ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal20k06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FLII_HUMAN (Q13045) Protein flightless-1 homolog 31 1.7
2FLII_MOUSE (Q9JJ28) Protein flightless-1 homolog 30 2.9
3YLB5_CAEEL (P46580) Hypothetical protein C34E10.5 in chromosome III 30 3.8
4RS12_ERYGR (O59936) 40S ribosomal protein S12 30 5.0
5CP270_RAT (P19225) Cytochrome P450 2C70 (EC 1.14.14.1) (CYPIIC70... 29 6.5

>FLII_HUMAN (Q13045) Protein flightless-1 homolog|
          Length = 1269

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
 Frame = -3

Query: 332 HEQRTLLPAYPLAGALHLCSTEHKSAQLDVSFHAGSNLN----HGHRQVFVGDYPVLWPE 165
           H Q   LPA      LHL ST+   + L  S    SNL       +    V +     P 
Sbjct: 188 HAQLRQLPAMTALQTLHLRSTQRTQSNLPTSLEGLSNLADVDLSCNDLTRVPECLYTLPS 247

Query: 164 SEQLNLTHNRQVFVGDYPVLWPEPEQLNLTHNCIT 60
             +LNL+ N+   +      W   E LNL+ N +T
Sbjct: 248 LRRLNLSSNQITELSLCIDQWVHVETLNLSRNQLT 282



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>FLII_MOUSE (Q9JJ28) Protein flightless-1 homolog|
          Length = 1271

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
 Frame = -3

Query: 332 HEQRTLLPAYPLAGALHLCSTEHKSAQLDVSFHAGSNLN----HGHRQVFVGDYPVLWPE 165
           H Q   LPA      LHL +T+   + L  S    SNL+      +    V +     P 
Sbjct: 188 HAQLRQLPAMMALQTLHLRNTQRTQSNLPTSLEGLSNLSDVDLSCNDLTRVPECLYTLPS 247

Query: 164 SEQLNLTHNRQVFVGDYPVLWPEPEQLNLTHNCIT 60
             +LNL+ N+   +      W   E LNL+ N +T
Sbjct: 248 LRRLNLSSNQIAELSLCIDQWVHLETLNLSRNQLT 282



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>YLB5_CAEEL (P46580) Hypothetical protein C34E10.5 in chromosome III|
          Length = 734

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 20/81 (24%), Positives = 38/81 (46%)
 Frame = -3

Query: 494 ASPRQGGRGRSIEAPASAVSARVSCAWLGRNKTSIESRCATKLSYELSCFCSTTHEQRTL 315
           +SP+     RSI +   A ++R+   W+    T+++   A  L   ++ FC+   E +  
Sbjct: 27  SSPKSNSPSRSISS-VEAANSRIHIGWMA---TTLD--VAENLDRHVATFCTRLGEFKYN 80

Query: 314 LPAYPLAGALHLCSTEHKSAQ 252
              YP+ G +    T + SA+
Sbjct: 81  FVVYPIGGVVRAFWTPNGSAE 101



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>RS12_ERYGR (O59936) 40S ribosomal protein S12|
          Length = 132

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 229 PA*KETSNWADLCSVLHRCSAPASGYAGKSVRCSCVVLQK--QESS 360
           P  K+   WA LC VL R      G A K V CSCVV++   +ESS
Sbjct: 80  PDGKQLGEWAGLC-VLDR-----EGNARKVVNCSCVVVKNWGEESS 119



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>CP270_RAT (P19225) Cytochrome P450 2C70 (EC 1.14.14.1) (CYPIIC70) (P-450Md)|
           (P450 P49)
          Length = 489

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +2

Query: 185 SLLQKLGDVHGSGSNQHERKHLIGLIYVLCYTDAVLRQADMLVKVCAVHVLCCKNRRVHM 364
           +L+  +GD+ G+G+         GL+ +L Y +   +  + + +V   H   C   R HM
Sbjct: 285 NLIVTIGDLFGAGTETTSSTIKYGLLLLLKYPEVTAKIQEEITRVIGRHRRPCMQDRNHM 344


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,934,760
Number of Sequences: 219361
Number of extensions: 1642174
Number of successful extensions: 3986
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3983
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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