ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal21a17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 54 8e-05
2dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic D... 54 8e-05
3dbj|AK105952.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 8e-05
4gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 44 0.079
5ref|XM_363676.1| Magnaporthe grisea 70-15 hypothetical protein (... 38 4.9
6emb|AL732349.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 38 4.9

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 54.0 bits (27), Expect = 8e-05
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                            
Query: 1        cacttccaaggcgcggacctcgaactgccgcgccggaactacgtcctggacgacccgagg 60
                |||||||| ||||| |||||||| ||||||||   ||||||||||||||| || |   ||
Sbjct: 16924030 cacttccagggcgccgacctcgacctgccgcgggagaactacgtcctggaggatcaccgg 16924089

                                                   
Query: 61       agggggagcttgtgcatcctcctggccgactccgg 95
                ||||||  | ||||| ||||||| | |||||||||
Sbjct: 16924090 agggggcacctgtgcgtcctcctcggcgactccgg 16924124



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>dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0488D02
          Length = 154537

 Score = 54.0 bits (27), Expect = 8e-05
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                         
Query: 1     cacttccaaggcgcggacctcgaactgccgcgccggaactacgtcctggacgacccgagg 60
             |||||||| ||||| |||||||| ||||||||   ||||||||||||||| || |   ||
Sbjct: 53843 cacttccagggcgccgacctcgacctgccgcgggagaactacgtcctggaggatcaccgg 53902

                                                
Query: 61    agggggagcttgtgcatcctcctggccgactccgg 95
             ||||||  | ||||| ||||||| | |||||||||
Sbjct: 53903 agggggcacctgtgcgtcctcctcggcgactccgg 53937



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>dbj|AK105952.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-D02, full
            insert sequence
          Length = 1449

 Score = 54.0 bits (27), Expect = 8e-05
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                        
Query: 1    cacttccaaggcgcggacctcgaactgccgcgccggaactacgtcctggacgacccgagg 60
            |||||||| ||||| |||||||| ||||||||   ||||||||||||||| || |   ||
Sbjct: 1200 cacttccagggcgccgacctcgacctgccgcgggagaactacgtcctggaggatcaccgg 1259

                                               
Query: 61   agggggagcttgtgcatcctcctggccgactccgg 95
            ||||||  | ||||| ||||||| | |||||||||
Sbjct: 1260 agggggcacctgtgcgtcctcctcggcgactccgg 1294



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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 44.1 bits (22), Expect = 0.079
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 10      ggcgcggacctcgaactgccgcgccg 35
               ||||||| ||||||||||||||||||
Sbjct: 4843242 ggcgcggccctcgaactgccgcgccg 4843217



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>ref|XM_363676.1| Magnaporthe grisea 70-15 hypothetical protein (MG01602.4) partial
            mRNA
          Length = 4314

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 75   catcctcctggccgactcc 93
            |||||||||||||||||||
Sbjct: 4024 catcctcctggccgactcc 4006



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>emb|AL732349.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0402C08, complete
             sequence
          Length = 100836

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 76    atcctcctggccgactccg 94
             |||||||||||||||||||
Sbjct: 54056 atcctcctggccgactccg 54074


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 508,279
Number of Sequences: 3902068
Number of extensions: 508279
Number of successful extensions: 36007
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 35946
Number of HSP's gapped (non-prelim): 64
length of query: 108
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 87
effective length of database: 17,151,101,840
effective search space: 1492145860080
effective search space used: 1492145860080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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