>HEM13_HORVU (O65796) Glutamyl-tRNA reductase 3, chloroplast precursor (EC|
           1.2.1.70) (GluTR)
          Length = 535

 Score = 30.8 bits (68), Expect = 0.89
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +1

Query: 97  IAATAGKSSSAAMAVDAAGGVEKPRFDALMPSEMSGGR 210
           +A+T+  S++A     AA GV KPR  A  P   +GGR
Sbjct: 1   MASTSTASATAMAGAFAAAGVNKPRGSAACPRVPAGGR 38

>DCTP_RHOCA (P37735) C4-dicarboxylate-binding periplasmic protein precursor|
          Length = 333

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 16/73 (21%), Positives = 31/73 (42%)
 Frame = +1

Query: 85  DKAPIAATAGKSSSAAMAVDAAGGVEKPRFDALMPSEMSGGRPQYRKVQVPPHRFAPLKK 264
           D  P     G   + A + D A G+ K   +  + +    G  ++ ++       A  + 
Sbjct: 249 DGLPADVRTGLEKAMAESTDYANGIAKEENEKALQAMKDAGTTEFHELT------AEERA 302

Query: 265 AWLDIYTPVYEHM 303
           AW ++ TPV++ M
Sbjct: 303 AWEEVLTPVHDEM 315

>NCOA2_MOUSE (Q61026) Nuclear receptor coactivator 2 (NCoA-2) (Transcriptional|
            intermediary factor 2) (Glucocorticoid
            receptor-interacting protein 1) (GRIP-1)
          Length = 1462

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 193  EMSGGRPQYRKVQVPPHRFAPLKKAWLDI 279
            EM+ G PQY + Q PP++ AP  ++ L I
Sbjct: 1015 EMNMGGPQYNQQQAPPNQTAPWPESILPI 1043

>NCOA2_RAT (Q9WUI9) Nuclear receptor coactivator 2 (NCoA-2) (Transcriptional|
            intermediary factor 2)
          Length = 1465

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 193  EMSGGRPQYRKVQVPPHRFAPLKKAWLDI 279
            EM+ G PQY + Q PP++ AP  ++ L I
Sbjct: 1015 EMNMGGPQYNQQQAPPNQTAPWPESILPI 1043

>H1_LYTPI (P06144) Late histone H1|
          Length = 210

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 20/65 (30%), Positives = 28/65 (43%)
 Frame = +1

Query: 73  QMEVDKAPIAATAGKSSSAAMAVDAAGGVEKPRFDALMPSEMSGGRPQYRKVQVPPHRFA 252
           Q E   A   A   K ++   A  AA  V+KP   A  P++ +  +P  +K    P    
Sbjct: 118 QKEKKAAKTKARKEKLAAKKAAKKAAKKVKKPAAKAKKPAKKAAKKPAAKKAAKKPAAKK 177

Query: 253 PLKKA 267
           P KKA
Sbjct: 178 PAKKA 182

>NCOA2_HUMAN (Q15596) Nuclear receptor coactivator 2 (NCoA-2) (Transcriptional|
            intermediary factor 2)
          Length = 1464

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 193  EMSGGRPQYRKVQVPPHRFAPLKKAWLDI 279
            EM+ G PQY + Q PP++ AP  ++ L I
Sbjct: 1015 EMNMGGPQYSQQQAPPNQTAPWPESILPI 1043

>CI138_MACFA (Q4R7D3) Protein C9orf138 homolog|
          Length = 474

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 12/58 (20%)
 Frame = +1

Query: 166 PRFDALMPSEMSGGRPQYRKVQVP------------PHRFAPLKKAWLDIYTPVYEHM 303
           P + + +P E    R +Y+K  +P            PH+ AP+K    D + P  E+M
Sbjct: 42  PCYHSYLPRESFKPRREYQKGSIPMEGLTTSRRDFGPHKVAPVKAHQYDQFVPSEENM 99

>CUT_DROME (P10180) Homeobox protein cut|
          Length = 2175

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 94   PIAATAGKSSSAAMAVDAAGGVEKPRFDALMPSEMSG 204
            P AA A  +++AA AV A+GG E    +     +MSG
Sbjct: 1874 PGAAAAAGAAAAAAAVGASGGDELQALNQAFKEQMSG 1910

>CI138_HUMAN (Q8IYX7) Protein C9orf138|
          Length = 474

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 12/58 (20%)
 Frame = +1

Query: 166 PRFDALMPSEMSGGRPQYRKVQVP------------PHRFAPLKKAWLDIYTPVYEHM 303
           P + + +P E    R +Y+K  +P            PH+ AP+K    D + P  E+M
Sbjct: 42  PFYHSYLPRESFKPRREYQKGPIPMEGLTTSRRDFGPHKVAPVKVHQYDQFVPSEENM 99

>PRIM_PSEPU (P0A119) DNA primase (EC 2.7.7.-)|
          Length = 660

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +1

Query: 151 GGVEKPRFDALMPSEMSGGRPQYRKVQVPPHRFAPLKKAWLDIYTPVYEH 300
           GG +KP  D        GG+P  ++ + PP   AP++   L     +  H
Sbjct: 483 GGSKKPWSDKPWDKNRKGGKPWQQRDEAPPRVPAPVEPPTLAALRTLLHH 532

>PRIM_PSEPK (P0A118) DNA primase (EC 2.7.7.-)|
          Length = 660

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +1

Query: 151 GGVEKPRFDALMPSEMSGGRPQYRKVQVPPHRFAPLKKAWLDIYTPVYEH 300
           GG +KP  D        GG+P  ++ + PP   AP++   L     +  H
Sbjct: 483 GGSKKPWSDKPWDKNRKGGKPWQQRDEAPPRVPAPVEPPTLAALRTLLHH 532


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,109,909
Number of Sequences: 219361
Number of extensions: 477419
Number of successful extensions: 1650
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1649
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)