggtgaagctggaggtg 178 |||||||||||| || ||||||||||| |||||| Sbjct: 765 ggagtgggtcacggcggtggtgaagcttgaggtg 798
>emb|BX819961.1|CNS0A8FY Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS54ZC05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1442 Score = 44.1 bits (22), Expect = 0.17 Identities = 31/34 (91%) Strand = Plus / Plus Query: 145 ggagtgggtcaccgccgtggtgaagctggaggtg 178 |||||||||||| || ||||||||||| |||||| Sbjct: 761 ggagtgggtcacggcggtggtgaagcttgaggtg 794
>emb|BX820627.1|CNS0A7WN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH54ZA05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1355 Score = 44.1 bits (22), Expect = 0.17 Identities = 31/34 (91%) Strand = Plus / Plus Query: 145 ggagtgggtcaccgccgtggtgaagctggaggtg 178 |||||||||||| || ||||||||||| |||||| Sbjct: 772 ggagtgggtcacggcggtggtgaagcttgaggtg 805
>gb|AY089192.1| Arabidopsis thaliana clone 7887 mRNA, complete sequence Length = 1495 Score = 44.1 bits (22), Expect = 0.17 Identities = 31/34 (91%) Strand = Plus / Plus Query: 145 ggagtgggtcaccgccgtggtgaagctggaggtg 178 |||||||||||| || ||||||||||| |||||| Sbjct: 785 ggagtgggtcacggcggtggtgaagcttgaggtg 818
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.17 Identities = 22/22 (100%) Strand = Plus / Minus Query: 2 atcgccgacgggctcggcatgc 23 |||||||||||||||||||||| Sbjct: 4013573 atcgccgacgggctcggcatgc 4013552
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 42.1 bits (21), Expect = 0.67 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 gaggaaggccagcgagacggg 78 ||||||||||||||||||||| Sbjct: 1756451 gaggaaggccagcgagacggg 1756471
>gb|AE017286.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough plasmid pDV, complete sequence Length = 202301 Score = 42.1 bits (21), Expect = 0.67 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 ggttcgtcttcacgcaggcgg 53 ||||||||||||||||||||| Sbjct: 61010 ggttcgtcttcacgcaggcgg 61030
>emb|AL162420.13| Human DNA sequence from clone RP11-380P16 on chromosome 9 Contains the IFNA17 gene for interferon, alpha 17, a interferon, omega 1 (IFNW1) pseudogene,the IFNA14 gene for interferon, alpha 14, the IFNA5 gene for interferon, alpha 5, a novel gene (KIAA1354) (FLJ13568) and 2 interferon pseudogenes, complete sequence Length = 124491 Score = 42.1 bits (21), Expect = 0.67 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 ggtgaagctggaggtggggga 183 ||||||||||||||||||||| Sbjct: 109751 ggtgaagctggaggtggggga 109771
>gb|BC052776.1| Homo sapiens kelch-like 9 (Drosophila), mRNA (cDNA clone IMAGE:4821138) Length = 2352 Score = 42.1 bits (21), Expect = 0.67 Identities = 21/21 (100%) Strand = Plus / Minus Query: 163 ggtgaagctggaggtggggga 183 ||||||||||||||||||||| Sbjct: 1460 ggtgaagctggaggtggggga 1440
>emb|AJ488585.1|RSP488585 Rhodobacter sphaeroides third chemotaxis operon (cheA4, R3, B2, Y6, A3, W4, slp and tlpT genes) Length = 12814 Score = 42.1 bits (21), Expect = 0.67 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 gaggaaggccagcgagacggg 78 ||||||||||||||||||||| Sbjct: 2348 gaggaaggccagcgagacggg 2328
>gb|AC131954.1| Homo sapiens BAC clone RP11-761I13 from 2, complete sequence Length = 100732 Score = 42.1 bits (21), Expect = 0.67 Identities = 21/21 (100%) Strand = Plus / Plus Query: 169 gctggaggtgggggaagacgg 189 ||||||||||||||||||||| Sbjct: 86939 gctggaggtgggggaagacgg 86959
>gb|AE004444.1| Pseudomonas aeruginosa PAO1, section 5 of 529 of the complete genome Length = 10060 Score = 42.1 bits (21), Expect = 0.67 Identities = 27/29 (93%) Strand = Plus / Plus Query: 77 ggcgagtacaccctgtccaacagcgaggt 105 ||||||||| ||||||||||| ||||||| Sbjct: 6178 ggcgagtacgccctgtccaaccgcgaggt 6206
>gb|AC164954.3| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940128D9, complete sequence Length = 128585 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 3 tcgccgacgggctcggcatgcgcc 26 |||||| ||||||||||||||||| Sbjct: 110708 tcgccgccgggctcggcatgcgcc 110685
>ref|NM_013940.1| Homo sapiens olfactory receptor, family 10, subfamily H, member 1 (OR10H1), mRNA Length = 957 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 agctggaggtgggggaagac 187 |||||||||||||||||||| Sbjct: 74 agctggaggtgggggaagac 55
>emb|CT027659.2| Macaca mulatta chromosome 9 BAC CH250-288D8, complete sequence Length = 175570 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 gtgaagctggaggtggggga 183 |||||||||||||||||||| Sbjct: 58323 gtgaagctggaggtggggga 58342
>gb|AC092728.2| Canis familiaris clone RP81-237O17, complete sequence Length = 141578 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 gtgaagctggaggtggggga 183 |||||||||||||||||||| Sbjct: 50621 gtgaagctggaggtggggga 50640
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 gcgaggtcgtccaggccgcccagc 122 |||||||| ||||||||||||||| Sbjct: 3574640 gcgaggtcttccaggccgcccagc 3574617
>ref|XM_961411.1| PREDICTED: Tribolium castaneum similar to CG9914-PA, transcript variant 1 (LOC656318), mRNA Length = 1017 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 ccgacgggctcggcatgcgc 25 |||||||||||||||||||| Sbjct: 679 ccgacgggctcggcatgcgc 698
>ref|XM_970693.1| PREDICTED: Tribolium castaneum similar to CG9914-PA, transcript variant 2 (LOC656318), mRNA Length = 871 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 ccgacgggctcggcatgcgc 25 |||||||||||||||||||| Sbjct: 723 ccgacgggctcggcatgcgc 742
>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29 Length = 314100 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 gccgggtcgggttcgtcttc 43 |||||||||||||||||||| Sbjct: 278157 gccgggtcgggttcgtcttc 278176
>emb|CR937026.1|PT085P01 Pan troglodytes chromosome 11 BAC PTB-085P01, complete sequence Length = 218832 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 gtgaagctggaggtggggga 183 |||||||||||||||||||| Sbjct: 76944 gtgaagctggaggtggggga 76925
>gb|AC114267.2| Homo sapiens chromosome 19 clone LLNLR_222F11, complete sequence Length = 38629 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 agctggaggtgggggaagac 187 |||||||||||||||||||| Sbjct: 10452 agctggaggtgggggaagac 10433
>gb|AF257215.2| Brevibacterium sp. HCU cyclohexanone oxidation gene cluster 2, complete sequence Length = 11471 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 cgtcttcacgcaggcggtcg 56 |||||||||||||||||||| Sbjct: 5965 cgtcttcacgcaggcggtcg 5946
>ref|NM_176161.1| Drosophila melanogaster CG33007-PA (CG33007) mRNA, complete cds Length = 2068 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 ccgggtcgggttcgtcttca 44 |||||||||||||||||||| Sbjct: 1250 ccgggtcgggttcgtcttca 1269
>gb|AC153625.2| Mus musculus 6 BAC RP23-277O13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 175711 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 tgaagctggaggtgggggaa 184 |||||||||||||||||||| Sbjct: 6086 tgaagctggaggtgggggaa 6067
>tpg|BK004210.1| TPA: TPA_exp: Homo sapiens olfactory receptor OR19-27 gene, complete cds Length = 957 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 agctggaggtgggggaagac 187 |||||||||||||||||||| Sbjct: 74 agctggaggtgggggaagac 55
>gb|AC159480.5| Mus musculus 6 BAC RP24-470K4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 168310 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 tgaagctggaggtgggggaa 184 |||||||||||||||||||| Sbjct: 148814 tgaagctggaggtgggggaa 148795
>gb|AC006247.12|AC006247 Drosophila melanogaster, chromosome 2R, region 49E6-49F8, BAC clone BACR48I10, complete sequence Length = 163162 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 ccgggtcgggttcgtcttca 44 |||||||||||||||||||| Sbjct: 55034 ccgggtcgggttcgtcttca 55053
>dbj|AB126081.1| Homo sapiens genomic DNA, chromosome 21, PCR fragment for clone gap 2 (GAP2), MX1-D21S171 region, complete sequence Length = 27543 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 ccaggccgcccagctgcagg 128 |||||||||||||||||||| Sbjct: 15827 ccaggccgcccagctgcagg 15808
>gb|AC137492.2| Homo sapiens chromosome 16 clone LA16c-379F6, complete sequence Length = 36887 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 gcccagctgcaggcagaggg 135 |||||||||||||||||||| Sbjct: 32731 gcccagctgcaggcagaggg 32750
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 gaagctggaggtgggggaag 185 |||||||||||||||||||| Sbjct: 602889 gaagctggaggtgggggaag 602870
>gb|AE005021.1| Halobacterium sp. NRC-1 section 52 of 170 of the complete genome Length = 10128 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 ggtcgtccaggccgcccagc 122 |||||||||||||||||||| Sbjct: 9781 ggtcgtccaggccgcccagc 9800
>emb|AJ243257.1|SNA243257 Streptomyces natalensis plasmid pSNA1 including spda, kora, spdb2 and rep genes Length = 9367 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 cgaggtcgtccaggccgccc 119 |||||||||||||||||||| Sbjct: 4784 cgaggtcgtccaggccgccc 4803
>gb|AE003819.3| Drosophila melanogaster chromosome 2R, section 31 of 73 of the complete sequence Length = 221945 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 ccgggtcgggttcgtcttca 44 |||||||||||||||||||| Sbjct: 67413 ccgggtcgggttcgtcttca 67394
>gb|AC005471.1|AC005471 Drosophila melanogaster, chromosome 2R, region 49F11-49F13, P1 clone DS01087, complete sequence Length = 50714 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 ccgggtcgggttcgtcttca 44 |||||||||||||||||||| Sbjct: 6415 ccgggtcgggttcgtcttca 6396
>emb|AJ617740.1| Pseudomonas putida clc transposon Length = 105027 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 gcgaggtcgtccaggccgcccagc 122 |||||||| ||||||||||||||| Sbjct: 87623 gcgaggtcttccaggccgcccagc 87646
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 cgtcttcacgcaggcggtcg 56 |||||||||||||||||||| Sbjct: 3153420 cgtcttcacgcaggcggtcg 3153439
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 gaagctggaggtgggggaag 185 |||||||||||||||||||| Sbjct: 256672 gaagctggaggtgggggaag 256653
>gb|AC004510.1|AC004510 Homo sapiens chromosome 19, cosmid R30385, complete sequence Length = 39236 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 agctggaggtgggggaagac 187 |||||||||||||||||||| Sbjct: 2735 agctggaggtgggggaagac 2754 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,344,574 Number of Sequences: 3902068 Number of extensions: 1344574 Number of successful extensions: 111284 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 110332 Number of HSP's gapped (non-prelim): 952 length of query: 208 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 186 effective length of database: 17,147,199,772 effective search space: 3189379157592 effective search space used: 3189379157592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
