ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal20i16 |
|---|---|
| Clone Library Name | barley_pub |
>PSAF_HORVU (P13192) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 235 Score = 156 bits (395), Expect = 2e-38 Identities = 76/78 (97%), Positives = 76/78 (97%) Frame = +1 Query: 19 GRVITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA 198 G ITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA Sbjct: 158 GEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA 217 Query: 199 YRELINGDLVVDDADIGY 252 YRELINGDLVVDDADIGY Sbjct: 218 YRELINGDLVVDDADIGY 235
>PSAF_SPIOL (P12355) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 231 Score = 114 bits (284), Expect = 1e-25 Identities = 52/70 (74%), Positives = 60/70 (85%) Frame = +1 Query: 19 GRVITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA 198 G ITPG+LFLYIAGWIGWVGRSYLIA+ EKKP +EIIIDV LA+ ++ RGF WPVAA Sbjct: 158 GEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLASSLLFRGFSWPVAA 217 Query: 199 YRELINGDLV 228 YREL+NG+LV Sbjct: 218 YRELLNGELV 227
>PSAF_FLATR (P46486) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 232 Score = 112 bits (280), Expect = 4e-25 Identities = 50/70 (71%), Positives = 59/70 (84%) Frame = +1 Query: 19 GRVITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA 198 G ITPG+LFLYIAGWIGWVGRSYLIA+ EKKP +EIIIDV LA +++ RGF WPVAA Sbjct: 159 GEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLATKLLFRGFSWPVAA 218 Query: 199 YRELINGDLV 228 YRE +NG+L+ Sbjct: 219 YREYLNGELI 228
>PSAF_PORPU (P51193) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 90.5 bits (223), Expect = 2e-18 Identities = 39/76 (51%), Positives = 54/76 (71%) Frame = +1 Query: 19 GRVITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA 198 G + PG+LFLYI GWIGWVGR YL++V+ KP +EII+DV LA + + GF WP+AA Sbjct: 105 GDFVFPGLLFLYITGWIGWVGRGYLLSVAKTSKPTEKEIILDVPLAVKFMSSGFAWPLAA 164 Query: 199 YRELINGDLVVDDADI 246 ++E +G L+ + DI Sbjct: 165 WQEFSSGQLIAPNDDI 180
>PSAF_SYNY3 (P29256) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 165 Score = 89.4 bits (220), Expect = 3e-18 Identities = 40/76 (52%), Positives = 55/76 (72%) Frame = +1 Query: 19 GRVITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA 198 G + P +LFLYIAGWIGWVGRSYLI + K P M+E++I+V LA + + GF+WP+AA Sbjct: 85 GDFLIPSILFLYIAGWIGWVGRSYLIEIRESKNPEMQEVVINVPLAIKKMLGGFLWPLAA 144 Query: 199 YRELINGDLVVDDADI 246 E +G LV+ D++I Sbjct: 145 VGEYTSGKLVMKDSEI 160
>PSAF_SYNEN (P0A402) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 87.8 bits (216), Expect = 1e-17 Identities = 42/76 (55%), Positives = 53/76 (69%) Frame = +1 Query: 19 GRVITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA 198 G + P VLFLYIAGWIGWVGR+YLIAV + +EIIIDV LA + + GF WP+AA Sbjct: 84 GDFLIPSVLFLYIAGWIGWVGRAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAA 143 Query: 199 YRELINGDLVVDDADI 246 +EL +G+L D +I Sbjct: 144 LKELASGELTAKDNEI 159
>PSAF_SYNEL (P0A401) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 87.8 bits (216), Expect = 1e-17 Identities = 42/76 (55%), Positives = 53/76 (69%) Frame = +1 Query: 19 GRVITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA 198 G + P VLFLYIAGWIGWVGR+YLIAV + +EIIIDV LA + + GF WP+AA Sbjct: 84 GDFLIPSVLFLYIAGWIGWVGRAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAA 143 Query: 199 YRELINGDLVVDDADI 246 +EL +G+L D +I Sbjct: 144 LKELASGELTAKDNEI 159
>PSAF_ODOSI (P49483) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 87.4 bits (215), Expect = 1e-17 Identities = 40/73 (54%), Positives = 53/73 (72%) Frame = +1 Query: 28 ITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRE 207 I PG F+YI+GWIGWVGR YL AVS K P EIII+V LA +I+ G+IWP++A++E Sbjct: 108 ILPGFGFIYISGWIGWVGRKYLRAVSTTKNPTESEIIINVPLALKIMTTGYIWPISAWQE 167 Query: 208 LINGDLVVDDADI 246 I+ DLV D ++ Sbjct: 168 FISNDLVALDEEV 180
>PSAF_GUITH (O78457) Photosystem I reaction center subunit III (PSI-F)| Length = 183 Score = 86.3 bits (212), Expect = 3e-17 Identities = 38/76 (50%), Positives = 52/76 (68%) Frame = +1 Query: 19 GRVITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA 198 G + PG+ FLYIAGWIGWVGR+Y+ S KP +EIIIDV +A I G+IWP AA Sbjct: 103 GEFMVPGLFFLYIAGWIGWVGRNYVQFASQTDKPTEKEIIIDVPVALSFISTGYIWPFAA 162 Query: 199 YRELINGDLVVDDADI 246 ++E +G+L+ + +I Sbjct: 163 FKEFTSGNLIAKEDEI 178
>PSAF_SYNP6 (P31083) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 159 Score = 85.1 bits (209), Expect = 7e-17 Identities = 40/76 (52%), Positives = 52/76 (68%) Frame = +1 Query: 19 GRVITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA 198 G I P +LFLYIAGWIGWVGRSYL A+ +K A +EI+IDV LA + GF WP+AA Sbjct: 79 GDFIIPSLLFLYIAGWIGWVGRSYLQAIKSDKDAAGKEIVIDVPLAVKFSLTGFAWPLAA 138 Query: 199 YRELINGDLVVDDADI 246 ++E +G L+ +I Sbjct: 139 FQEFSSGKLLAKADEI 154
>PSAF_ANAVT (P31091) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 85.1 bits (209), Expect = 7e-17 Identities = 38/76 (50%), Positives = 52/76 (68%) Frame = +1 Query: 19 GRVITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA 198 G + P +LFLYIAGWIGWVGR+YL A+ + +EI +D+ LA II GF WP AA Sbjct: 84 GDFLIPSILFLYIAGWIGWVGRAYLQAIKKDSDTEQKEIQLDLGLALPIIATGFAWPAAA 143 Query: 199 YRELINGDLVVDDADI 246 +EL++G+L D++I Sbjct: 144 VKELLSGELTAKDSEI 159
>PSAF_ANASP (P58564) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 84.3 bits (207), Expect = 1e-16 Identities = 37/76 (48%), Positives = 52/76 (68%) Frame = +1 Query: 19 GRVITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA 198 G + P +LFLYIAGWIGWVGR+YL A+ + +EI +D+ +A II GF WP AA Sbjct: 84 GDFLIPSILFLYIAGWIGWVGRAYLQAIKKDSDTEQKEIQLDLGIALPIIATGFAWPAAA 143 Query: 199 YRELINGDLVVDDADI 246 +EL++G+L D++I Sbjct: 144 VKELLSGELTAKDSEI 159
>PSAF_CYAPA (P48115) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 186 Score = 80.9 bits (198), Expect = 1e-15 Identities = 37/76 (48%), Positives = 51/76 (67%) Frame = +1 Query: 19 GRVITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA 198 G PG+LFLYIAG+IGW GRSYL AV+ +EIIID+ +A + + +GF+WP+AA Sbjct: 106 GEFTIPGLLFLYIAGFIGWSGRSYLQAVAASDNSTEKEIIIDIPVALQSVSKGFVWPLAA 165 Query: 199 YRELINGDLVVDDADI 246 +E +G L D +I Sbjct: 166 LQEFSSGKLTARDEEI 181
>PSAF_CHLRE (P12356) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) (P21 protein) Length = 227 Score = 78.6 bits (192), Expect = 6e-15 Identities = 40/76 (52%), Positives = 52/76 (68%) Frame = +1 Query: 19 GRVITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA 198 G V P FLY+AG+IG+VGR YLIAV GE KP +EIIIDV LA ++ +G WP+AA Sbjct: 147 GEVFIPTFGFLYVAGYIGYVGRQYLIAVKGEAKPTDKEIIIDVPLATKLAWQGAGWPLAA 206 Query: 199 YRELINGDLVVDDADI 246 +EL G L+ + +I Sbjct: 207 VQELQRGTLLEKEENI 222
>PSAF_MASLA (O31127) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 165 Score = 73.6 bits (179), Expect = 2e-13 Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 1/77 (1%) Frame = +1 Query: 19 GRVITPGVLFLYIAGWIGWVGRSYLIAVSGE-KKPAMREIIIDVELAARIIPRGFIWPVA 195 G + P +LFLYIAGWIGWVGR+YL + + +EI I++ +A I+ GF WP A Sbjct: 84 GDFLIPSILFLYIAGWIGWVGRAYLQTIKKQGSNVEQKEIQIELPIALPIMLSGFAWPAA 143 Query: 196 AYRELINGDLVVDDADI 246 A +E ++G+L D +I Sbjct: 144 AIKEFLSGELTAKDEEI 160
>PSAF_CYACA (Q9TLW6) Photosystem I reaction center subunit III (PSI-F)| Length = 187 Score = 72.0 bits (175), Expect = 6e-13 Identities = 34/76 (44%), Positives = 44/76 (57%) Frame = +1 Query: 19 GRVITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA 198 G P VLF+YIAGWIGW G+ YL KP EIIID+ A + + GF WP+ A Sbjct: 107 GEFFIPSVLFIYIAGWIGWAGKGYLQYSKTLTKPNENEIIIDLPRALKYMFSGFAWPILA 166 Query: 199 YRELINGDLVVDDADI 246 +E NG L+ + +I Sbjct: 167 LKEFKNGSLLASNDEI 182
>PSAF_PROMA (Q9X7I4) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 183 Score = 69.7 bits (169), Expect = 3e-12 Identities = 35/76 (46%), Positives = 47/76 (61%) Frame = +1 Query: 19 GRVITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA 198 G ++ PG +F+Y+AG IGW GR YL A K PA EIIID LA + + +G WPV A Sbjct: 102 GDILIPGHIFIYVAGIIGWSGREYLRASKKTKNPAENEIIIDFALARQCLIKGAAWPVEA 161 Query: 199 YRELINGDLVVDDADI 246 ++ +GDL D +I Sbjct: 162 NKQGRSGDLREKDENI 177
>PSAF_GLOVI (Q7NH05) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 181 Score = 60.8 bits (146), Expect = 1e-09 Identities = 34/73 (46%), Positives = 43/73 (58%) Frame = +1 Query: 19 GRVITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA 198 G + P VLFL+IAG +GW GR YL E K EIIID+ A + + G IWPV A Sbjct: 105 GDFLIPSVLFLWIAGALGWAGRLYL----AESKGPEDEIIIDLPKAIKCLLLGLIWPVQA 160 Query: 199 YRELINGDLVVDD 237 ELI+G + V + Sbjct: 161 IPELISGKIRVPE 173
>RDRP_MRNV (Q6XNL5) RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (RNA| replicase) Length = 1045 Score = 30.8 bits (68), Expect = 1.5 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = +1 Query: 283 SRSQVRWAAEDEGLWCRSVWAWCRS**DHGEMEPLLYLRN 402 S +QV + + G W VW WC D+GE LYL+N Sbjct: 217 SDNQVDYRVDGGGRWQHKVWNWC----DYGE---FLYLKN 249
>MADCA_HUMAN (Q13477) Mucosal addressin cell adhesion molecule 1 precursor| (MAdCAM-1) (hMAdCAM-1) Length = 406 Score = 29.6 bits (65), Expect = 3.2 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = -3 Query: 409 GFSFLNTREVPFLHDPISSYTKPTQIDTTSPHPP 308 G + + +P LH P T P DTTSP PP Sbjct: 212 GLELSHRQAIPVLHSP----TSPEPPDTTSPEPP 241
>YHBP_ECO57 (Q8XA94) UPF0306 protein yhbP| Length = 147 Score = 29.3 bits (64), Expect = 4.2 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = +1 Query: 256 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 342 L A+ WLA + V W + EG LWC + + Sbjct: 4 LTAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_ECOL6 (Q8FD95) UPF0306 protein yhbP| Length = 140 Score = 29.3 bits (64), Expect = 4.2 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = +1 Query: 256 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 342 L A+ WLA + V W + EG LWC + + Sbjct: 4 LTAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_SHIFL (P67763) UPF0306 protein yhbP| Length = 147 Score = 28.9 bits (63), Expect = 5.5 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = +1 Query: 256 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 342 L A+ WLA + V W + EG LWC + + Sbjct: 4 LIAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_ECOLI (P67762) UPF0306 protein yhbP| Length = 147 Score = 28.9 bits (63), Expect = 5.5 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = +1 Query: 256 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 342 L A+ WLA + V W + EG LWC + + Sbjct: 4 LIAISRWLAKQHVVTWCVQQEGELWCANAF 33
>AGI_URTDI (P11218) Lectin/endochitinase precursor (EC 3.2.1.14) (Agglutinin)| (UDA) Length = 372 Score = 28.1 bits (61), Expect = 9.4 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = +1 Query: 322 LWCRSVWAWCRS**DHGEMEP 384 LWC S+W WC G+ EP Sbjct: 38 LWCCSIWGWC------GDSEP 52
>PPZ1_YEAST (P26570) Serine/threonine-protein phosphatase PP-Z1 (EC 3.1.3.16)| Length = 691 Score = 28.1 bits (61), Expect = 9.4 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = -2 Query: 350 HQAHTDRHHKPSSSAAH 300 H +HT+R+H PSSS +H Sbjct: 79 HSSHTNRYHFPSSSHSH 95 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,588,919 Number of Sequences: 219361 Number of extensions: 969133 Number of successful extensions: 3207 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 2980 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3199 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
