ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal21a21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009268.1| Triticum aestivum clone wlk8.pk0002.f4:fis, full insert mRNA sequence Length = 1919 Score = 942 bits (475), Expect = 0.0 Identities = 587/623 (94%), Gaps = 1/623 (0%) Strand = Plus / Plus Query: 2 gaaaatctcatggnacacaggttgagacagggtcagcaatcacctggaagtacccaagtg 61 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1120 gaaaatctcatgg-acacaggttgagacagggtcagcaatcacctggaagtacccaagtg 1178 Query: 62 tggagctggttggggacgacaccgttggagagttctactcggtagcgctgactaaggatt 121 ||||||| |||||||||||||| ||||||||||||||||| ||||| ||| | ||||||| Sbjct: 1179 tggagcttgttggggacgacactgttggagagttctactccgtagcactgcccaaggatt 1238 Query: 122 accagcaggccgatacagggacaaagatgatccacaaggggaagaattcacgcagccgga 181 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 1239 accagcaggccgatacagggacaaagatgatccataaggggaagaattcacgcagccgga 1298 Query: 182 ttatatccaagggtatctcagcggggaagtcaaggaattgctaccgtgggctggtccaga 241 |||||||||| |||||||| || || |||||||||||||||||||||||||||||||||| Sbjct: 1299 ttatatccaaaggtatctcggcaggaaagtcaaggaattgctaccgtgggctggtccaga 1358 Query: 242 tgaattcaggtgcagagaatgcgtataactcttctcagtgtgattcattgctgattgggg 301 |||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| Sbjct: 1359 tgaattcaggtgcagagaatgcttataattcttcgcagtgtgattcattgctgattgggg 1418 Query: 302 acaaggctgctgctaacacctatcccaccattcaggtgggttgtactagtggccgtgttg 361 |||| ||||| || ||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct: 1419 acaacgctgccgccaacacctatccgaccattcaggtgggttgcactagtggccgtgttg 1478 Query: 362 agcatgaagcaagcacatccaaaattggagaggaccagctgttttactttcagcaaaggg 421 ||||||| |||||||||||||||||||| ||||| ||||| || |||||||||||||| | Sbjct: 1479 agcatgaggcaagcacatccaaaattggcgaggatcagctattctactttcagcaaagag 1538 Query: 422 ggatagatcatgaaaaggccgttgcagccatgatcggtggattctgtagggccgtctttg 481 |||| ||||||||||||||||||||||||||||| ||||| |||||||| |||||||||| Sbjct: 1539 ggattgatcatgaaaaggccgttgcagccatgataggtgggttctgtagagccgtctttg 1598 Query: 482 aacaccttccttacgagtttgcccaggaggtggatgcacttatgaacctgaagctggagg 541 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1599 aacaccttccttacgagtttgcccaggaggtggatgcactaatgaacctgaagctggagg 1658 Query: 542 gatcagttggctaagttcttggttcaacaagtatgtgaaatatcatccgataattatctg 601 ||||||||||||||||| |||||||||||||| || ||||||||| |||||||||||||| Sbjct: 1659 gatcagttggctaagttattggttcaacaagtctgcgaaatatcacccgataattatctg 1718 Query: 602 aaataccatacgatggtcatcta 624 ||||||||||||||||| ||||| Sbjct: 1719 aaataccatacgatggttatcta 1741
>ref|NM_190436.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1635 Score = 543 bits (274), Expect = e-151 Identities = 479/546 (87%), Gaps = 1/546 (0%) Strand = Plus / Plus Query: 6 atctcatggnacacaggttgagacagggtcagcaatcacctggaagtacccaagtgtgga 65 ||||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||| Sbjct: 1087 atctcatgg-acacaggttgagacaggttcagcaattacatggaagtacccaagtgtgga 1145 Query: 66 gctggttggggacgacaccgttggagagttctactcggtagcgctgactaaggattacca 125 ||| ||||||| || || ||||||||||||||||| || || ||||| ||||||||||| Sbjct: 1146 gcttcttggggatgatactgttggagagttctactcagttgcactgacgaaggattacca 1205 Query: 126 gcaggccgatacagggacaaagatgatccacaaggggaagaattcacgcagccggattat 185 |||||| || ||||||||||| |||||||||||||| |||||||| || || |||||||| Sbjct: 1206 gcaggcagacacagggacaaaaatgatccacaagggaaagaattcgcggagtcggattat 1265 Query: 186 atccaagggtatctcagcggggaagtcaaggaattgctaccgtgggctggtccagatgaa 245 |||||| ||||||||||| ||||||||| ||||||||||||||||| |||||||||| || Sbjct: 1266 atccaaaggtatctcagctgggaagtcacggaattgctaccgtgggttggtccagataaa 1325 Query: 246 ttcaggtgcagagaatgcgtataactcttctcagtgtgattcattgctgattggggacaa 305 ||||| ||||| ||||| ||||| ||||| ||||||||||| |||||||||||||| || Sbjct: 1326 ctcaggcgcagaaaatgcttataattcttcacagtgtgattctttgctgattggggataa 1385 Query: 306 ggctgctgctaacacctatcccaccattcaggtgggttgtactagtggccgtgttgagca 365 |||||||| ||||||||||| || |||||||||||||| | | | | ||||||||||| Sbjct: 1386 cgctgctgccaacacctatccgactattcaggtgggttgcatttctagtcgtgttgagca 1445 Query: 366 tgaagcaagcacatccaaaattggagaggaccagctgttttactttcagcaaagggggat 425 ||| |||||||| || ||||| || ||||||||||| ||||| || || ||||||||||| Sbjct: 1446 tgaggcaagcacttcaaaaataggggaggaccagctattttatttccaacaaagggggat 1505 Query: 426 agatcatgaaaaggccgttgcagccatgatcggtggattctgtagggccgtctttgaaca 485 ||| ||||||||||| |||||||| ||||| ||||||||||| ||||| || || || | Sbjct: 1506 agaccatgaaaaggctgttgcagcgatgattggtggattctgcagggctgttttcgagaa 1565 Query: 486 ccttccttacgagtttgcccaggaggtggatgcacttatgaacctgaagctggagggatc 545 ||||||||||||||||| || ||| ||||||||||||||||||||||||| |||||||| Sbjct: 1566 tcttccttacgagtttgcacatgagatggatgcacttatgaacctgaagcttgagggatc 1625 Query: 546 agttgg 551 |||||| Sbjct: 1626 agttgg 1631
>dbj|AK121100.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069G03, full insert sequence Length = 1978 Score = 543 bits (274), Expect = e-151 Identities = 479/546 (87%), Gaps = 1/546 (0%) Strand = Plus / Plus Query: 6 atctcatggnacacaggttgagacagggtcagcaatcacctggaagtacccaagtgtgga 65 ||||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||| Sbjct: 1133 atctcatgg-acacaggttgagacaggttcagcaattacatggaagtacccaagtgtgga 1191 Query: 66 gctggttggggacgacaccgttggagagttctactcggtagcgctgactaaggattacca 125 ||| ||||||| || || ||||||||||||||||| || || ||||| ||||||||||| Sbjct: 1192 gcttcttggggatgatactgttggagagttctactcagttgcactgacgaaggattacca 1251 Query: 126 gcaggccgatacagggacaaagatgatccacaaggggaagaattcacgcagccggattat 185 |||||| || ||||||||||| |||||||||||||| |||||||| || || |||||||| Sbjct: 1252 gcaggcagacacagggacaaaaatgatccacaagggaaagaattcgcggagtcggattat 1311 Query: 186 atccaagggtatctcagcggggaagtcaaggaattgctaccgtgggctggtccagatgaa 245 |||||| ||||||||||| ||||||||| ||||||||||||||||| |||||||||| || Sbjct: 1312 atccaaaggtatctcagctgggaagtcacggaattgctaccgtgggttggtccagataaa 1371 Query: 246 ttcaggtgcagagaatgcgtataactcttctcagtgtgattcattgctgattggggacaa 305 ||||| ||||| ||||| ||||| ||||| ||||||||||| |||||||||||||| || Sbjct: 1372 ctcaggcgcagaaaatgcttataattcttcacagtgtgattctttgctgattggggataa 1431 Query: 306 ggctgctgctaacacctatcccaccattcaggtgggttgtactagtggccgtgttgagca 365 |||||||| ||||||||||| || |||||||||||||| | | | | ||||||||||| Sbjct: 1432 cgctgctgccaacacctatccgactattcaggtgggttgcatttctagtcgtgttgagca 1491 Query: 366 tgaagcaagcacatccaaaattggagaggaccagctgttttactttcagcaaagggggat 425 ||| |||||||| || ||||| || ||||||||||| ||||| || || ||||||||||| Sbjct: 1492 tgaggcaagcacttcaaaaataggggaggaccagctattttatttccaacaaagggggat 1551 Query: 426 agatcatgaaaaggccgttgcagccatgatcggtggattctgtagggccgtctttgaaca 485 ||| ||||||||||| |||||||| ||||| ||||||||||| ||||| || || || | Sbjct: 1552 agaccatgaaaaggctgttgcagcgatgattggtggattctgcagggctgttttcgagaa 1611 Query: 486 ccttccttacgagtttgcccaggaggtggatgcacttatgaacctgaagctggagggatc 545 ||||||||||||||||| || ||| ||||||||||||||||||||||||| |||||||| Sbjct: 1612 tcttccttacgagtttgcacatgagatggatgcacttatgaacctgaagcttgagggatc 1671 Query: 546 agttgg 551 |||||| Sbjct: 1672 agttgg 1677
>gb|AY103958.1| Zea mays PCO141591 mRNA sequence Length = 1691 Score = 511 bits (258), Expect = e-142 Identities = 478/550 (86%), Gaps = 1/550 (0%) Strand = Plus / Plus Query: 6 atctcatggnacacaggttgagacagggtcagcaatcacctggaagtacccaagtgtgga 65 ||||||||| ||||||||||||||||| || || || || |||||||||||||| || || Sbjct: 841 atctcatgg-acacaggttgagacaggatctgctattacatggaagtacccaagcgttga 899 Query: 66 gctggttggggacgacaccgttggagagttctactcggtagcgctgactaaggattacca 125 ||| || ||||| |||| |||||||||||||||||||| ||||| || ||||||| ||| Sbjct: 900 gctcgtcggggatgacagtgttggagagttctactcggttgcgcttacaaaggattgcca 959 Query: 126 gcaggccgatacagggacaaagatgatccacaaggggaagaattcacgcagccggattat 185 ||| || || |||||||| || ||||||||||||||||| |||||||||||||||||||| Sbjct: 960 gcaagcagacacagggacgaaaatgatccacaaggggaaaaattcacgcagccggattat 1019 Query: 186 atccaagggtatctcagcggggaagtcaaggaattgctaccgtgggctggtccagatgaa 245 ||||||||| ||||| || |||||||||||||||||||||||||| |||||| |||||| Sbjct: 1020 atccaagggcatctctgcagggaagtcaaggaattgctaccgtggcttggtcctgatgaa 1079 Query: 246 ttcaggtgcagagaatgcgtataactcttctcagtgtgattcattgctgattggggacaa 305 || ||||||||||||| ||||| ||||| |||||||| |||||| |||| ||||| || Sbjct: 1080 ctctagtgcagagaatgcttataattcttcacagtgtgactcattgttgatcggggataa 1139 Query: 306 ggctgctgctaacacctatcccaccattcaggtgggttgtactagtggccgtgttgagca 365 || ||||| |||||||||||||||||||||||||| || ||||||||||| |||||||| Sbjct: 1140 tgcggctgcgaacacctatcccaccattcaggtggggtgcactagtggccgggttgagca 1199 Query: 366 tgaagcaagcacatccaaaattggagaggaccagctgttttactttcagcaaagggggat 425 ||| |||||||| ||||||||||||||||| ||||| ||||| || |||||||| ||| | Sbjct: 1200 tgaggcaagcacttccaaaattggagaggatcagctattttatttccagcaaagaggggt 1259 Query: 426 agatcatgaaaaggccgttgcagccatgatcggtggattctgtagggccgtctttgaaca 485 ||||||||||||||| ||||| |||||||| ||||||||||| || | || || || || Sbjct: 1260 agatcatgaaaaggcagttgccgccatgattggtggattctgcagatctgttttcgagca 1319 Query: 486 ccttccttacgagtttgcccaggaggtggatgcacttatgaacctgaagctggagggatc 545 |||||| || || || || ||||||||||| ||||| ||||||||||| || |||||||| Sbjct: 1320 ccttccctatgaattcgcacaggaggtggacgcactcatgaacctgaaactcgagggatc 1379 Query: 546 agttggctaa 555 |||||||||| Sbjct: 1380 agttggctaa 1389
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 359 bits (181), Expect = 7e-96 Identities = 296/333 (88%), Gaps = 1/333 (0%) Strand = Plus / Minus Query: 6 atctcatggnacacaggttgagacagggtcagcaatcacctggaagtacccaagtgtgga 65 ||||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||| Sbjct: 35500648 atctcatgg-acacaggttgagacaggttcagcaattacatggaagtacccaagtgtgga 35500590 Query: 66 gctggttggggacgacaccgttggagagttctactcggtagcgctgactaaggattacca 125 ||| ||||||| || || ||||||||||||||||| || || ||||| ||||||||||| Sbjct: 35500589 gcttcttggggatgatactgttggagagttctactcagttgcactgacgaaggattacca 35500530 Query: 126 gcaggccgatacagggacaaagatgatccacaaggggaagaattcacgcagccggattat 185 |||||| || ||||||||||| |||||||||||||| |||||||| || || |||||||| Sbjct: 35500529 gcaggcagacacagggacaaaaatgatccacaagggaaagaattcgcggagtcggattat 35500470 Query: 186 atccaagggtatctcagcggggaagtcaaggaattgctaccgtgggctggtccagatgaa 245 |||||| ||||||||||| ||||||||| ||||||||||||||||| |||||||||| || Sbjct: 35500469 atccaaaggtatctcagctgggaagtcacggaattgctaccgtgggttggtccagataaa 35500410 Query: 246 ttcaggtgcagagaatgcgtataactcttctcagtgtgattcattgctgattggggacaa 305 ||||| ||||| ||||| ||||| ||||| ||||||||||| |||||||||||||| || Sbjct: 35500409 ctcaggcgcagaaaatgcttataattcttcacagtgtgattctttgctgattggggataa 35500350 Query: 306 ggctgctgctaacacctatcccaccattcaggt 338 |||||||| ||||||||||| || |||||||| Sbjct: 35500349 cgctgctgccaacacctatccgactattcaggt 35500317 Score = 200 bits (101), Expect = 4e-48 Identities = 173/197 (87%) Strand = Plus / Minus Query: 355 cgtgttgagcatgaagcaagcacatccaaaattggagaggaccagctgttttactttcag 414 |||||||||||||| |||||||| || ||||| || ||||||||||| ||||| || || Sbjct: 35499269 cgtgttgagcatgaggcaagcacttcaaaaataggggaggaccagctattttatttccaa 35499210 Query: 415 caaagggggatagatcatgaaaaggccgttgcagccatgatcggtggattctgtagggcc 474 |||||||||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||| Sbjct: 35499209 caaagggggatagaccatgaaaaggctgttgcagcgatgattggtggattctgcagggct 35499150 Query: 475 gtctttgaacaccttccttacgagtttgcccaggaggtggatgcacttatgaacctgaag 534 || || || | ||||||||||||||||| || ||| ||||||||||||||||||||||| Sbjct: 35499149 gttttcgagaatcttccttacgagtttgcacatgagatggatgcacttatgaacctgaag 35499090 Query: 535 ctggagggatcagttgg 551 || |||||||||||||| Sbjct: 35499089 cttgagggatcagttgg 35499073
>dbj|AP003252.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0446G04 Length = 143515 Score = 359 bits (181), Expect = 7e-96 Identities = 296/333 (88%), Gaps = 1/333 (0%) Strand = Plus / Minus Query: 6 atctcatggnacacaggttgagacagggtcagcaatcacctggaagtacccaagtgtgga 65 ||||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||| Sbjct: 30835 atctcatgg-acacaggttgagacaggttcagcaattacatggaagtacccaagtgtgga 30777 Query: 66 gctggttggggacgacaccgttggagagttctactcggtagcgctgactaaggattacca 125 ||| ||||||| || || ||||||||||||||||| || || ||||| ||||||||||| Sbjct: 30776 gcttcttggggatgatactgttggagagttctactcagttgcactgacgaaggattacca 30717 Query: 126 gcaggccgatacagggacaaagatgatccacaaggggaagaattcacgcagccggattat 185 |||||| || ||||||||||| |||||||||||||| |||||||| || || |||||||| Sbjct: 30716 gcaggcagacacagggacaaaaatgatccacaagggaaagaattcgcggagtcggattat 30657 Query: 186 atccaagggtatctcagcggggaagtcaaggaattgctaccgtgggctggtccagatgaa 245 |||||| ||||||||||| ||||||||| ||||||||||||||||| |||||||||| || Sbjct: 30656 atccaaaggtatctcagctgggaagtcacggaattgctaccgtgggttggtccagataaa 30597 Query: 246 ttcaggtgcagagaatgcgtataactcttctcagtgtgattcattgctgattggggacaa 305 ||||| ||||| ||||| ||||| ||||| ||||||||||| |||||||||||||| || Sbjct: 30596 ctcaggcgcagaaaatgcttataattcttcacagtgtgattctttgctgattggggataa 30537 Query: 306 ggctgctgctaacacctatcccaccattcaggt 338 |||||||| ||||||||||| || |||||||| Sbjct: 30536 cgctgctgccaacacctatccgactattcaggt 30504 Score = 200 bits (101), Expect = 4e-48 Identities = 173/197 (87%) Strand = Plus / Minus Query: 355 cgtgttgagcatgaagcaagcacatccaaaattggagaggaccagctgttttactttcag 414 |||||||||||||| |||||||| || ||||| || ||||||||||| ||||| || || Sbjct: 29456 cgtgttgagcatgaggcaagcacttcaaaaataggggaggaccagctattttatttccaa 29397 Query: 415 caaagggggatagatcatgaaaaggccgttgcagccatgatcggtggattctgtagggcc 474 |||||||||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||| Sbjct: 29396 caaagggggatagaccatgaaaaggctgttgcagcgatgattggtggattctgcagggct 29337 Query: 475 gtctttgaacaccttccttacgagtttgcccaggaggtggatgcacttatgaacctgaag 534 || || || | ||||||||||||||||| || ||| ||||||||||||||||||||||| Sbjct: 29336 gttttcgagaatcttccttacgagtttgcacatgagatggatgcacttatgaacctgaag 29277 Query: 535 ctggagggatcagttgg 551 || |||||||||||||| Sbjct: 29276 cttgagggatcagttgg 29260
>dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1088C09 Length = 154084 Score = 359 bits (181), Expect = 7e-96 Identities = 296/333 (88%), Gaps = 1/333 (0%) Strand = Plus / Minus Query: 6 atctcatggnacacaggttgagacagggtcagcaatcacctggaagtacccaagtgtgga 65 ||||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||| Sbjct: 124597 atctcatgg-acacaggttgagacaggttcagcaattacatggaagtacccaagtgtgga 124539 Query: 66 gctggttggggacgacaccgttggagagttctactcggtagcgctgactaaggattacca 125 ||| ||||||| || || ||||||||||||||||| || || ||||| ||||||||||| Sbjct: 124538 gcttcttggggatgatactgttggagagttctactcagttgcactgacgaaggattacca 124479 Query: 126 gcaggccgatacagggacaaagatgatccacaaggggaagaattcacgcagccggattat 185 |||||| || ||||||||||| |||||||||||||| |||||||| || || |||||||| Sbjct: 124478 gcaggcagacacagggacaaaaatgatccacaagggaaagaattcgcggagtcggattat 124419 Query: 186 atccaagggtatctcagcggggaagtcaaggaattgctaccgtgggctggtccagatgaa 245 |||||| ||||||||||| ||||||||| ||||||||||||||||| |||||||||| || Sbjct: 124418 atccaaaggtatctcagctgggaagtcacggaattgctaccgtgggttggtccagataaa 124359 Query: 246 ttcaggtgcagagaatgcgtataactcttctcagtgtgattcattgctgattggggacaa 305 ||||| ||||| ||||| ||||| ||||| ||||||||||| |||||||||||||| || Sbjct: 124358 ctcaggcgcagaaaatgcttataattcttcacagtgtgattctttgctgattggggataa 124299 Query: 306 ggctgctgctaacacctatcccaccattcaggt 338 |||||||| ||||||||||| || |||||||| Sbjct: 124298 cgctgctgccaacacctatccgactattcaggt 124266 Score = 200 bits (101), Expect = 4e-48 Identities = 173/197 (87%) Strand = Plus / Minus Query: 355 cgtgttgagcatgaagcaagcacatccaaaattggagaggaccagctgttttactttcag 414 |||||||||||||| |||||||| || ||||| || ||||||||||| ||||| || || Sbjct: 123218 cgtgttgagcatgaggcaagcacttcaaaaataggggaggaccagctattttatttccaa 123159 Query: 415 caaagggggatagatcatgaaaaggccgttgcagccatgatcggtggattctgtagggcc 474 |||||||||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||| Sbjct: 123158 caaagggggatagaccatgaaaaggctgttgcagcgatgattggtggattctgcagggct 123099 Query: 475 gtctttgaacaccttccttacgagtttgcccaggaggtggatgcacttatgaacctgaag 534 || || || | ||||||||||||||||| || ||| ||||||||||||||||||||||| Sbjct: 123098 gttttcgagaatcttccttacgagtttgcacatgagatggatgcacttatgaacctgaag 123039 Query: 535 ctggagggatcagttgg 551 || |||||||||||||| Sbjct: 123038 cttgagggatcagttgg 123022
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 91 gagttctactcggtagcgctgactaaggattaccagcaggccgatacagggacaaagatg 150 |||||||||||||| ||| |||| || ||||||||||||||||||| || || |||||| Sbjct: 2581244 gagttctactcggttgcggtgaccaacaattaccagcaggccgataccggcaccaagatg 2581185 Query: 151 atccacaa 158 |||||||| Sbjct: 2581184 atccacaa 2581177
>gb|AY943856.1| Nicotiana benthamiana non-intrinsic ABC protein mRNA, partial cds Length = 1638 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Plus Query: 85 gttggagagttctactcggtagcgctgactaaggattaccagcaggccgatacagggaca 144 ||||| || ||||| || || ||| ||||||| |||| |||||||| |||||||||||| Sbjct: 1171 gttggtgaattctattctgtggcgttgactaataattatcagcaggcggatacagggaca 1230 Query: 145 aagatgatccacaaggggaagaat 168 |||||||| ||||| ||||||||| Sbjct: 1231 aagatgatacacaaagggaagaat 1254
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 67.9 bits (34), Expect = 4e-08 Identities = 112/138 (81%) Strand = Plus / Plus Query: 19 caggttgagacagggtcagcaatcacctggaagtacccaagtgtggagctggttggggac 78 ||||| ||||| || || || ||||||||||||||||| || ||| ||| |||||| Sbjct: 4501542 caggtggagaccggctcggccatcacctggaagtaccccagcgtgatcctgcagggggac 4501601 Query: 79 gacaccgttggagagttctactcggtagcgctgactaaggattaccagcaggccgataca 138 || |||| || |||||||||||||| |||||||| || | |||||||||||||| || Sbjct: 4501602 aacgccgtgggcgagttctactcggtggcgctgaccaaccactaccagcaggccgacacc 4501661 Query: 139 gggacaaagatgatccac 156 || || |||||||||||| Sbjct: 4501662 ggcaccaagatgatccac 4501679
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 54.0 bits (27), Expect = 6e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 91 gagttctactcggtagcgctgactaaggattaccagcaggccgatacagggacaaagatg 150 |||||||| ||||| ||||| || || | ||||||||||||||||| || || |||||| Sbjct: 1466666 gagttctattcggtggcgctcaccaacaactaccagcaggccgataccggcactaagatg 1466725 Query: 151 atccaca 157 ||||||| Sbjct: 1466726 atccaca 1466732
>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome Length = 5057531 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 124 cagcaggccgatacagggacaaagatgatccac 156 |||||||||||||| || ||||||||||||||| Sbjct: 1833478 cagcaggccgataccggcacaaagatgatccac 1833510
>gb|AE016828.2| Coxiella burnetii RSA 493, complete genome Length = 1995281 Score = 48.1 bits (24), Expect = 0.035 Identities = 39/44 (88%) Strand = Plus / Minus Query: 355 cgtgttgagcatgaagcaagcacatccaaaattggagaggacca 398 ||||||||||| ||||||| || || ||||||||||||||||| Sbjct: 1309740 cgtgttgagcacgaagcaactacctctaaaattggagaggacca 1309697
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 48.1 bits (24), Expect = 0.035 Identities = 33/36 (91%) Strand = Plus / Plus Query: 122 accagcaggccgatacagggacaaagatgatccaca 157 |||||||||||||||| || || ||||||||||||| Sbjct: 2001080 accagcaggccgataccggcaccaagatgatccaca 2001115
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 123 ccagcaggccgatacagggacaaagatgatccaca 157 ||||||||||||||| || || ||||||||||||| Sbjct: 1038567 ccagcaggccgataccggcaccaagatgatccaca 1038533
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 46.1 bits (23), Expect = 0.14 Identities = 59/71 (83%) Strand = Plus / Minus Query: 85 gttggagagttctactcggtagcgctgactaaggattaccagcaggccgatacagggaca 144 ||||| |||||||| ||||| ||| |||| || || | |||||||||||||| || || Sbjct: 116029 gttggcgagttctattcggttgcggtgaccaacaatcatcagcaggccgatacgggcacg 115970 Query: 145 aagatgatcca 155 ||||||||||| Sbjct: 115969 aagatgatcca 115959
>ref|NM_116715.3| Arabidopsis thaliana ATABC1 AT4G04770 (ATABC1) mRNA, complete cds Length = 1937 Score = 44.1 bits (22), Expect = 0.55 Identities = 34/38 (89%) Strand = Plus / Plus Query: 19 caggttgagacagggtcagcaatcacctggaagtaccc 56 ||||||||||||||||| || || || ||||||||||| Sbjct: 1203 caggttgagacagggtctgcgataacttggaagtaccc 1240 Score = 42.1 bits (21), Expect = 2.2 Identities = 39/45 (86%) Strand = Plus / Plus Query: 124 cagcaggccgatacagggacaaagatgatccacaaggggaagaat 168 ||||| || ||||||||||| |||||||| ||||| || |||||| Sbjct: 1308 cagcaagctgatacagggactaagatgattcacaaaggaaagaat 1352
>gb|AC140245.3| Mus musculus BAC clone RP23-293J3 from chromosome 18, complete sequence Length = 195082 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 509 aggtggatgcacttatgaacct 530 |||||||||||||||||||||| Sbjct: 95093 aggtggatgcacttatgaacct 95114
>emb|AL161501.2|ATCHRIV13 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 13 Length = 200001 Score = 44.1 bits (22), Expect = 0.55 Identities = 34/38 (89%) Strand = Plus / Minus Query: 19 caggttgagacagggtcagcaatcacctggaagtaccc 56 ||||||||||||||||| || || || ||||||||||| Sbjct: 155664 caggttgagacagggtctgcgataacttggaagtaccc 155627 Score = 42.1 bits (21), Expect = 2.2 Identities = 39/45 (86%) Strand = Plus / Minus Query: 124 cagcaggccgatacagggacaaagatgatccacaaggggaagaat 168 ||||| || ||||||||||| |||||||| ||||| || |||||| Sbjct: 155559 cagcaagctgatacagggactaagatgattcacaaaggaaagaat 155515
>gb|AY142069.1| Arabidopsis thaliana At4g04770/T4B21_16 mRNA, complete cds Length = 1674 Score = 44.1 bits (22), Expect = 0.55 Identities = 34/38 (89%) Strand = Plus / Plus Query: 19 caggttgagacagggtcagcaatcacctggaagtaccc 56 ||||||||||||||||| || || || ||||||||||| Sbjct: 1138 caggttgagacagggtctgcgataacttggaagtaccc 1175 Score = 42.1 bits (21), Expect = 2.2 Identities = 39/45 (86%) Strand = Plus / Plus Query: 124 cagcaggccgatacagggacaaagatgatccacaaggggaagaat 168 ||||| || ||||||||||| |||||||| ||||| || |||||| Sbjct: 1243 cagcaagctgatacagggactaagatgattcacaaaggaaagaat 1287
>gb|AF329697.1| Xanthomonas oryzae pv. oryzae insertion sequence IS1051-X and insertion sequence IS1389-X, complete sequence Length = 17229 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Plus Query: 124 cagcaggccgatacagggacaaagatgatccaca 157 |||||||||||||| || || ||||||||||||| Sbjct: 4549 cagcaggccgataccggcaccaagatgatccaca 4582
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Minus Query: 124 cagcaggccgatacagggacaaagatgatccaca 157 |||||||||||||| || || ||||||||||||| Sbjct: 1413561 cagcaggccgataccggcaccaagatgatccaca 1413528
>gb|AE012389.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 297 of 460 of the complete genome Length = 13391 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Plus Query: 124 cagcaggccgatacagggacaaagatgatccaca 157 |||||||||||||| || || ||||||||||||| Sbjct: 9395 cagcaggccgataccggcaccaagatgatccaca 9428
>gb|AY056410.1| Arabidopsis thaliana AT4g04770/T4B21_16 mRNA, complete cds Length = 1842 Score = 44.1 bits (22), Expect = 0.55 Identities = 34/38 (89%) Strand = Plus / Plus Query: 19 caggttgagacagggtcagcaatcacctggaagtaccc 56 ||||||||||||||||| || || || ||||||||||| Sbjct: 1142 caggttgagacagggtctgcgataacttggaagtaccc 1179 Score = 42.1 bits (21), Expect = 2.2 Identities = 39/45 (86%) Strand = Plus / Plus Query: 124 cagcaggccgatacagggacaaagatgatccacaaggggaagaat 168 ||||| || ||||||||||| |||||||| ||||| || |||||| Sbjct: 1247 cagcaagctgatacagggactaagatgattcacaaaggaaagaat 1291
>gb|AY052195.1| Arabidopsis thaliana AT4g04770/T4B21_16 mRNA, complete cds Length = 1904 Score = 44.1 bits (22), Expect = 0.55 Identities = 34/38 (89%) Strand = Plus / Plus Query: 19 caggttgagacagggtcagcaatcacctggaagtaccc 56 ||||||||||||||||| || || || ||||||||||| Sbjct: 1205 caggttgagacagggtctgcgataacttggaagtaccc 1242 Score = 42.1 bits (21), Expect = 2.2 Identities = 39/45 (86%) Strand = Plus / Plus Query: 124 cagcaggccgatacagggacaaagatgatccacaaggggaagaat 168 ||||| || ||||||||||| |||||||| ||||| || |||||| Sbjct: 1310 cagcaagctgatacagggactaagatgattcacaaaggaaagaat 1354
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Minus Query: 124 cagcaggccgatacagggacaaagatgatccaca 157 |||||||||||||| || || ||||||||||||| Sbjct: 1634197 cagcaggccgataccggcaccaagatgatccaca 1634164
>tpg|BK001497.1| TPA: TPA_exp: Arabidopsis thaliana putative ABC transporter 1 mRNA, complete cds; nuclear gene for plastid product Length = 1674 Score = 44.1 bits (22), Expect = 0.55 Identities = 34/38 (89%) Strand = Plus / Plus Query: 19 caggttgagacagggtcagcaatcacctggaagtaccc 56 ||||||||||||||||| || || || ||||||||||| Sbjct: 1138 caggttgagacagggtctgcgataacttggaagtaccc 1175 Score = 42.1 bits (21), Expect = 2.2 Identities = 39/45 (86%) Strand = Plus / Plus Query: 124 cagcaggccgatacagggacaaagatgatccacaaggggaagaat 168 ||||| || ||||||||||| |||||||| ||||| || |||||| Sbjct: 1243 cagcaagctgatacagggactaagatgattcacaaaggaaagaat 1287
>emb|BX827675.1|CNS0A3OT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS9ZB06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1812 Score = 44.1 bits (22), Expect = 0.55 Identities = 34/38 (89%) Strand = Plus / Plus Query: 19 caggttgagacagggtcagcaatcacctggaagtaccc 56 ||||||||||||||||| || || || ||||||||||| Sbjct: 1201 caggttgagacagggtctgcgataacttggaagtaccc 1238 Score = 42.1 bits (21), Expect = 2.2 Identities = 39/45 (86%) Strand = Plus / Plus Query: 124 cagcaggccgatacagggacaaagatgatccacaaggggaagaat 168 ||||| || ||||||||||| |||||||| ||||| || |||||| Sbjct: 1307 cagcaagctgatacagggactaagatgattcacaaaggaaagaat 1351
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 44.1 bits (22), Expect = 0.55 Identities = 58/70 (82%) Strand = Plus / Plus Query: 83 ccgttggagagttctactcggtagcgctgactaaggattaccagcaggccgatacaggga 142 ||||||| || || |||||||| |||||||| || || ||||| |||||||| |||| Sbjct: 2992656 ccgttggtgaattttactcggtggcgctgacaaataatatgcagcaagccgataccggga 2992715 Query: 143 caaagatgat 152 |||||||||| Sbjct: 2992716 caaagatgat 2992725
>gb|AF118223.2|T4B21 Arabidopsis thaliana BAC T4B21 Length = 91470 Score = 44.1 bits (22), Expect = 0.55 Identities = 34/38 (89%) Strand = Plus / Minus Query: 19 caggttgagacagggtcagcaatcacctggaagtaccc 56 ||||||||||||||||| || || || ||||||||||| Sbjct: 43986 caggttgagacagggtctgcgataacttggaagtaccc 43949 Score = 42.1 bits (21), Expect = 2.2 Identities = 39/45 (86%) Strand = Plus / Minus Query: 124 cagcaggccgatacagggacaaagatgatccacaaggggaagaat 168 ||||| || ||||||||||| |||||||| ||||| || |||||| Sbjct: 43881 cagcaagctgatacagggactaagatgattcacaaaggaaagaat 43837
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 44.1 bits (22), Expect = 0.55 Identities = 31/34 (91%) Strand = Plus / Minus Query: 124 cagcaggccgatacagggacaaagatgatccaca 157 |||||||||||||| || || ||||||||||||| Sbjct: 1439215 cagcaggccgataccggcaccaagatgatccaca 1439182
>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome Length = 1709204 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 359 ttgagcatgaagcaagcacat 379 ||||||||||||||||||||| Sbjct: 79572 ttgagcatgaagcaagcacat 79552
>emb|BX537928.1|HSM806046 Homo sapiens genomic DNA; cDNA DKFZp686C2092 (from clone DKFZp686C2092) Length = 4427 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 416 aaagggggatagatcatgaaa 436 ||||||||||||||||||||| Sbjct: 710 aaagggggatagatcatgaaa 690
>gb|AC092421.2| Homo sapiens chromosome 3 clone RP11-476A24, complete sequence Length = 160726 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 567 aacaagtatgtgaaatatcat 587 ||||||||||||||||||||| Sbjct: 30130 aacaagtatgtgaaatatcat 30150
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 123 ccagcaggccgatacagggacaaagatgatcca 155 ||||||||||||||| || || ||||||||||| Sbjct: 2992651 ccagcaggccgataccggcaccaagatgatcca 2992619
>emb|BX827948.1|CNS0A3VL Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH38ZA11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 678 Score = 42.1 bits (21), Expect = 2.2 Identities = 39/45 (86%) Strand = Plus / Plus Query: 124 cagcaggccgatacagggacaaagatgatccacaaggggaagaat 168 ||||| || ||||||||||| |||||||| ||||| || |||||| Sbjct: 51 cagcaagctgatacagggactaagatgattcacaaaggaaagaat 95
>gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete genome Length = 1308759 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 359 ttgagcatgaagcaagcacatccaaaatt 387 ||||||||||||||| |||||||||||| Sbjct: 724233 ttgagcatgaagcaacaacatccaaaatt 724261
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 124 cagcaggccgatacagggacaaagatgatcca 155 |||||||||||||| || || ||||||||||| Sbjct: 2150046 cagcaggccgataccggcaccaagatgatcca 2150015
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 124 cagcaggccgatacagggacaaagatgatcca 155 |||||||||||||| || || ||||||||||| Sbjct: 2172127 cagcaggccgataccggcaccaagatgatcca 2172096
>gb|AC182692.2| Populus trichocarpa clone Pop1-44B2, complete sequence Length = 105327 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 362 agcatgaagcaagcacatccaaaa 385 |||||||| ||||||||||||||| Sbjct: 16261 agcatgaaacaagcacatccaaaa 16284
>gb|AF490364.1| Ceratium horridum extrachromosomal minicircle putative ABC transporter membrane protein Ycf24 (ycf24) gene, partial cds; and putative ATP-dependent transporter Ycf16 (ycf16) gene, complete cds Length = 1954 Score = 40.1 bits (20), Expect = 8.6 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 3 aaaatctcatggnacacaggttgagacagggtcagc 38 ||||| |||||| ||||||||||||||||| ||||| Sbjct: 565 aaaatttcatgg-acacaggttgagacaggttcagc 599
>gb|DQ277922.1| Mus musculus clone Bgal-Synd+.08b immunoglobulin lambda1 light chain variable region gene, partial cds Length = 279 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 ctgattggggacaaggctgc 311 |||||||||||||||||||| Sbjct: 193 ctgattggggacaaggctgc 212
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 121 taccagcaggccgatacagggacaaagatgat 152 ||||||||||||||||| || || |||||||| Sbjct: 1473544 taccagcaggccgataccggcaccaagatgat 1473513
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 121 taccagcaggccgatacagggacaaagatgat 152 ||||||||||||||||| || || |||||||| Sbjct: 2210667 taccagcaggccgataccggcaccaagatgat 2210698
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 127 caggccgatacagggacaaagatgatccacaa 158 ||||||||||| || || |||||||||||||| Sbjct: 202839 caggccgataccggcaccaagatgatccacaa 202870
>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome Length = 2088737 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 caccgttggagagttctact 100 |||||||||||||||||||| Sbjct: 1535225 caccgttggagagttctact 1535244 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,229,028 Number of Sequences: 3902068 Number of extensions: 5229028 Number of successful extensions: 93727 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 93316 Number of HSP's gapped (non-prelim): 409 length of query: 630 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 607 effective length of database: 17,143,297,704 effective search space: 10405981706328 effective search space used: 10405981706328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
