ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal20l22 |
|---|---|
| Clone Library Name | barley_pub |
>CYTSA_RAT (Q2KN99) Cytospin-A| Length = 1118 Score = 31.6 bits (70), Expect = 1.8 Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 8/75 (10%) Frame = -1 Query: 584 NSPSSSRQYAVSFLPICRSSSSPNTSPQLACCLSSSGHTPQETQRMT--------MAAAD 429 ++PSSS V + R SS N S CL+ H +E Q T AD Sbjct: 365 DAPSSSESEGVPSIERSRKGSSGNASEVSVACLTERIHQMEENQHSTSEELQATLQELAD 424 Query: 428 AQQVPPLLTEEKSPL 384 QQ+ L E L Sbjct: 425 LQQITQELNSENERL 439
>CYTSA_MOUSE (Q2KN98) Cytospin-A| Length = 1118 Score = 31.6 bits (70), Expect = 1.8 Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 8/75 (10%) Frame = -1 Query: 584 NSPSSSRQYAVSFLPICRSSSSPNTSPQLACCLSSSGHTPQETQRMT--------MAAAD 429 ++PSSS V + R SS N S CL+ H +E Q T AD Sbjct: 365 DAPSSSESEGVPSIERSRKGSSGNASEVSVACLTERIHQMEENQHSTSEELQATLQELAD 424 Query: 428 AQQVPPLLTEEKSPL 384 QQ+ L E L Sbjct: 425 LQQITQELNSENERL 439
>CYTSA_CHICK (Q2KN97) Cytospin-A| Length = 1118 Score = 31.6 bits (70), Expect = 1.8 Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 8/75 (10%) Frame = -1 Query: 584 NSPSSSRQYAVSFLPICRSSSSPNTSPQLACCLSSSGHTPQETQRMT--------MAAAD 429 ++PSSS V + R SS N S CL+ H +E Q T AD Sbjct: 365 DAPSSSESEGVPSIERSRKGSSGNASEVSVACLTERIHQMEENQHSTAEELQATLQELAD 424 Query: 428 AQQVPPLLTEEKSPL 384 QQ+ L E L Sbjct: 425 LQQITQELNSENERL 439
>CYTSA_PANTR (Q2KNA1) Cytospin-A| Length = 1117 Score = 31.2 bits (69), Expect = 2.4 Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 8/75 (10%) Frame = -1 Query: 584 NSPSSSRQYAVSFLPICRSSSSPNTSPQLACCLSSSGHTPQETQRMT--------MAAAD 429 ++PSSS + + R SS N S CL+ H +E Q T AD Sbjct: 364 DAPSSSESEGIPSIERSRKGSSGNASEVSVACLTERIHQMEENQHSTSEELQATLQELAD 423 Query: 428 AQQVPPLLTEEKSPL 384 QQ+ L E L Sbjct: 424 LQQITQELNSENERL 438
>CYTSA_CANFA (Q2KNA0) Cytospin-A| Length = 1117 Score = 31.2 bits (69), Expect = 2.4 Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 8/75 (10%) Frame = -1 Query: 584 NSPSSSRQYAVSFLPICRSSSSPNTSPQLACCLSSSGHTPQETQRMT--------MAAAD 429 ++PSSS + + R SS N S CL+ H +E Q T AD Sbjct: 364 DAPSSSESEGIPSIERSRKGSSGNASEVSVACLTERIHQMEENQHSTSEELQATLQELAD 423 Query: 428 AQQVPPLLTEEKSPL 384 QQ+ L E L Sbjct: 424 LQQITQELNSENERL 438
>SPTA3_MOUSE (Q9D9T6) Spermatogenesis-associated protein 3 (Testis spermatocyte| apoptosis-related protein 1) (Testis and spermatogenesis cell-related protein 1) (mTSARG1) Length = 193 Score = 30.8 bits (68), Expect = 3.2 Identities = 29/93 (31%), Positives = 40/93 (43%) Frame = -1 Query: 602 AIAPFQNSPSSSRQYAVSFLPICRSSSSPNTSPQLACCLSSSGHTPQETQRMTMAAADAQ 423 +I+P Q S SS+Q + P C +SP + PQ C S++ H Q Q Sbjct: 17 SISP-QTSSDSSQQPSSETPPSCPEPASPPSKPQ-PCQESTTPH--QVNPEPKPQQHTPQ 72 Query: 422 QVPPLLTEEKSPLLHFQKHLPRIPWCSAAAPST 324 +PP SP L + P +P AA P T Sbjct: 73 PLPPPEKPASSPFLVPMEPKPILPSRKAAVPLT 105
>DBP_RAT (P16443) D site-binding protein (Albumin D box-binding protein)| (Albumin D-element-binding protein) (D site albumin promoter-binding protein 1) Length = 325 Score = 30.8 bits (68), Expect = 3.2 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Frame = -1 Query: 581 SPSSSRQYAVSFLPICRSSSSPNTS----PQLACCLSSSGHTPQETQRMTMAAADAQQVP 414 +PS +R A S P SSSSP +S P A ++ GH T R T + D V Sbjct: 141 APSPARTPAPSPGPGSCSSSSPRSSPGHAPARATLGAAGGHRAGLTSRDTPSPVDPDTVE 200 Query: 413 PLLTEEKSP 387 L+T E P Sbjct: 201 VLMTFEPDP 209
>DBP_MOUSE (Q60925) D site-binding protein (Albumin D box-binding protein)| (Albumin D-element-binding protein) Length = 325 Score = 30.8 bits (68), Expect = 3.2 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Frame = -1 Query: 581 SPSSSRQYAVSFLPICRSSSSPNTS----PQLACCLSSSGHTPQETQRMTMAAADAQQVP 414 +PS +R A S P SSSSP +S P A ++ GH T R T + D V Sbjct: 141 APSPARTPAPSPGPGSCSSSSPRSSPGHAPARATLGAAGGHRAGLTSRDTPSPVDPDTVE 200 Query: 413 PLLTEEKSP 387 L+T E P Sbjct: 201 VLMTFEPDP 209
>CYTSA_HUMAN (Q69YQ0) Cytospin-A (NY-REN-22 antigen)| Length = 1117 Score = 30.8 bits (68), Expect = 3.2 Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 8/75 (10%) Frame = -1 Query: 584 NSPSSSRQYAVSFLPICRSSSSPNTSPQLACCLSSSGHTPQETQRMT--------MAAAD 429 ++PSSS + + R SS N S CL+ H +E Q T AD Sbjct: 364 DAPSSSESEGILSIERSRKGSSGNASEVSVACLTERIHQMEENQHSTSEELQATLQELAD 423 Query: 428 AQQVPPLLTEEKSPL 384 QQ+ L E L Sbjct: 424 LQQITQELNSENERL 438
>NU2M_STRPU (P15549) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 352 Score = 30.4 bits (67), Expect = 4.1 Identities = 16/51 (31%), Positives = 28/51 (54%) Frame = -3 Query: 594 SFPELSFIFSTICRVFSSNLPLIFLPKHITAARLLPFLFRSYSPRDAEDDN 442 +F ++ + TI V S N +I++ ++ L+P L +SPR+ E DN Sbjct: 7 TFLFVTVVSGTIIVVSSENWFIIWVGLELSTLALVPILCSGFSPRNVEADN 57
>MUTL_RHILO (Q983L2) DNA mismatch repair protein mutL| Length = 627 Score = 30.0 bits (66), Expect = 5.4 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = -3 Query: 258 SSLGQRVDVTFFSGSSSL-LVEGAGGLDLLAATSSGWSLPMPEL*LLAASLCS 103 S + + V+ +G+S + +V GGL+L+ T G +P PEL L A C+ Sbjct: 25 SVVKELVENALDAGASRVEVVTAGGGLNLIRVTDDGSGIPEPELALAIARHCT 77
>CYTSA_BRARE (Q2KN93) Cytospin-A| Length = 1132 Score = 30.0 bits (66), Expect = 5.4 Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 12/76 (15%) Frame = -1 Query: 575 SSSRQYAVSFLPICRSSS----SPNTSPQLACCLSSSGHTPQETQRMT--------MAAA 432 SSS + P CRSSS S NTS CL+ H +E Q T A Sbjct: 354 SSSSSESEGGPPACRSSSRKGSSGNTSEVSVACLTERIHQMEENQHSTSEELQATLQELA 413 Query: 431 DAQQVPPLLTEEKSPL 384 D QQ+ L E L Sbjct: 414 DLQQITQELNGENERL 429
>CREA_ASPAC (O94166) DNA-binding protein creA (Carbon catabolite repressor)| Length = 431 Score = 30.0 bits (66), Expect = 5.4 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 3/84 (3%) Frame = -1 Query: 578 PSSSRQYAVSFLPICRSSSSPNTSPQLACCLSSSGHTPQETQRMTMAAADAQQVPPLLTE 399 P+SS ++ P + S +SP S TP Q + A+ +PPL+ Sbjct: 4 PASSVDFSNLLNPQSNPTESTPSSPATPVDSSKGPSTPSSAQSTSSMASSVSLLPPLMKG 63 Query: 398 EKSPLLHFQKHLPR---IPWCSAA 336 + ++ LPR P C A Sbjct: 64 SRPATEEVRQDLPRPYKCPLCDRA 87
>PO121_MOUSE (Q8K3Z9) Nuclear envelope pore membrane protein POM 121 (Pore| membrane protein of 121 kDa) Length = 1200 Score = 29.6 bits (65), Expect = 7.0 Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 8/72 (11%) Frame = -1 Query: 578 PSSSRQYAVSFLPICRSSS-----SPNTSPQLACCLSSSGHTPQETQRMTMAAADAQQV- 417 PSSSR S R S S TS + SS TP+ + T QQ Sbjct: 380 PSSSRNAITSSYSSTRGISQLWKRSGPTSSPFSSPASSRSQTPERPAKKTREEEPCQQSS 439 Query: 416 --PPLLTEEKSP 387 PPL+T+++SP Sbjct: 440 SSPPLVTDKESP 451
>DBP_HUMAN (Q10586) D site-binding protein (Albumin D box-binding protein)| (Albumin D-element-binding protein) (TAXREB302) Length = 325 Score = 29.6 bits (65), Expect = 7.0 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 4/68 (5%) Frame = -1 Query: 578 PSSSRQYAVSFLPICRSSSSPNTS----PQLACCLSSSGHTPQETQRMTMAAADAQQVPP 411 PS +R A S P S+SP +S P A ++SGH T R T + D V Sbjct: 142 PSPARTPAPSPGPGSCGSASPRSSPGHAPARAALGTASGHRAGLTSRDTPSPVDPDTVEV 201 Query: 410 LLTEEKSP 387 L+T E P Sbjct: 202 LMTFEPDP 209
>BPA1_MOUSE (Q91ZU6) Bullous pemphigoid antigen 1, isoforms 1/2/3/4 (BPA)| (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) Length = 7389 Score = 29.6 bits (65), Expect = 7.0 Identities = 12/46 (26%), Positives = 29/46 (63%) Frame = +3 Query: 249 LTKNQEQKHQPAPVLPYLQKVNFLTS*WRRC*APGNSRKMLLKMQQ 386 L+K Q+ + + + ++ +L+K+N S WR+ P ++ + L+++Q Sbjct: 4438 LSKLQKAQEESSAMMQWLEKMNKTASRWRQTPTPADTESVKLQVEQ 4483
>PKN3_MOUSE (Q8K045) Serine/threonine-protein kinase N3 (EC 2.7.11.13) (Protein| kinase PKN-beta) (Protein-kinase C-related kinase 3) Length = 878 Score = 29.3 bits (64), Expect = 9.2 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 3/71 (4%) Frame = -1 Query: 554 VSFLPICRS---SSSPNTSPQLACCLSSSGHTPQETQRMTMAAADAQQVPPLLTEEKSPL 384 +S LP C S +S P P A C + S +P M + + + PP K P Sbjct: 452 MSLLPPCSSPNTASPPKGRPSTAVCGTPSAASPSNFLPMKTLSKEDTKPPP-----KPPR 506 Query: 383 LHFQKHLPRIP 351 L+ Q+ P P Sbjct: 507 LYLQEPAPGTP 517
>MRS2_NEUCR (Q7SFQ9) Inner membrane magnesium transporter MRS2, mitochondrial| precursor (RNA-splicing protein MRS2) Length = 547 Score = 29.3 bits (64), Expect = 9.2 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 2/68 (2%) Frame = -1 Query: 554 VSFLPICRSSSSPNTSPQL--ACCLSSSGHTPQETQRMTMAAADAQQVPPLLTEEKSPLL 381 +SF P CR+++ + + Q C S P++ T + + PP T+ ++ L+ Sbjct: 25 LSFAPTCRAAAERHPALQCRHGCTAGGSTRPPRQPSSSTTTRSLSTATPPKRTQLRAGLV 84 Query: 380 HFQKHLPR 357 + LP+ Sbjct: 85 DLEAILPK 92
>NCKX1_BISBI (O46383) Sodium/potassium/calcium exchanger 1| (Na(+)/K(+)/Ca(2+)-exchange protein 1) (Retinal rod Na-Ca+K exchanger) (Fragment) Length = 300 Score = 29.3 bits (64), Expect = 9.2 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +1 Query: 478 EEERQQASCGDVFGEEDERQIGRKDTAYCREDEGEFWKG 594 E E Q G+V G+EDE +I + ++DEGE G Sbjct: 117 EGEIQAGEGGEVEGDEDEGEIQAGEGGEVKDDEGEIQAG 155 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,314,466 Number of Sequences: 219361 Number of extensions: 1824603 Number of successful extensions: 4975 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4721 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4970 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5310515667 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
