ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal20m12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY123422.1| Triticum aestivum putative Rieske Fe-S precursor protein mRNA, complete cds Length = 866 Score = 301 bits (152), Expect = 4e-79 Identities = 185/195 (94%), Gaps = 1/195 (0%) Strand = Plus / Plus Query: 1 gctcgctcgctcgatcgtcctctccgccctgtagcagccngcc-ccatggcctccaccgc 59 |||||||||||||||||||||| |||||||| ||||||| ||| |||||||||| ||||| Sbjct: 6 gctcgctcgctcgatcgtcctccccgccctgcagcagccagccaccatggcctctaccgc 65 Query: 60 gctctccaccgcctccaaccccacccagctctgccgaacccgtgcgagctcgctatgcaa 119 ||||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||||| Sbjct: 66 gctctccaccgcctccaaccctacccagctctgccggacccgtgcaagctcgctgtgcaa 125 Query: 120 gcccgtcaagggcctgggcttcggccgggagcgcatcccgaggaacatcacatgcatggc 179 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 126 gcccgtcaagggcctgggcttcggccgggagcgcatcccgaggaacatcacctgcatggc 185 Query: 180 cggcagcatctccgc 194 ||||||||||||||| Sbjct: 186 cggcagcatctccgc 200
>dbj|AK071634.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100K03, full insert sequence Length = 1082 Score = 115 bits (58), Expect = 5e-23 Identities = 105/120 (87%), Gaps = 3/120 (2%) Strand = Plus / Plus Query: 44 ccatggcctccaccgcgctctccaccgcctccaaccccacccagctctgccgaacccgtg 103 ||||||||||||||||||||||||||||||||||||| || ||||| ||| | | || | Sbjct: 52 ccatggcctccaccgcgctctccaccgcctccaaccctactcagctgtgcaggtctcgcg 111 Query: 104 cgagctcgctatgcaagcccgtcaagggcctgggcttcggccgggagcgcatcccgagga 163 | |||||| |||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 112 c---ctcgctgggcaagcccgtcaagggcctgggcttcggccgggagcgcgtgccgagga 168
>gb|AF093631.1|AF093631 Oryza sativa Rieske Fe-S precursor protein (RISP) mRNA, complete cds Length = 919 Score = 115 bits (58), Expect = 5e-23 Identities = 105/120 (87%), Gaps = 3/120 (2%) Strand = Plus / Plus Query: 44 ccatggcctccaccgcgctctccaccgcctccaaccccacccagctctgccgaacccgtg 103 ||||||||||||||||||||||||||||||||||||| || ||||| ||| | | || | Sbjct: 40 ccatggcctccaccgcgctctccaccgcctccaaccctactcagctgtgcaggtctcgcg 99 Query: 104 cgagctcgctatgcaagcccgtcaagggcctgggcttcggccgggagcgcatcccgagga 163 | |||||| |||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 100 c---ctcgctgggcaagcccgtcaagggcctgggcttcggccgggagcgcgtgccgagga 156
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 79.8 bits (40), Expect = 3e-12 Identities = 46/48 (95%) Strand = Plus / Plus Query: 116 gcaagcccgtcaagggcctgggcttcggccgggagcgcatcccgagga 163 |||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 22131963 gcaagcccgtcaagggcctgggcttcggccgggagcgcgtgccgagga 22132010 Score = 75.8 bits (38), Expect = 4e-11 Identities = 47/50 (94%) Strand = Plus / Plus Query: 44 ccatggcctccaccgcgctctccaccgcctccaaccccacccagctctgc 93 ||||||||||||||||||||||||||||||||||||| || ||| ||||| Sbjct: 22130878 ccatggcctccaccgcgctctccaccgcctccaaccctactcaggtctgc 22130927
>dbj|AP005125.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0058I18 Length = 151453 Score = 79.8 bits (40), Expect = 3e-12 Identities = 46/48 (95%) Strand = Plus / Plus Query: 116 gcaagcccgtcaagggcctgggcttcggccgggagcgcatcccgagga 163 |||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 85619 gcaagcccgtcaagggcctgggcttcggccgggagcgcgtgccgagga 85666 Score = 75.8 bits (38), Expect = 4e-11 Identities = 47/50 (94%) Strand = Plus / Plus Query: 44 ccatggcctccaccgcgctctccaccgcctccaaccccacccagctctgc 93 ||||||||||||||||||||||||||||||||||||| || ||| ||||| Sbjct: 84534 ccatggcctccaccgcgctctccaccgcctccaaccctactcaggtctgc 84583
>gb|BT016255.1| Zea mays clone Contig88 mRNA sequence Length = 998 Score = 52.0 bits (26), Expect = 6e-04 Identities = 32/34 (94%) Strand = Plus / Plus Query: 58 gcgctctccaccgcctccaaccccacccagctct 91 ||||||||||||||| |||| ||||||||||||| Sbjct: 88 gcgctctccaccgccgccaatcccacccagctct 121
>gb|AY104934.1| Zea mays PCO071754 mRNA sequence Length = 1058 Score = 52.0 bits (26), Expect = 6e-04 Identities = 32/34 (94%) Strand = Plus / Plus Query: 58 gcgctctccaccgcctccaaccccacccagctct 91 ||||||||||||||| |||| ||||||||||||| Sbjct: 147 gcgctctccaccgccgccaatcccacccagctct 180
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 48.1 bits (24), Expect = 0.010 Identities = 30/32 (93%) Strand = Plus / Plus Query: 42 ccccatggcctccaccgcgctctccaccgcct 73 ||||||||| ||||||||||||||| |||||| Sbjct: 27035129 ccccatggcttccaccgcgctctcctccgcct 27035160
>dbj|AP003284.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0671D01 Length = 163006 Score = 48.1 bits (24), Expect = 0.010 Identities = 30/32 (93%) Strand = Plus / Plus Query: 42 ccccatggcctccaccgcgctctccaccgcct 73 ||||||||| ||||||||||||||| |||||| Sbjct: 93960 ccccatggcttccaccgcgctctcctccgcct 93991
>dbj|AB022674.1| Oryza sativa (japonica cultivar-group) rpl12-2 gene for chloroplast ribosomal protein L12, complete cds Length = 2075 Score = 48.1 bits (24), Expect = 0.010 Identities = 30/32 (93%) Strand = Plus / Plus Query: 42 ccccatggcctccaccgcgctctccaccgcct 73 ||||||||| ||||||||||||||| |||||| Sbjct: 1175 ccccatggcttccaccgcgctctcctccgcct 1206
>gb|AF010581.1|AF010581 Oryza sativa ribosomal protein L12 homolog mRNA, partial cds Length = 535 Score = 46.1 bits (23), Expect = 0.039 Identities = 29/31 (93%) Strand = Plus / Plus Query: 43 cccatggcctccaccgcgctctccaccgcct 73 |||||||| ||||||||||||||| |||||| Sbjct: 59 cccatggcttccaccgcgctctcctccgcct 89
>gb|AC124390.4| Mus musculus BAC clone RP24-434C11 from chromosome 12, complete sequence Length = 162663 Score = 42.1 bits (21), Expect = 0.62 Identities = 21/21 (100%) Strand = Plus / Minus Query: 72 ctccaaccccacccagctctg 92 ||||||||||||||||||||| Sbjct: 300 ctccaaccccacccagctctg 280
>emb|AL035665.32|HS644L1 Human DNA sequence from clone RP4-644L1 on chromosome 20q12 Contains the MAFB gene for v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian), a novel gene and two CpG islands, complete sequence Length = 145593 Score = 42.1 bits (21), Expect = 0.62 Identities = 24/25 (96%) Strand = Plus / Minus Query: 70 gcctccaaccccacccagctctgcc 94 ||||||||||||||||||| ||||| Sbjct: 4928 gcctccaaccccacccagccctgcc 4904
>gb|AC156643.2| Mus musculus BAC clone RP23-192O3 from chromosome 12, complete sequence Length = 197420 Score = 42.1 bits (21), Expect = 0.62 Identities = 21/21 (100%) Strand = Plus / Plus Query: 72 ctccaaccccacccagctctg 92 ||||||||||||||||||||| Sbjct: 104844 ctccaaccccacccagctctg 104864
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 0.62 Identities = 21/21 (100%) Strand = Plus / Plus Query: 54 caccgcgctctccaccgcctc 74 ||||||||||||||||||||| Sbjct: 2450442 caccgcgctctccaccgcctc 2450462
>emb|CT009609.1| Desulfococcus multivorans vrl island Length = 89210 Score = 42.1 bits (21), Expect = 0.62 Identities = 24/25 (96%) Strand = Plus / Minus Query: 133 ctgggcttcggccgggagcgcatcc 157 |||||||||| |||||||||||||| Sbjct: 5593 ctgggcttcgaccgggagcgcatcc 5569
>ref|XM_529565.1| PREDICTED: Pan troglodytes LOC452570 (LOC452570), mRNA Length = 1461 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 cacatgcatggccggcagca 187 |||||||||||||||||||| Sbjct: 1177 cacatgcatggccggcagca 1158
>ref|NM_192495.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 558 Score = 40.1 bits (20), Expect = 2.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 46 atggcctccaccgcgctctccaccgcct 73 ||||| ||||||||||||||| |||||| Sbjct: 1 atggcttccaccgcgctctcctccgcct 28
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 45 catggcctccaccgcgctctccac 68 |||||||||||| ||||||||||| Sbjct: 2843779 catggcctccacggcgctctccac 2843802 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 agcccgtcaagggcctgggc 138 |||||||||||||||||||| Sbjct: 1548385 agcccgtcaagggcctgggc 1548404
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 agggcctgggcttcggccgg 147 |||||||||||||||||||| Sbjct: 540974 agggcctgggcttcggccgg 540955
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 agggcctgggcttcggccgg 147 |||||||||||||||||||| Sbjct: 671285 agggcctgggcttcggccgg 671266
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 ctccaccgcgctctccaccgcctc 74 ||||||||||||||||| |||||| Sbjct: 4778359 ctccaccgcgctctccagcgcctc 4778382
>emb|AL355861.19| Human DNA sequence from clone RP11-567J24 on chromosome 10 Contains the 5' end of a novel gene, the PRDX3 gene for peroxiredoxin 3 (AOP1, MER5, AOP-1, SP-22), the 5' end of the GPRK5 gene for G protein-coupled receptor kinase 5 (GRK5), a novel gene and four CpG islands, complete sequence Length = 168528 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 ccaccgcctccaaccccacc 84 |||||||||||||||||||| Sbjct: 162786 ccaccgcctccaaccccacc 162805
>gb|AC009004.6| Homo sapiens chromosome 19 clone LLNLR-291B11, complete sequence Length = 39608 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 cctccaaccccacccagctc 90 |||||||||||||||||||| Sbjct: 1207 cctccaaccccacccagctc 1226
>gb|AC024585.6| Homo sapiens chromosome 19 clone LLNLF-194E9, complete sequence Length = 26400 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 cctccaaccccacccagctc 90 |||||||||||||||||||| Sbjct: 5912 cctccaaccccacccagctc 5893
>gb|AC084658.1|CBRG46L07 Caenorhabditis briggsae cosmid G46L07, complete sequence Length = 35227 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 gctcgctcgatcgtcctctc 24 |||||||||||||||||||| Sbjct: 14650 gctcgctcgatcgtcctctc 14631
>ref|XM_510998.1| PREDICTED: Pan troglodytes LOC454126 (LOC454126), mRNA Length = 2335 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 51 ctccaccgcgctctccaccgcct 73 |||||||| |||||||||||||| Sbjct: 1802 ctccaccgagctctccaccgcct 1824
>gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 9, complete sequence Length = 1178688 Score = 38.2 bits (19), Expect = 9.6 Identities = 25/27 (92%) Strand = Plus / Minus Query: 49 gcctccaccgcgctctccaccgcctcc 75 |||||||||||| ||||| |||||||| Sbjct: 833833 gcctccaccgcggtctccgccgcctcc 833807
>ref|XM_417551.1| PREDICTED: Gallus gallus similar to PR domain containing 16 isoform 1; transcription factor MEL1; MDS1/EVI1-like gene; PR-domain zinc finger protein 16 (LOC419388), mRNA Length = 5331 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 ccagctctgccgaacccgt 102 ||||||||||||||||||| Sbjct: 1501 ccagctctgccgaacccgt 1483
>ref|XM_592995.2| PREDICTED: Bos taurus similar to neuronal calcium-binding protein 2 (LOC515049), mRNA Length = 1446 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 46 atggcctccaccgcgctctccac 68 |||||||||||||| |||||||| Sbjct: 395 atggcctccaccgcactctccac 373
>ref|XM_656711.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN4199.2), mRNA Length = 1101 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 tcgtcctctccgccctgta 33 ||||||||||||||||||| Sbjct: 524 tcgtcctctccgccctgta 542
>ref|NM_019065.2| Homo sapiens EF-hand calcium binding protein 2 (EFCBP2), mRNA Length = 1636 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 46 atggcctccaccgcgctctccac 68 |||||||||||||| |||||||| Sbjct: 589 atggcctccaccgcactctccac 567
>ref|NM_001297.1| Homo sapiens cyclic nucleotide gated channel beta 1 (CNGB1), mRNA Length = 4382 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 51 ctccaccgcgctctccaccgcct 73 |||||||| |||||||||||||| Sbjct: 3636 ctccaccgagctctccaccgcct 3658
>gb|AC135292.2| Mus musculus BAC clone RP23-153N21 from chromosome 15, complete sequence Length = 206967 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 108 ctcgctatgcaagcccgtc 126 ||||||||||||||||||| Sbjct: 63237 ctcgctatgcaagcccgtc 63219
>gb|AC004837.1| Homo sapiens PAC clone RP4-570D2 from 7, complete sequence Length = 135837 Score = 38.2 bits (19), Expect = 9.6 Identities = 25/27 (92%) Strand = Plus / Plus Query: 59 cgctctccaccgcctccaaccccaccc 85 |||||||||||||| ||| |||||||| Sbjct: 21104 cgctctccaccgcccccacccccaccc 21130
>gb|AC140022.11| Medicago truncatula clone mth2-11g20, complete sequence Length = 104305 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 68 ccgcctccaaccccaccca 86 ||||||||||||||||||| Sbjct: 54125 ccgcctccaaccccaccca 54107
>emb|AL807752.10| Human DNA sequence from clone RP11-229P13 on chromosome 9 Contains a ribosomal protein L30 (RPL30) pseudogene, the gene for the possible ortholog of mouse f-box and WD-40 domain protein 5 (FBXW5), the C8G gene for complement 8 (gamma polypeptide), a novel gene for the possible ortholog to RIKEN mouse CDNA 9230102M18 (9230192M18Rik), five novel genes, the PTGDS gene for prostaglandin D2 synthase 21kDa (brain), the CLIC3 gene for chloride intracellular channel 3, the ABCA2 gene for ATP-binding cassette (sub-family A (ABC1), member 2), the FUT7 gene for fucosyltransferase 7 (alpha (1,3) fucosyltransferase), the NPDC1 gene for neural proliferation, differentiation and control 1, the ENTPD2 gene for ectonucleoside triphosphate diphosphohydrolase 2, a novel gene for the possible ortholog of RIKEN mouse cDNA 2010317E24 (2010317E25Rik), a novel gene (LOC91373), the 5' end of the MAN1B1 gene for mannosidase (alpha, class 1B, member 1), five novel genes and seventeen CpG islands, complete sequence Length = 158699 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 77 accccacccagctctgccg 95 ||||||||||||||||||| Sbjct: 13285 accccacccagctctgccg 13267
>emb|AL354735.14| Human DNA sequence from clone RP11-738I14 on chromosome 9 Contains the 3' end of the DDX31 gene for DEAD/H box polypeptide 31, the BARHL1 gene for BarH-like 1 (Drosophila) protein, two novel genes and three CpG islands, complete sequence Length = 189821 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 71 cctccaaccccacccagctctgc 93 |||||||||||||||||| |||| Sbjct: 70444 cctccaaccccacccagccctgc 70422
>gb|AY270386.1| Homo sapiens clone SKT04-C11 putative promoter sequence Length = 536 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 46 atggcctccaccgcgctctccac 68 |||||||||||||| |||||||| Sbjct: 425 atggcctccaccgcactctccac 403
>gb|AY299331.1| Homo sapiens EF-hand calcium binding protein 2 (EFCBP2) mRNA, complete cds Length = 1636 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 46 atggcctccaccgcgctctccac 68 |||||||||||||| |||||||| Sbjct: 589 atggcctccaccgcactctccac 567
>ref|XM_794793.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC576212 (LOC576212), mRNA Length = 1461 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 ctccaccgcctccaacccc 81 ||||||||||||||||||| Sbjct: 235 ctccaccgcctccaacccc 217
>gb|BC016979.1| Homo sapiens EF-hand calcium binding protein 2, mRNA (cDNA clone IMAGE:4181575) Length = 1643 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 46 atggcctccaccgcgctctccac 68 |||||||||||||| |||||||| Sbjct: 585 atggcctccaccgcactctccac 563
>emb|AL663115.11| Mouse DNA sequence from clone RP23-452C23 on chromosome 11 Contains the gene for a novel protein simialr to cell division cycle associated 4 Cdca4, a ribosomal protein L15 (Rpl15) pseudogene, the 3' end of a novel gene and two CpG islands, complete sequence Length = 183089 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 1 gctcgctcgctcgatcgtcctct 23 ||||||||||||| ||||||||| Sbjct: 89939 gctcgctcgctcgctcgtcctct 89917
>emb|CR626336.1| full-length cDNA clone CS0DK009YE13 of HeLa cells Cot 25-normalized of Homo sapiens (human) Length = 1947 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 51 ctccaccgcgctctccaccgcct 73 |||||||| |||||||||||||| Sbjct: 1413 ctccaccgagctctccaccgcct 1435
>dbj|AK127376.1| Homo sapiens cDNA FLJ45452 fis, clone BRSTN2006638, weakly similar to Rattus norvegicus synaptotagmin interacting protein 1 (Stip-1) Length = 1528 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 46 atggcctccaccgcgctctccac 68 |||||||||||||| |||||||| Sbjct: 510 atggcctccaccgcactctccac 488
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 130 ggcctgggcttcggccggg 148 ||||||||||||||||||| Sbjct: 309466 ggcctgggcttcggccggg 309448
>emb|CR407025.1| Gallus gallus finished cDNA, clone ChEST910f14 Length = 880 Score = 38.2 bits (19), Expect = 9.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 ccagctctgccgaacccgt 102 ||||||||||||||||||| Sbjct: 69 ccagctctgccgaacccgt 51
>gb|AC010543.9| Homo sapiens chromosome 16 clone RP11-440K14, complete sequence Length = 180286 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 51 ctccaccgcgctctccaccgcct 73 |||||||| |||||||||||||| Sbjct: 47204 ctccaccgagctctccaccgcct 47182
>gb|AF193758.1|AF193758 Homo sapiens neuronal calcium binding protein NECAB2 mRNA, partial cds Length = 867 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 46 atggcctccaccgcgctctccac 68 |||||||||||||| |||||||| Sbjct: 182 atggcctccaccgcactctccac 160
>gb|AC040169.7| Homo sapiens chromosome 16 clone RP11-505K9, complete sequence Length = 212596 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 46 atggcctccaccgcgctctccac 68 |||||||||||||| |||||||| Sbjct: 47132 atggcctccaccgcactctccac 47110
>gb|AC148877.2| Chlamydomonas reinhardtii clone cr-11B1, complete sequence Length = 52591 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 63 ctccaccgcctccaaccccaccc 85 ||||||| ||||||||||||||| Sbjct: 40870 ctccacctcctccaaccccaccc 40892
>emb|AJ890364.1| Emiliania huxleyi virus 86 isolate EhV86 Length = 407339 Score = 38.2 bits (19), Expect = 9.6 Identities = 31/35 (88%) Strand = Plus / Plus Query: 51 ctccaccgcgctctccaccgcctccaaccccaccc 85 ||||||||| ||||||||||| ||||| |||||| Sbjct: 308726 ctccaccgccatctccaccgccaccaactccaccc 308760
>gb|AF070637.1|AF070637 Homo sapiens clone 24712 unknown mRNA, partial cds Length = 1244 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 46 atggcctccaccgcgctctccac 68 |||||||||||||| |||||||| Sbjct: 184 atggcctccaccgcactctccac 162
>gb|AF042498.1|AF042498 Homo sapiens rod photoreceptor CNG-channel beta subunit (RCNC2) mRNA, complete cds Length = 4382 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 51 ctccaccgcgctctccaccgcct 73 |||||||| |||||||||||||| Sbjct: 3636 ctccaccgagctctccaccgcct 3658
>gb|U58837.1|HSU58837 Human cGMP-gated cation channel beta subunit (CNCG2) mRNA, complete cds Length = 4033 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 51 ctccaccgcgctctccaccgcct 73 |||||||| |||||||||||||| Sbjct: 3641 ctccaccgagctctccaccgcct 3663
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 50 cctccaccgcgctctccaccgcc 72 |||||||||||||||||| |||| Sbjct: 1177135 cctccaccgcgctctccaacgcc 1177113
>gb|L15296.1|HUMCNGCCA Homo sapiens clone hRCNC2b retinal rod cyclic nucleotide-gated cation channel gene, complete cds Length = 3408 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 51 ctccaccgcgctctccaccgcct 73 |||||||| |||||||||||||| Sbjct: 2662 ctccaccgagctctccaccgcct 2684
>gb|L15297.1|HUMCNGCCB Homo sapiens clone hRCNC2a retinal rod cyclic nucleotide-gated cation channel gene, complete cds Length = 3025 Score = 38.2 bits (19), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 51 ctccaccgcgctctccaccgcct 73 |||||||| |||||||||||||| Sbjct: 2288 ctccaccgagctctccaccgcct 2310 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,174,770 Number of Sequences: 3902068 Number of extensions: 1174770 Number of successful extensions: 93703 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92831 Number of HSP's gapped (non-prelim): 870 length of query: 194 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 172 effective length of database: 17,147,199,772 effective search space: 2949318360784 effective search space used: 2949318360784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
