ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal21a05 |
|---|---|
| Clone Library Name | barley_pub |
>Y1826_MYCBO (P63745) Hypothetical protein Mb1826| Length = 610 Score = 31.2 bits (69), Expect = 2.1 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Frame = +3 Query: 75 VLKDPDYEQGETLLWEASGSPLIPLSEFS-HPSVAKKYGVKPDAETLDMLNTIAKQKEVA 251 +L DP+ + T W+ +P +E + H +A KY + DAE ML +KE+ Sbjct: 268 ILTDPETIEARTDPWDPDSAPTRAQTEAARHAEMAAKYLAEGDAELNAMLGMEQAKKEIK 327 Query: 252 VV 257 ++ Sbjct: 328 LI 329
>Y1798_MYCTU (P63744) Hypothetical protein Rv1798/MT1847| Length = 610 Score = 31.2 bits (69), Expect = 2.1 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Frame = +3 Query: 75 VLKDPDYEQGETLLWEASGSPLIPLSEFS-HPSVAKKYGVKPDAETLDMLNTIAKQKEVA 251 +L DP+ + T W+ +P +E + H +A KY + DAE ML +KE+ Sbjct: 268 ILTDPETIEARTDPWDPDSAPTRAQTEAARHAEMAAKYLAEGDAELNAMLGMEQAKKEIK 327 Query: 252 VV 257 ++ Sbjct: 328 LI 329
>CECR2_HUMAN (Q9BXF3) Cat eye syndrome critical region protein 2| Length = 1484 Score = 30.4 bits (67), Expect = 3.6 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = +2 Query: 257 FQSPVWRSPREAMPSHP*HAHQLPGHWEQGP-WQAQEGALGQCQRLRREQ 403 FQ + SP A+P H A Q G ++GP ++ QE LG Q + EQ Sbjct: 1378 FQPRAYSSPVAALPPHHPGATQPNGLSQEGPIYRCQEEGLGHFQAVMMEQ 1427
>PPSA_AERPE (Q9YEC5) Phosphoenolpyruvate synthase (EC 2.7.9.2) (Pyruvate, water| dikinase) (PEP synthase) Length = 845 Score = 30.4 bits (67), Expect = 3.6 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%) Frame = +3 Query: 84 DPDYEQGETLLWEASGSPLIPLSEFSHPSVAK---KYGVKPDAETL 212 DPD + + SG L L HP+VA+ KYG++PDA +L Sbjct: 283 DPDLNENVEIKIPESGEELEDLRR-KHPAVAEVVEKYGIRPDAPSL 327
>ITPK1_ARATH (Q9SBA5) Inositol-tetrakisphosphate 1-kinase 1 (EC 2.7.1.134)| (Inositol-triphosphate 5/6-kinase 1) (EC 2.7.1.-) (Inositol 1,3,4-trisphosphate 5/6-kinase 1) (AtItpk-1) Length = 319 Score = 30.0 bits (66), Expect = 4.8 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 7/60 (11%) Frame = -1 Query: 344 PAPNDQAADGHVM------DGLA*LLAGISKQDFGNHGNLLLLSYGV-EHVQCFSIRLHP 186 P D +A H M +G+ L A I Q+F NHG ++ Y V +HV+C R P Sbjct: 146 PLDADGSAKSHKMFLIYDQEGMKILKAPIVLQEFVNHGGVIFKVYVVGDHVKCVKRRSLP 205
>RPOC_BLOFL (Q7VRP8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1420 Score = 30.0 bits (66), Expect = 4.8 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -1 Query: 419 DRARGVVHDVIADTAQEHPLELAKAP 342 DR VV D++ D +EHP+ L +AP Sbjct: 404 DREESVVWDILEDVIKEHPVMLNRAP 429
>RPOC_THEFY (Q47LI6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1291 Score = 30.0 bits (66), Expect = 4.8 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Frame = -1 Query: 419 DRARGVVHDVIADTAQEHPLELAKAPAPND---QAADGHVMDGLA 294 +RAR VV DV+ + EHP+ L +AP + QA + +++G A Sbjct: 477 ERARPVVWDVLEEVISEHPVLLNRAPTLHRLGIQAFEPQLVEGKA 521
>Y531_METJA (Q57951) Hypothetical protein MJ0531| Length = 170 Score = 29.6 bits (65), Expect = 6.2 Identities = 17/76 (22%), Positives = 33/76 (43%) Frame = +3 Query: 204 ETLDMLNTIAKQKEVAVVSKVLFGDPREKLCQAIHDMPISCLVIXXXXXXXXXXXXXXXX 383 E L + +A++ V + +++L G P ++ + +V+ Sbjct: 90 EALKKVKKMAEEWGVKIHTEMLEGVPANEIVEFAEKKKADLIVMGTTGKTGLERILLGSV 149 Query: 384 SDYVVNNAACPVTVVK 431 ++ V+ NA CPV VVK Sbjct: 150 AERVIKNAHCPVLVVK 165
>RPOC_STRCO (Q8CJT1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1299 Score = 29.6 bits (65), Expect = 6.2 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Frame = -1 Query: 419 DRARGVVHDVIADTAQEHPLELAKAPAPND---QAADGHVMDGLA 294 +R R VV+DV+ + EHP+ L +AP + QA + +++G A Sbjct: 477 ERGRTVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKA 521
>RPOC_STRAW (Q82DQ4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1299 Score = 29.6 bits (65), Expect = 6.2 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Frame = -1 Query: 419 DRARGVVHDVIADTAQEHPLELAKAPAPND---QAADGHVMDGLA 294 +R R VV+DV+ + EHP+ L +AP + QA + +++G A Sbjct: 477 ERGRTVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKA 521
>RPOC_LEUPS (P94899) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) (Fragment) Length = 989 Score = 29.6 bits (65), Expect = 6.2 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = -1 Query: 419 DRARGVVHDVIADTAQEHPLELAKAP 342 D+A G V DV+ D +EHP+ L +AP Sbjct: 325 DKADGDVMDVLEDVIKEHPVLLNRAP 350
>RPOC_LEUME (P94892) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) (Fragment) Length = 989 Score = 29.6 bits (65), Expect = 6.2 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = -1 Query: 419 DRARGVVHDVIADTAQEHPLELAKAP 342 D+A G V DV+ D +EHP+ L +AP Sbjct: 325 DKADGDVMDVLEDVIKEHPVLLNRAP 350
>RPOC_PASMU (Q9CK92) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1417 Score = 29.3 bits (64), Expect = 8.1 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = -1 Query: 419 DRARGVVHDVIADTAQEHPLELAKAP 342 +R +V D++AD +EHP+ L +AP Sbjct: 403 EREDAIVWDILADVIREHPILLNRAP 428 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,018,313 Number of Sequences: 219361 Number of extensions: 1503262 Number of successful extensions: 4200 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4064 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4200 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
