>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  295 bits (755), Expect = 5e-80
 Identities = 146/149 (97%), Positives = 147/149 (98%)
 Frame = +1

Query: 64  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK 243
           MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK
Sbjct: 1   MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK 60

Query: 244 WKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGG 423
           WKGLAYDISDDQQDITRGKGIVDSLFQAPTG GTHEAVLSSYEYVSQGLRKYDFDNTMGG
Sbjct: 61  WKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGG 120

Query: 424 FYIAPAYMDKLVXHLSKNFMTLPNIKIPL 510
           FYIAPA+MDKLV HLSKNFMTLPNIKIPL
Sbjct: 121 FYIAPAFMDKLVVHLSKNFMTLPNIKIPL 149

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  262 bits (670), Expect = 4e-70
 Identities = 131/151 (86%), Positives = 139/151 (92%), Gaps = 2/151 (1%)
 Frame = +1

Query: 64  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTD- 240
           MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSS  NRF VMA E +DE + TD 
Sbjct: 1   MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSNINRFKVMAKE-LDEGKQTDQ 59

Query: 241 -KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTM 417
            +WKGLAYDISDDQQDITRGKG VDSLFQAPTGDGTHEAVLSSYEY+SQGLR YDFDNTM
Sbjct: 60  DRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTM 119

Query: 418 GGFYIAPAYMDKLVXHLSKNFMTLPNIKIPL 510
           GGFYIAP++MDKLV H+SKNFMTLPNIK+PL
Sbjct: 120 GGFYIAPSFMDKLVVHISKNFMTLPNIKVPL 150

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score =  226 bits (575), Expect = 4e-59
 Identities = 116/155 (74%), Positives = 132/155 (85%), Gaps = 6/155 (3%)
 Frame = +1

Query: 64  MAAAFSSTVGAPASTPT--NFLGKKLKK-QVTSAVNYHGKSSKAN-RFTVMAAENIDEKR 231
           MAAAFSSTVGAPASTPT  +FLGKKL K QV++AV YHGKSS +N RF  MAA+ +DE +
Sbjct: 1   MAAAFSSTVGAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETK 60

Query: 232 NTD--KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDF 405
            TD  +WKGLAYDISDDQQDITRGKG+VD+LFQAP GDGTH AVLSSY+Y+SQG + Y+F
Sbjct: 61  QTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNF 120

Query: 406 DNTMGGFYIAPAYMDKLVXHLSKNFMTLPNIKIPL 510
           DN M GFYIA  +MDKLV HLSKNFMTLPNIK+PL
Sbjct: 121 DNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPL 155

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  217 bits (553), Expect = 1e-56
 Identities = 112/153 (73%), Positives = 127/153 (83%), Gaps = 4/153 (2%)
 Frame = +1

Query: 64  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFT-VMAAEN-IDEKRNT 237
           MA+AFSSTVGAPASTPT FLGKK+K        YHG +   +R   VMAA+  +D+ + T
Sbjct: 1   MASAFSSTVGAPASTPTIFLGKKVKNY------YHGGNKMKSRVVRVMAAKKELDQGKQT 54

Query: 238 D--KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDN 411
           D  +WKGLAYDISDDQQDITRGKGIVDSLFQAP GDGTHEA+LSSYEY+SQGLRKYDFDN
Sbjct: 55  DADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDN 114

Query: 412 TMGGFYIAPAYMDKLVXHLSKNFMTLPNIKIPL 510
           TM G YIAPA+MDKL+ HL+KNFMTLPNIK+PL
Sbjct: 115 TMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPL 147

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score =  174 bits (442), Expect = 1e-43
 Identities = 89/144 (61%), Positives = 108/144 (75%)
 Frame = +1

Query: 79  SSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLA 258
           S  V APAST   FLGKK    V +   +   + K+N    + A   D++ + D+W+GLA
Sbjct: 23  SGAVSAPAST---FLGKK----VVTVSRFAQSNKKSNGSFKVLAVKEDKQTDGDRWRGLA 75

Query: 259 YDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAP 438
           YD SDDQQDITRGKG+VDS+FQAP G GTH AVLSSYEYVSQGLR+Y+ DN M GFYIAP
Sbjct: 76  YDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAP 135

Query: 439 AYMDKLVXHLSKNFMTLPNIKIPL 510
           A+MDKLV H++KNF+TLPNIK+PL
Sbjct: 136 AFMDKLVVHITKNFLTLPNIKVPL 159

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score =  173 bits (438), Expect = 3e-43
 Identities = 88/146 (60%), Positives = 109/146 (74%), Gaps = 2/146 (1%)
 Frame = +1

Query: 79  SSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK--WKG 252
           SS+   P+ST   FLG  LKK     VN    +SK +  ++    ++DE + TDK  WKG
Sbjct: 22  SSSASVPSST---FLGSSLKK-----VNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKG 73

Query: 253 LAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYI 432
           LA+D SDDQQDITRGKG VDSLFQAP G GTH A++SSYEY+S GLR+Y+FDN M G+YI
Sbjct: 74  LAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYI 133

Query: 433 APAYMDKLVXHLSKNFMTLPNIKIPL 510
           APA+MDKLV H++KNFMTLPN+K+PL
Sbjct: 134 APAFMDKLVVHITKNFMTLPNMKVPL 159

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score =  171 bits (434), Expect = 8e-43
 Identities = 89/160 (55%), Positives = 114/160 (71%), Gaps = 11/160 (6%)
 Frame = +1

Query: 64  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSK----------ANRFTVMAAE 213
           MAAA+S TVGA    P +  G   +  +  +  + G S K          +  F ++A E
Sbjct: 1   MAAAYS-TVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKASSGNFKIVAQE 59

Query: 214 -NIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGL 390
            + D++ + DKWKGLAYDISDDQQDITRGKG+VD+LFQAP   GTH AV+SSY+Y+SQGL
Sbjct: 60  ISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGL 119

Query: 391 RKYDFDNTMGGFYIAPAYMDKLVXHLSKNFMTLPNIKIPL 510
           R+Y+ DN M GFYIAPA+MDKLV H++KNF++LPNIKIPL
Sbjct: 120 RQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPL 159

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score =  171 bits (434), Expect = 8e-43
 Identities = 89/160 (55%), Positives = 114/160 (71%), Gaps = 11/160 (6%)
 Frame = +1

Query: 64  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSK----------ANRFTVMAAE 213
           MAAA+S TVGA    P +  G   +  +  +  + G S K          +  F ++A E
Sbjct: 1   MAAAYS-TVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKASSGNFKIVAQE 59

Query: 214 -NIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGL 390
            + D++ + DKWKGLAYDISDDQQDITRGKG+VD+LFQAP   GTH AV+SSY+Y+SQGL
Sbjct: 60  ISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGL 119

Query: 391 RKYDFDNTMGGFYIAPAYMDKLVXHLSKNFMTLPNIKIPL 510
           R+Y+ DN M GFYIAPA+MDKLV H++KNF++LPNIKIPL
Sbjct: 120 RQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPL 159

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score =  167 bits (423), Expect = 2e-41
 Identities = 90/159 (56%), Positives = 108/159 (67%), Gaps = 16/159 (10%)
 Frame = +1

Query: 82  STVGAPASTP--------------TNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENI 219
           ST+GA   TP              T F GK LKK     V+    ++K+ R  V    ++
Sbjct: 6   STIGAVNKTPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRI-VAEQIDV 64

Query: 220 DEKRNTD--KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLR 393
           D K+ TD  +WKGL  D SDDQQDITRGKG+VDSLFQAPTG GTH AVL SYEYVSQGLR
Sbjct: 65  DPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLR 124

Query: 394 KYDFDNTMGGFYIAPAYMDKLVXHLSKNFMTLPNIKIPL 510
           +Y+ DN + GFYIAPA+MDKLV H++KNF+ LPNIK+PL
Sbjct: 125 QYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPL 163

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score =  165 bits (417), Expect = 8e-41
 Identities = 86/150 (57%), Positives = 106/150 (70%), Gaps = 4/150 (2%)
 Frame = +1

Query: 73  AFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAE--NIDEKRNT--D 240
           + +++V   +   T F GK LKK     V+        NR   +AAE  + D K+ T  D
Sbjct: 17  SLNNSVAGTSVPSTAFFGKTLKKVYGKGVS---SPKVTNRSLRIAAEEKDADPKKQTYSD 73

Query: 241 KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMG 420
           +WKGL  D SDDQQDI RGKG+VDSLFQAPTG GTH AVL SYEYVSQGLR+Y+ DNT+ 
Sbjct: 74  RWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLD 133

Query: 421 GFYIAPAYMDKLVXHLSKNFMTLPNIKIPL 510
           GFYIAP++MDKLV H++KNF+ LPNIK+PL
Sbjct: 134 GFYIAPSFMDKLVVHITKNFLKLPNIKVPL 163

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score =  164 bits (414), Expect = 2e-40
 Identities = 84/143 (58%), Positives = 109/143 (76%), Gaps = 3/143 (2%)
 Frame = +1

Query: 91  GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNT--DKWKGLAY 261
           G  AS P++ F G  LKK ++S V  + K +  +   V A + I+E + T  D+W+GLAY
Sbjct: 22  GGGASGPSSAFFGTSLKKVISSRVP-NSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAY 80

Query: 262 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPA 441
           D+SDDQQDITRGKG+VDSLFQAP   GTH AV+SS++Y+S GLR+Y+FDN   GFYIAPA
Sbjct: 81  DVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPA 140

Query: 442 YMDKLVXHLSKNFMTLPNIKIPL 510
           ++DKLV H++KNFMTLPNIK+PL
Sbjct: 141 FLDKLVVHIAKNFMTLPNIKVPL 163

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score =  162 bits (409), Expect = 7e-40
 Identities = 85/161 (52%), Positives = 106/161 (65%), Gaps = 14/161 (8%)
 Frame = +1

Query: 70  AAFSSTVGAPASTP--------------TNFLGKKLKKQVTSAVNYHGKSSKANRFTVMA 207
           AA  ST+GA +  P              T F GK LKK     V+       +NR   + 
Sbjct: 2   AASVSTIGAASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVS---SPKVSNRNLRVV 58

Query: 208 AENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQG 387
           A+ +DE +  D+WKGL  + SDDQQDI RGKG+VDSLFQAPTG GTH A+++SYEYVSQ 
Sbjct: 59  AQEVDETKE-DRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQA 117

Query: 388 LRKYDFDNTMGGFYIAPAYMDKLVXHLSKNFMTLPNIKIPL 510
           L+ Y  DN + GFYIAPA+MDKLV H++KNF+TLPNIK+PL
Sbjct: 118 LKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPL 158

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score =  162 bits (409), Expect = 7e-40
 Identities = 87/140 (62%), Positives = 99/140 (70%), Gaps = 1/140 (0%)
 Frame = +1

Query: 94  APASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDIS 270
           A AS PT+ FLG  LKK           SS+    TV AAEN  E++NTDKW  LA D S
Sbjct: 23  AGASVPTSGFLGSSLKKHTNVRFP---SSSRTTSMTVKAAEN--EEKNTDKWAHLAKDFS 77

Query: 271 DDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAYMD 450
           DDQ DI RGKG+VDSLFQAP   GTH  + SS+EY SQGLRKYD DN +G FYIAPA+MD
Sbjct: 78  DDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMD 137

Query: 451 KLVXHLSKNFMTLPNIKIPL 510
           KLV H++KNF+ LPNIKIPL
Sbjct: 138 KLVVHITKNFLNLPNIKIPL 157

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score =  161 bits (407), Expect = 1e-39
 Identities = 88/143 (61%), Positives = 105/143 (73%), Gaps = 3/143 (2%)
 Frame = +1

Query: 91  GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNT--DKWKGLAY 261
           GA AS PT+ F G  LKK V S V  + K +  +   V A + I+E + T  D+WKGLAY
Sbjct: 22  GAGASAPTSAFFGTSLKKAVASRVP-NSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAY 80

Query: 262 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPA 441
           DISDDQQDITRGKG+VD LFQAP   GTH AV+SSYEY+S GLR+   DN   GFYIAPA
Sbjct: 81  DISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLRQ--LDNIKDGFYIAPA 138

Query: 442 YMDKLVXHLSKNFMTLPNIKIPL 510
           ++DKLV H++KNFMTLPNIK+PL
Sbjct: 139 FLDKLVVHITKNFMTLPNIKVPL 161

>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score =  160 bits (405), Expect = 2e-39
 Identities = 85/161 (52%), Positives = 106/161 (65%), Gaps = 14/161 (8%)
 Frame = +1

Query: 70  AAFSSTVGAPASTPTN------------FLGKKLKKQVTSAVNYHGKSSK--ANRFTVMA 207
           AA  ST+GA   T  N            FLG +LK      V+    +SK     F ++A
Sbjct: 2   AATVSTIGAVNRTTLNNSNYGGLVPNSAFLGSRLK------VSSRFTTSKMVTGNFKIVA 55

Query: 208 AENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQG 387
            ++ +++   DKW+GLA+D SDDQQDITRGKG+ D LFQAP G GTH AVLSSYEY+S G
Sbjct: 56  EQDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAG 115

Query: 388 LRKYDFDNTMGGFYIAPAYMDKLVXHLSKNFMTLPNIKIPL 510
           LR Y +DN + GFYIAPA+MDKL  H+ KNF+TLPNIK+PL
Sbjct: 116 LRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPL 156

>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score =  101 bits (251), Expect = 1e-21
 Identities = 51/98 (52%), Positives = 68/98 (69%), Gaps = 3/98 (3%)
 Frame = +1

Query: 226 KRNTDKWKGL--AYDISDDQQDITRGKGIVDSLFQAPTG-DGTHEAVLSSYEYVSQGLRK 396
           ++   +W+ +    D SDDQQDITRG+ +VD LFQ   G  GTH AVLSS EY+SQ   +
Sbjct: 37  RKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQS--R 94

Query: 397 YDFDNTMGGFYIAPAYMDKLVXHLSKNFMTLPNIKIPL 510
             F+N   GFYI+PA++DK+  H++KNFM LP IK+PL
Sbjct: 95  ASFNNIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPL 132

>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 415

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 15/29 (51%), Positives = 24/29 (82%)
 Frame = +1

Query: 424 FYIAPAYMDKLVXHLSKNFMTLPNIKIPL 510
           +YIAP ++DKL  H++KNF+ LP +++PL
Sbjct: 3   YYIAPRFLDKLAVHITKNFLNLPGVRVPL 31

>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 414

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 14/29 (48%), Positives = 24/29 (82%)
 Frame = +1

Query: 424 FYIAPAYMDKLVXHLSKNFMTLPNIKIPL 510
           +YIAP ++DKL  H++KNF+ +P +++PL
Sbjct: 3   YYIAPRFLDKLAVHITKNFLNIPGVRVPL 31

>PERI_XENLA (P48676) Peripherin (Neuronal intermediate filament IF3)|
          Length = 456

 Score = 32.7 bits (73), Expect = 0.60
 Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 14/122 (11%)
 Frame = +1

Query: 187 NRFTVMAAENIDEKRNTDKWKGLAYDISDD-----------QQDITRGKGIVDSLFQAPT 333
           +++  +AA+N+ E    D +K    D+SD            +QD+   +  + SL     
Sbjct: 260 SQYETIAAKNVQESE--DWYKSKFADLSDAANRNSEALRQAKQDMNESRRQIQSLTCEVD 317

Query: 334 G-DGTHEAVLSSYEYVSQ--GLRKYDFDNTMGGFYIAPAYMDKLVXHLSKNFMTLPNIKI 504
           G  GT+EA+L   + + +  G+   ++ +T+GG      +M + +    + +  L N+K+
Sbjct: 318 GLKGTNEALLRQMKNMEEQFGMEAANYQDTIGGLEQEVQHMKEEMSRHLREYQDLLNVKM 377

Query: 505 PL 510
            L
Sbjct: 378 AL 379

>PTR2_CANAL (P46030) Peptide transporter PTR2|
          Length = 623

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
 Frame = -2

Query: 341 PSPVGAWKSESTMPFPLVMSCW----SSEISYAR------PFHLSVFLFSSMFSAAMTV 195
           P+P+ AWK+ S         CW    + E++Y R          ++FL  S FSAA+++
Sbjct: 488 PAPITAWKASSLFILAAAGECWAYTTAYELAYTRSPPALKSLVYALFLVMSAFSAALSL 546

>RS3A_PICTO (Q6KYU3) 30S ribosomal protein S3Ae|
          Length = 209

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
 Frame = +1

Query: 94  APASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISD 273
           +PA+ P+  +G+K++  V+   ++ G   K++   +   +    KR T ++ G  + +SD
Sbjct: 35  SPAADPSLMIGRKVEVPVS---DFTGNFRKSSTMVIFRVKECTGKRCTTEFIG--HKVSD 89

Query: 274 D--QQDITRGKGIVDSLFQAPTGDG 342
           D  ++ + R K  +D +  + T DG
Sbjct: 90  DTIRRMVRRRKERIDIIMPSKTKDG 114

>PCRB_SULAC (Q4JAS3) Protein pcrB homolog|
          Length = 257

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = -1

Query: 429 VEASHGVVEVVLPQALADVLVGAEDGLVGAVARGRLEERVHDALPSGDVLLVVGDIVRK 253
           +EA  G  E V P+A+  V    +DG+V        EER  + + +G  ++V G+++ +
Sbjct: 176 LEAGSGASETVKPEAIKVVKNTVKDGVVIVGGGVTSEERARNLVLAGADIIVTGNVIER 234

>DPO3A_LACLA (Q9CI70) DNA polymerase III alpha subunit (EC 2.7.7.7)|
          Length = 1060

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
 Frame = +1

Query: 160  NYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGD 339
            N+H K +      + A +  D  R       LAY+++D    +       D +F A +G 
Sbjct: 807  NFHKKENILPLIQIGAFDYADSNRGK-----LAYNLADHANLLNYYS---DDIFMASSGG 858

Query: 340  GT--HEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAYMDKLVXHLSKNFMTLPNI 498
            G   HEA     E  S+   KYDF+  + G  + P  +  L      NF  L  +
Sbjct: 859  GFAYHEA-----EDYSE-TEKYDFEKNLLGIGVTPHPLQNLARRFEGNFTPLAQL 907

>CASZ1_MOUSE (Q9CWL2) Castor homolog 1 zinc finger protein (Castor-related|
           protein) (Fragment)
          Length = 255

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 40  QGRPSSTEMAAAFSSTVGAPASTPTNFLGKKLKKQV 147
           QG PS     +  +   G+PA  P+ FLGK +K  V
Sbjct: 52  QGNPSLESFLSIKTEAEGSPAGEPSPFLGKAVKALV 87

>RT107_YEAST (P38850) Regulator of Ty1 transposition protein 107|
          Length = 1070

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +1

Query: 172 KSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAP 330
           K  + +   +++ E++  K++TDK+  L   +SD+   I   K  V+S +  P
Sbjct: 688 KQGEESTGKLISTEDVTSKKDTDKFSHLFEGLSDNDDHINDEKPAVNSKYTTP 740

>TRIPC_HUMAN (Q14669) Thyroid receptor-interacting protein 12 (TRIP12)|
          Length = 1992

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +3

Query: 18  PRASPLLARSTKQHRDGCCLLLHRRGSG 101
           P   P L RST+Q   G C    RRGSG
Sbjct: 314 PAELPSLRRSTRQKTTGSCASTSRRGSG 341

>PTN13_MOUSE (Q64512) Tyrosine-protein phosphatase non-receptor type 13 (EC|
           3.1.3.48) (Protein tyrosine phosphatase PTP-BL)
           (Protein-tyrosine phosphatase RIP) (protein tyrosine
           phosphatase DPZPTP) (PTP36)
          Length = 2453

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 262 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRK 396
           D S   +D  RGKG+            THEA LS   +V++GL K
Sbjct: 195 DRSQAIRDRLRGKGLPTGRSSTSDALDTHEAPLSQQTFVNKGLSK 239

>UDB15_HUMAN (P54855) UDP-glucuronosyltransferase 2B15 precursor (EC 2.4.1.17)|
           (UDPGT) (UDPGTh-3) (HLUG4)
          Length = 530

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 397 YDFDNTMGGFYIAPAYMDKLVXHLSKNFMTLPNIKIPLH 513
           Y F+   GGF   P+Y+  ++  LS   + +  IK  +H
Sbjct: 179 YTFEKNGGGFLFPPSYVPVVMSELSDQMIFMERIKNMIH 217

>TRPC_HALVO (P18304) Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS)|
          Length = 251

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = -1

Query: 429 VEASHGVVEVVLPQALADVLVGAEDGLVGAVARGRLEERVHDALPSGDVLLVVGDIVRKT 250
           +E   G  E + P+A  DVL+ AE G+       R+ E   DAL  G  ++  GD+ + T
Sbjct: 188 LEVDLGTFEELAPEAPEDVLLVAESGVQTVDDARRMREAGADALLVGTAIM-DGDVRQNT 246

>DHOM_HELPJ (Q9ZL20) Homoserine dehydrogenase (EC 1.1.1.3) (HDH)|
          Length = 421

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 229 RNTDKWKGLAYDISDDQQDITRGKGI 306
           R+  K KG A++ISDD + +   KGI
Sbjct: 46  RDVKKHKGYAFEISDDLESVIEDKGI 71


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,174,850
Number of Sequences: 219361
Number of extensions: 1236721
Number of successful extensions: 4404
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 4293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4393
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3869946934
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)