ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal20m21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein 327 6e-87
2emb|AJ234408.1|HVU234408 Hordeum vulgare partial mRNA; clone cMW... 291 3e-76
3emb|AJ234420.1|HVU234420 Hordeum vulgare partial mRNA; clone cMW... 194 6e-47
4ref|XM_476619.1| Oryza sativa (japonica cultivar-group), mRNA 174 6e-41
5dbj|AK120691.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 6e-41
6dbj|AK062172.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 6e-41
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 84 2e-13
8dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic D... 84 2e-13
9dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic D... 84 2e-13
10ref|XM_476620.1| Oryza sativa (japonica cultivar-group), mRNA 74 2e-10
11gb|AY310790.1| Nicotiana benthamiana clone 10-284 unknown mRNA 74 2e-10
12gb|AY310792.1| Nicotiana benthamiana clone 10-302 unknown mRNA 72 6e-10
13emb|X70088.1|NTNTPII10 N. tabacum mRNA for NtpII10 68 9e-09
14gb|AY348557.1| Trifolium pratense 10 kDa photosystem II polypept... 66 4e-08
15gb|AY146990.1| Xerophyta humilis photosystem II 10 kDa protein (... 64 1e-07
16gb|J03887.1|SPIPSBIA Spinach psbI gene encoding the 10kd polypep... 62 6e-07
17emb|X04401.1|STLS1R Potato mRNA for light inducible tissue-speci... 52 6e-04
18dbj|AP006696.1| Lotus japonicus genomic DNA, chromosome 3, clone... 52 6e-04
19dbj|AP006396.1| Lotus japonicus genomic DNA, chromosome 3, clone... 52 6e-04
20emb|Z75521.1|LESEND34 L.esculentum mRNA for photosystem II 10 kD... 50 0.002
21emb|X04753.1|STLS1G Potato light-inducible tissue-specific ST-LS... 44 0.14
22dbj|AB090880.1| Aster tripolium mRNA for thiol protease, complet... 44 0.14
23ref|NM_106555.2| Arabidopsis thaliana unknown protein AT1G79040 ... 42 0.54
24gb|AY096544.1| Arabidopsis thaliana putative photosystem II poly... 42 0.54
25gb|AY070103.1| Arabidopsis thaliana putative photosystem II poly... 42 0.54
26emb|BX815694.1|CNS0ABGL Arabidopsis thaliana Full-length cDNA Co... 42 0.54
27emb|BX813377.1|CNS0AC7S Arabidopsis thaliana Full-length cDNA Co... 42 0.54
28emb|BX813545.1|CNS0AC1I Arabidopsis thaliana Full-length cDNA Co... 42 0.54
29emb|BX815389.1|CNS0ABFG Arabidopsis thaliana Full-length cDNA Co... 42 0.54
30emb|BX818517.1|CNS0AB2P Arabidopsis thaliana Full-length cDNA Co... 42 0.54
31emb|BX817507.1|CNS0AAZC Arabidopsis thaliana Full-length cDNA Co... 42 0.54
32gb|AY084512.1| Arabidopsis thaliana clone 110067 mRNA, complete ... 42 0.54
33emb|AJ293729.1|ATH293729 Arabidopsis thaliana partial mRNA for 6... 42 0.54
34emb|X95987.1|LEPSIIPRE L.esculentum mRNA for 10kDa polypeptide p... 42 0.54
35gb|L31936.1|BNABIF11G Brassica campestris ssp. pekinensis (clone... 42 0.54
36gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete... 40 2.1
37gb|AC136905.6| Oryza sativa (japonica cultivar-group) chromosome... 40 2.1
38gb|AC102825.6| Mus musculus chromosome 15, clone RP24-227B12, co... 40 2.1
39gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome... 40 2.1
40gb|AC093768.3| Homo sapiens BAC clone RP11-113G13 from 4, comple... 40 2.1
41gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 2.1
42dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.1
43dbj|AK119422.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.1
44gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 2.1
45gb|AE006204.1| Pasteurella multocida subsp. multocida str. Pm70 ... 38 8.4
46gb|AC113187.6| Homo sapiens chromosome 15, clone RP11-924B20, co... 38 8.4
47gb|AC022710.10|AC022710 Homo sapiens chromosome 15, clone RP11-9... 38 8.4
48gb|DQ217943.1| Homo sapiens ADAM metallopeptidase with thrombosp... 38 8.4 
>emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein
          Length = 575

 Score =  327 bits (165), Expect = 6e-87
 Identities = 170/172 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agactgcccaaccctacgggcctggtggtggagtggcgttcaaggaaggcgtcgatgcgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 agactgcccaaccctacgggcctggtggtggagtggcgttcaaggaaggcgtcgatgcgt 222

                                                                       
Query: 61  ctggaagggtagccaaggggaagggtgtttaccagtttgccgacaagtatggagcaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 ctggaagggtagccaaggggaagggtgtttaccagtttgccgacaagtatggagcaaatg 282

                                                               
Query: 121 ttgatgggtacagccctatatacacaccataagagtggtctncaagtggcga 172
           ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 283 ttgatgggtacagccctatatacacaccagaagagtggtctccaagtggcga 334
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>emb|AJ234408.1|HVU234408 Hordeum vulgare partial mRNA; clone cMWG0658
          Length = 377

 Score =  291 bits (147), Expect = 3e-76
 Identities = 168/174 (96%), Gaps = 2/174 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agactgcccaaccctacgggcctggtggtggagtggcgttcaaggaaggcgtcgatgcgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 agactgcccaaccctacgggcctggtggtggagtggcgttcaaggaaggcgtcgatgcgt 209

                                                                       
Query: 61  ct-ggaagggtagccaaggggaagggtgtttaccagtttg-ccgacaagtatggagcaaa 118
           || |||||||||||||||||||||||||||||||||||   |||||||||||||||||||
Sbjct: 210 cttggaagggtagccaaggggaagggtgtttaccagtthdnccgacaagtatggagcaaa 269

                                                                 
Query: 119 tgttgatgggtacagccctatatacacaccataagagtggtctncaagtggcga 172
           ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 270 tgttgatgggtacagccctatatacacaccagaagagtggtctccaagtggcga 323
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>emb|AJ234420.1|HVU234420 Hordeum vulgare partial mRNA; clone cMWG0681
          Length = 247

 Score =  194 bits (98), Expect = 6e-47
 Identities = 98/98 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agactgcccaaccctacgggcctggtggtggagtggcgttcaaggaaggcgtcgatgcgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 agactgcccaaccctacgggcctggtggtggagtggcgttcaaggaaggcgtcgatgcgt 209

                                                 
Query: 61  ctggaagggtagccaaggggaagggtgtttaccagttt 98
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ctggaagggtagccaaggggaagggtgtttaccagttt 247
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>ref|XM_476619.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 620

 Score =  174 bits (88), Expect = 6e-41
 Identities = 141/159 (88%)
 Strand = Plus / Plus

                                                                       
Query: 7   cccaaccctacgggcctggtggtggagtggcgttcaaggaaggcgtcgatgcgtctggaa 66
           |||| ||||| ||||||| ||| ||||||| |||||||||||| || ||||| |||||||
Sbjct: 209 cccagccctatgggcctgctggaggagtggtgttcaaggaaggtgttgatgcatctggaa 268

                                                                       
Query: 67  gggtagccaaggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatg 126
           ||||||||||||| |||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct: 269 gggtagccaagggaaagggtctttaccagttttccaacaagtatggagcaaatgttgatg 328

                                                  
Query: 127 ggtacagccctatatacacaccataagagtggtctncaa 165
           |||||||||| ||||| || ||| |||| |||||| |||
Sbjct: 329 ggtacagcccaatatataccccagaagaatggtcttcaa 367
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>dbj|AK120691.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169L11, full
           insert sequence
          Length = 777

 Score =  174 bits (88), Expect = 6e-41
 Identities = 141/159 (88%)
 Strand = Plus / Plus

                                                                       
Query: 7   cccaaccctacgggcctggtggtggagtggcgttcaaggaaggcgtcgatgcgtctggaa 66
           |||| ||||| ||||||| ||| ||||||| |||||||||||| || ||||| |||||||
Sbjct: 210 cccagccctatgggcctgctggaggagtggtgttcaaggaaggtgttgatgcatctggaa 269

                                                                       
Query: 67  gggtagccaaggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatg 126
           ||||||||||||| |||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct: 270 gggtagccaagggaaagggtctttaccagttttccaacaagtatggagcaaatgttgatg 329

                                                  
Query: 127 ggtacagccctatatacacaccataagagtggtctncaa 165
           |||||||||| ||||| || ||| |||| |||||| |||
Sbjct: 330 ggtacagcccaatatataccccagaagaatggtcttcaa 368
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>dbj|AK062172.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C07, full
           insert sequence
          Length = 620

 Score =  174 bits (88), Expect = 6e-41
 Identities = 141/159 (88%)
 Strand = Plus / Plus

                                                                       
Query: 7   cccaaccctacgggcctggtggtggagtggcgttcaaggaaggcgtcgatgcgtctggaa 66
           |||| ||||| ||||||| ||| ||||||| |||||||||||| || ||||| |||||||
Sbjct: 209 cccagccctatgggcctgctggaggagtggtgttcaaggaaggtgttgatgcatctggaa 268

                                                                       
Query: 67  gggtagccaaggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatg 126
           ||||||||||||| |||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct: 269 gggtagccaagggaaagggtctttaccagttttccaacaagtatggagcaaatgttgatg 328

                                                  
Query: 127 ggtacagccctatatacacaccataagagtggtctncaa 165
           |||||||||| ||||| || ||| |||| |||||| |||
Sbjct: 329 ggtacagcccaatatataccccagaagaatggtcttcaa 367
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                         
Query: 76      aggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacag 133
               |||| |||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 2487079 agggaaagggtctttaccagttttccaacaagtatggagcaaatgttgatgggtacag 2487136



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                           
Query: 18      gggcctggtggtggagtggcgttcaaggaaggcgtcgatgcgtctggaagggtagccaag 77
               ||||||| ||| ||||||| |||||||||||| || ||||| ||||||||||||||||||
Sbjct: 2486935 gggcctgctggaggagtggtgttcaaggaaggtgttgatgcatctggaagggtagccaag 2486994

                
Query: 78      g 78
               |
Sbjct: 2486995 g 2486995



 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                         
Query: 76      aggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacag 133
               ||||||| || || ||||||||||||  |||||||||||| ||||||||||| |||||
Sbjct: 2489696 aggggaaaggggtctaccagtttgccagcaagtatggagctaatgttgatggatacag 2489753
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>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0022E03
          Length = 163032

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                       
Query: 76    aggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacag 133
             |||| |||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 52059 agggaaagggtctttaccagttttccaacaagtatggagcaaatgttgatgggtacag 52116



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                         
Query: 18    gggcctggtggtggagtggcgttcaaggaaggcgtcgatgcgtctggaagggtagccaag 77
             ||||||| ||| ||||||| |||||||||||| || ||||| ||||||||||||||||||
Sbjct: 51915 gggcctgctggaggagtggtgttcaaggaaggtgttgatgcatctggaagggtagccaag 51974

              
Query: 78    g 78
             |
Sbjct: 51975 g 51975



 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                       
Query: 76    aggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacag 133
             ||||||| || || ||||||||||||  |||||||||||| ||||||||||| |||||
Sbjct: 54676 aggggaaaggggtctaccagtttgccagcaagtatggagctaatgttgatggatacag 54733
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>dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1470_H06
          Length = 62794

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                       
Query: 76    aggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacag 133
             |||| |||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 60826 agggaaagggtctttaccagttttccaacaagtatggagcaaatgttgatgggtacag 60883



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                         
Query: 18    gggcctggtggtggagtggcgttcaaggaaggcgtcgatgcgtctggaagggtagccaag 77
             ||||||| ||| ||||||| |||||||||||| || ||||| ||||||||||||||||||
Sbjct: 60682 gggcctgctggaggagtggtgttcaaggaaggtgttgatgcatctggaagggtagccaag 60741

              
Query: 78    g 78
             |
Sbjct: 60742 g 60742
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>ref|XM_476620.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 405

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 61/69 (88%)
 Strand = Plus / Plus

                                                                       
Query: 74  caaggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacag 133
           ||||||||| || || ||||||||||||  |||||||||||| ||||||||||| |||||
Sbjct: 198 caaggggaaaggggtctaccagtttgccagcaagtatggagctaatgttgatggatacag 257

                    
Query: 134 ccctatata 142
           ||| |||||
Sbjct: 258 cccaatata 266
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>gb|AY310790.1| Nicotiana benthamiana clone 10-284 unknown mRNA
          Length = 373

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                       
Query: 73  ccaaggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtaca 132
           ||||||| |||||||||||||| || |  ||||| |||||||||||||||||||| ||||
Sbjct: 19  ccaagggaaagggtgtttaccaattngttgacaaatatggagcaaatgttgatggataca 78

               
Query: 133 gccc 136
           ||||
Sbjct: 79  gccc 82
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>gb|AY310792.1| Nicotiana benthamiana clone 10-302 unknown mRNA
          Length = 438

 Score = 71.9 bits (36), Expect = 6e-10
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                       
Query: 73  ccaaggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtaca 132
           ||||||| |||||||||||||| || |  ||||| |||||||||||||||||||| ||||
Sbjct: 83  ccaagggaaagggtgtttaccaattcgttgacaaatatggagcaaatgttgatggataca 142

               
Query: 133 gccc 136
           ||||
Sbjct: 143 gccc 146
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>emb|X70088.1|NTNTPII10 N. tabacum mRNA for NtpII10
          Length = 639

 Score = 67.9 bits (34), Expect = 9e-09
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                       
Query: 75  aaggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagc 134
           ||||| |||||||||||||| || |  ||||| |||||||||||||||||||| ||||||
Sbjct: 230 aagggaaagggtgtttaccaattcgttgacaaatatggagcaaatgttgatggatacagc 289

             
Query: 135 cc 136
           ||
Sbjct: 290 cc 291
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>gb|AY348557.1| Trifolium pratense 10 kDa photosystem II polypeptide mRNA, complete
           cds
          Length = 584

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                       
Query: 75  aaggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagc 134
           ||||| |||||||||||||||||||  ||||| ||||| || ||||||||||| ||||| 
Sbjct: 212 aagggaaagggtgtttaccagtttgtggacaaatatggtgctaatgttgatggatacagt 271

                
Query: 135 cctat 139
           |||||
Sbjct: 272 cctat 276
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>gb|AY146990.1| Xerophyta humilis photosystem II 10 kDa protein (PsbR) mRNA,
           complete cds
          Length = 698

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 79/95 (83%)
 Strand = Plus / Plus

                                                                       
Query: 75  aaggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagc 134
           ||||| |||||||| ||||| ||||  ||||| ||||| |||||||||||||| ||||||
Sbjct: 290 aagggaaagggtgtctaccaatttgtggacaaatatggtgcaaatgttgatggctacagc 349

                                              
Query: 135 cctatatacacaccataagagtggtctncaagtgg 169
           || || ||| ||||| | || |||||| | |||||
Sbjct: 350 ccgatctactcaccagacgaatggtctcctagtgg 384
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>gb|J03887.1|SPIPSBIA Spinach psbI gene encoding the 10kd polypeptide of photosystem II,
           complete cds
          Length = 590

 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 75/87 (86%), Gaps = 2/87 (2%)
 Strand = Plus / Plus

                                                                       
Query: 48  ggcgtcgatgcgtctggaagggtagccaagggg-aagggtgtttaccagtttgccgacaa 106
           ||||| ||| |||||||||||  |||||| ||| |||||||||||||| ||||  |||||
Sbjct: 207 ggcgttgattcgtctggaagga-agccaacgggcaagggtgtttaccaatttgttgacaa 265

                                      
Query: 107 gtatggagcaaatgttgatgggtacag 133
           |||||| || ||||||||||| |||||
Sbjct: 266 gtatggtgccaatgttgatggttacag 292
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>emb|X04401.1|STLS1R Potato mRNA for light inducible tissue-specific ST-LS1 gene
          Length = 560

 Score = 52.0 bits (26), Expect = 6e-04
 Identities = 79/97 (81%)
 Strand = Plus / Plus

                                                                       
Query: 73  ccaaggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtaca 132
           ||||||| |||||||| ||||| | ||  ||||| |||||||| ||||||||||| ||||
Sbjct: 209 ccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggataca 268

                                                
Query: 133 gccctatatacacaccataagagtggtctncaagtgg 169
           | || || ||||   || | ||||||||| |||||||
Sbjct: 269 gtcccatctacaacacagatgagtggtctccaagtgg 305
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>dbj|AP006696.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT17N21, TM0403,
             complete sequence
          Length = 97807

 Score = 52.0 bits (26), Expect = 6e-04
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                       
Query: 76    aggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacag 133
             |||| |||||||||||||||| ||  |||||||| || || ||||||||||| |||||
Sbjct: 84296 agggaaagggtgtttaccagtatgtggacaagtacggtgctaatgttgatggatacag 84239
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>dbj|AP006396.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT26P21, TM0279b,
             complete sequence
          Length = 28275

 Score = 52.0 bits (26), Expect = 6e-04
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                       
Query: 76    aggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacag 133
             |||| |||||||||||||||| ||  |||||||| || || ||||||||||| |||||
Sbjct: 14668 agggaaagggtgtttaccagtatgtggacaagtacggtgctaatgttgatggatacag 14725
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>emb|Z75521.1|LESEND34 L.esculentum mRNA for photosystem II 10 kD protein
          Length = 540

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                       
Query: 73  ccaaggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtaca 132
           ||||||| |||||||| ||||| | ||  ||||| |||||||| ||||||||||| ||||
Sbjct: 186 ccaagggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggataca 245

            
Query: 133 g 133
           |
Sbjct: 246 g 246
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>emb|X04753.1|STLS1G Potato light-inducible tissue-specific ST-LS1 gene
          Length = 3699

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                      
Query: 76   aggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacag 133
            |||| |||||||| ||||| | ||  ||||| |||||||| ||||||||||| |||||
Sbjct: 2835 agggaaagggtgtgtaccaatatgttgacaaatatggagctaatgttgatggatacag 2892
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>dbj|AB090880.1| Aster tripolium mRNA for thiol protease, complete cds
          Length = 910

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 75  aaggggaagggtgtttaccagtttgccgacaagtatgg 112
           |||||||||||||| ||||| ||||  |||||||||||
Sbjct: 318 aaggggaagggtgtctaccaatttgttgacaagtatgg 355
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>ref|NM_106555.2| Arabidopsis thaliana unknown protein AT1G79040 mRNA, complete cds
          Length = 647

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                       
Query: 84  ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 143
           ||||||||| |||  | ||||||||||||||| || || ||||| ||||| ||||| |||
Sbjct: 293 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 352

            
Query: 144 a 144
           |
Sbjct: 353 a 353
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>gb|AY096544.1| Arabidopsis thaliana putative photosystem II polypeptide
           (At1g79040) mRNA, complete cds
          Length = 454

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                       
Query: 84  ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 143
           ||||||||| |||  | ||||||||||||||| || || ||||| ||||| ||||| |||
Sbjct: 226 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 285

            
Query: 144 a 144
           |
Sbjct: 286 a 286
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>gb|AY070103.1| Arabidopsis thaliana putative photosystem II polypeptide protein
           (At1g79040) mRNA, complete cds
          Length = 645

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                       
Query: 84  ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 143
           ||||||||| |||  | ||||||||||||||| || || ||||| ||||| ||||| |||
Sbjct: 276 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 335

            
Query: 144 a 144
           |
Sbjct: 336 a 336
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>emb|BX815694.1|CNS0ABGL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS85ZA04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 580

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                       
Query: 84  ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 143
           ||||||||| |||  | ||||||||||||||| || || ||||| ||||| ||||| |||
Sbjct: 259 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 318

            
Query: 144 a 144
           |
Sbjct: 319 a 319
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>emb|BX813377.1|CNS0AC7S Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB13ZE07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 580

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                       
Query: 84  ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 143
           ||||||||| |||  | ||||||||||||||| || || ||||| ||||| ||||| |||
Sbjct: 259 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 318

            
Query: 144 a 144
           |
Sbjct: 319 a 319
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>emb|BX813545.1|CNS0AC1I Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB23ZD11 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 576

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                       
Query: 84  ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 143
           ||||||||| |||  | ||||||||||||||| || || ||||| ||||| ||||| |||
Sbjct: 255 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 314

            
Query: 144 a 144
           |
Sbjct: 315 a 315
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>emb|BX815389.1|CNS0ABFG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS56ZH04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 580

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                       
Query: 84  ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 143
           ||||||||| |||  | ||||||||||||||| || || ||||| ||||| ||||| |||
Sbjct: 259 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 318

            
Query: 144 a 144
           |
Sbjct: 319 a 319
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>emb|BX818517.1|CNS0AB2P Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL83ZE09 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 579

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                       
Query: 84  ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 143
           ||||||||| |||  | ||||||||||||||| || || ||||| ||||| ||||| |||
Sbjct: 258 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 317

            
Query: 144 a 144
           |
Sbjct: 318 a 318
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>emb|BX817507.1|CNS0AAZC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL27ZF07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 588

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                       
Query: 84  ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 143
           ||||||||| |||  | ||||||||||||||| || || ||||| ||||| ||||| |||
Sbjct: 261 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 320

            
Query: 144 a 144
           |
Sbjct: 321 a 321
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>gb|AY084512.1| Arabidopsis thaliana clone 110067 mRNA, complete sequence
          Length = 611

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                       
Query: 84  ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 143
           ||||||||| |||  | ||||||||||||||| || || ||||| ||||| ||||| |||
Sbjct: 293 ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 352

            
Query: 144 a 144
           |
Sbjct: 353 a 353
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>emb|AJ293729.1|ATH293729 Arabidopsis thaliana partial mRNA for 60S ribosomal protein L24 (RL24
            gene)
          Length = 1310

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                        
Query: 84   ggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtacagccctatatac 143
            ||||||||| |||  | ||||||||||||||| || || ||||| ||||| ||||| |||
Sbjct: 968  ggtgtttacaagtacgtcgacaagtatggagctaacgtcgatggatacagtcctatttac 1027

             
Query: 144  a 144
            |
Sbjct: 1028 a 1028
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>emb|X95987.1|LEPSIIPRE L.esculentum mRNA for 10kDa polypeptide precursor of photosystem II
          Length = 632

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                       
Query: 73  ccaaggggaagggtgtttaccagtttgccgacaagtatggagcaaatgttgatgggtaca 132
           ||||||| |||||||| ||||| | ||  ||||| ||||| || ||||||||||| ||||
Sbjct: 209 ccaagggaaagggtgtgtaccaatatgttgacaaatatggggctaatgttgatggataca 268

            
Query: 133 g 133
           |
Sbjct: 269 g 269
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>gb|L31936.1|BNABIF11G Brassica campestris ssp. pekinensis (clone bif11) photosystem II
           10kDa polypeptide mRNA, complete cds
          Length = 551

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                            
Query: 96  tttgccgacaagtatggagcaaatgttgatgggtacagccctatataca 144
           |||| |||||||||||| || || |||||||| ||||| ||||| ||||
Sbjct: 253 tttgtcgacaagtatggtgcgaacgttgatggatacagtcctatctaca 301
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>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 107     gtatggagcaaatgttgatg 126
               ||||||||||||||||||||
Sbjct: 1176145 gtatggagcaaatgttgatg 1176164
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>gb|AC136905.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0064E13, complete sequence
          Length = 150158

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    tggcgttcaaggaaggcgtc 53
             ||||||||||||||||||||
Sbjct: 82005 tggcgttcaaggaaggcgtc 82024
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>gb|AC102825.6| Mus musculus chromosome 15, clone RP24-227B12, complete sequence
          Length = 153145

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    gtagccaaggggaagggtgt 88
             ||||||||||||||||||||
Sbjct: 35644 gtagccaaggggaagggtgt 35663
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>gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0038B22,
              complete sequence
          Length = 177557

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 34     tggcgttcaaggaaggcgtc 53
              ||||||||||||||||||||
Sbjct: 117735 tggcgttcaaggaaggcgtc 117754
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>gb|AC093768.3| Homo sapiens BAC clone RP11-113G13 from 4, complete sequence
          Length = 187624

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    gccaaggggaagggtgttta 91
             ||||||||||||||||||||
Sbjct: 65296 gccaaggggaagggtgttta 65315
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 39      ttcaaggaaggcgtcgatgc 58
               ||||||||||||||||||||
Sbjct: 2504769 ttcaaggaaggcgtcgatgc 2504750
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 34       tggcgttcaaggaaggcgtc 53
                ||||||||||||||||||||
Sbjct: 20071070 tggcgttcaaggaaggcgtc 20071089



 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 34       tggcgttcaaggaaggcgtc 53
                ||||||||||||||||||||
Sbjct: 19940668 tggcgttcaaggaaggcgtc 19940687
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>dbj|AK119422.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-132-H02, full
           insert sequence
          Length = 3198

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 34  tggcgttcaaggaaggcgtc 53
           ||||||||||||||||||||
Sbjct: 221 tggcgttcaaggaaggcgtc 240
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 34       tggcgttcaaggaaggcgtc 53
                ||||||||||||||||||||
Sbjct: 20357746 tggcgttcaaggaaggcgtc 20357765



 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 34       tggcgttcaaggaaggcgtc 53
                ||||||||||||||||||||
Sbjct: 20225647 tggcgttcaaggaaggcgtc 20225666
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>gb|AE006204.1| Pasteurella multocida subsp. multocida str. Pm70 section 171 of 204
            of the complete genome
          Length = 13594

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 107  gtatggagcaaatgttgat 125
            |||||||||||||||||||
Sbjct: 3555 gtatggagcaaatgttgat 3537
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>gb|AC113187.6| Homo sapiens chromosome 15, clone RP11-924B20, complete sequence
          Length = 205998

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 79    ggaagggtgtttaccagtt 97
             |||||||||||||||||||
Sbjct: 23896 ggaagggtgtttaccagtt 23914
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>gb|AC022710.10|AC022710 Homo sapiens chromosome 15, clone RP11-90E5, complete sequence
          Length = 186517

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 79     ggaagggtgtttaccagtt 97
              |||||||||||||||||||
Sbjct: 107817 ggaagggtgtttaccagtt 107835
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>gb|DQ217943.1| Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif 17
              (ADAMTS17) gene, complete cds; and 5S ribosomal RNA gene,
              complete sequence
          Length = 371157

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 79     ggaagggtgtttaccagtt 97
              |||||||||||||||||||
Sbjct: 206225 ggaagggtgtttaccagtt 206207


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,250,359
Number of Sequences: 3902068
Number of extensions: 1250359
Number of successful extensions: 75364
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75183
Number of HSP's gapped (non-prelim): 178
length of query: 172
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 150
effective length of database: 17,147,199,772
effective search space: 2572079965800
effective search space used: 2572079965800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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