ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal20h02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_465873.1| Oryza sativa (japonica cultivar-group), mRNA 139 8e-30
2dbj|AK102956.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 8e-30
3dbj|AK062243.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 8e-30
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
5dbj|AP005285.2| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
6gb|AY107699.1| Zea mays PCO077134 mRNA sequence 88 3e-14
7gb|AY110441.1| Zea mays CL14665_2 mRNA sequence 78 3e-11
8gb|AC182658.2| Populus trichocarpa clone Pop1-124E10, complete s... 44 0.36
9gb|AY628385.1| Mangifera indica clone LMMA13 microsatellite sequ... 44 0.36
10emb|AL049690.20|HSJ1060K6 Human DNA sequence from clone RP5-1060... 42 1.4
11ref|XM_508892.1| PREDICTED: Pan troglodytes similar to formin bi... 40 5.7
12ref|NM_015308.1| Homo sapiens formin binding protein 4 (FNBP4), ... 40 5.7
13gb|BC006557.2| Homo sapiens formin binding protein 4, mRNA (cDNA... 40 5.7
14emb|AL137480.1|HSM802205 Homo sapiens mRNA; cDNA DKFZp434M2023 (... 40 5.7
15gb|BC037404.1| Homo sapiens formin binding protein 4, mRNA (cDNA... 40 5.7
16dbj|AK123898.1| Homo sapiens cDNA FLJ41904 fis, clone PEBLM20056... 40 5.7
17dbj|AK054636.1| Homo sapiens cDNA FLJ30074 fis, clone BGGI110001... 40 5.7
18dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 40 5.7
19gb|AC021443.27| Homo sapiens chromosome 11, clone RP11-692M12, c... 40 5.7
20emb|AL359680.4|CNS05TEY Human chromosome 14 DNA sequence BAC R-7... 40 5.7
21emb|AL672284.15| Mouse DNA sequence from clone RP23-39I7 on chro... 40 5.7
22dbj|AB023231.2| Homo sapiens mRNA for KIAA1014 protein, partial cds 40 5.7 
>ref|XM_465873.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1580

 Score =  139 bits (70), Expect = 8e-30
 Identities = 231/280 (82%), Gaps = 6/280 (2%)
 Strand = Plus / Plus

                                                                        
Query: 1    aagagggctttccaa-cactccttacctacatcggaaacgtggttaaaaaccccgacgag 59
            ||||||||||| ||| |||||||||||||||| || || || | |||||| || ||||||
Sbjct: 1084 aagagggcttttcaaacactccttacctacattggcaatgtagctaaaaatcctgacgag 1143

                                                                        
Query: 60   gagaaatt-agaaagat-agacttaccaatgctacattccaggagagagttgcgagcct- 116
            |||||||| || ||||| ||||| ||||| |||||||| |||||||| ||||  |  || 
Sbjct: 1144 gagaaattcaggaagatcagactgaccaacgctacatttcaggagagggttggcaatctg 1203

                                                                        
Query: 117  --tggaggcatagagtttcttgagctgtgcgggttcgagaaaccggaaggtgaagagatc 174
              ||||||||||||||||||  |||| || || || |||||||  |||||  | ||| ||
Sbjct: 1204 catggaggcatagagtttctccagctctgtggatttgagaaacttgaaggcaacgagttc 1263

                                                                        
Query: 175  ttgtttctggcaagggacaaggttgacaaagccgtcctgaatgtagctggagccgagctc 234
            |||||  |||||||||||||||||||||| |||||||||||    |||||||||||||| 
Sbjct: 1264 ttgttcttggcaagggacaaggttgacaaggccgtcctgaacactgctggagccgagctg 1323

                                                    
Query: 235  aactcggccatcaccaatcctttcttcggagtcctctaaa 274
            || || || ||||| ||||||||||| |||||||| ||||
Sbjct: 1324 aattctgctatcactaatcctttctttggagtcctttaaa 1363
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>dbj|AK102956.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115G09, full
            insert sequence
          Length = 1580

 Score =  139 bits (70), Expect = 8e-30
 Identities = 231/280 (82%), Gaps = 6/280 (2%)
 Strand = Plus / Plus

                                                                        
Query: 1    aagagggctttccaa-cactccttacctacatcggaaacgtggttaaaaaccccgacgag 59
            ||||||||||| ||| |||||||||||||||| || || || | |||||| || ||||||
Sbjct: 1084 aagagggcttttcaaacactccttacctacattggcaatgtagctaaaaatcctgacgag 1143

                                                                        
Query: 60   gagaaatt-agaaagat-agacttaccaatgctacattccaggagagagttgcgagcct- 116
            |||||||| || ||||| ||||| ||||| |||||||| |||||||| ||||  |  || 
Sbjct: 1144 gagaaattcaggaagatcagactgaccaacgctacatttcaggagagggttggcaatctg 1203

                                                                        
Query: 117  --tggaggcatagagtttcttgagctgtgcgggttcgagaaaccggaaggtgaagagatc 174
              ||||||||||||||||||  |||| || || || |||||||  |||||  | ||| ||
Sbjct: 1204 catggaggcatagagtttctccagctctgtggatttgagaaacttgaaggcaacgagttc 1263

                                                                        
Query: 175  ttgtttctggcaagggacaaggttgacaaagccgtcctgaatgtagctggagccgagctc 234
            |||||  |||||||||||||||||||||| |||||||||||    |||||||||||||| 
Sbjct: 1264 ttgttcttggcaagggacaaggttgacaaggccgtcctgaacactgctggagccgagctg 1323

                                                    
Query: 235  aactcggccatcaccaatcctttcttcggagtcctctaaa 274
            || || || ||||| ||||||||||| |||||||| ||||
Sbjct: 1324 aattctgctatcactaatcctttctttggagtcctttaaa 1363
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>dbj|AK062243.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E12, full
           insert sequence
          Length = 940

 Score =  139 bits (70), Expect = 8e-30
 Identities = 231/280 (82%), Gaps = 6/280 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagagggctttccaa-cactccttacctacatcggaaacgtggttaaaaaccccgacgag 59
           ||||||||||| ||| |||||||||||||||| || || || | |||||| || ||||||
Sbjct: 458 aagagggcttttcaaacactccttacctacattggcaatgtagctaaaaatcctgacgag 517

                                                                       
Query: 60  gagaaatt-agaaagat-agacttaccaatgctacattccaggagagagttgcgagcct- 116
           |||||||| || ||||| ||||| ||||| |||||||| |||||||| ||||  |  || 
Sbjct: 518 gagaaattcaggaagatcagactgaccaacgctacatttcaggagagggttggcaatctg 577

                                                                       
Query: 117 --tggaggcatagagtttcttgagctgtgcgggttcgagaaaccggaaggtgaagagatc 174
             ||||||||||||||||||  |||| || || || |||||||  |||||  | ||| ||
Sbjct: 578 catggaggcatagagtttctccagctctgtggatttgagaaacttgaaggcaacgagttc 637

                                                                       
Query: 175 ttgtttctggcaagggacaaggttgacaaagccgtcctgaatgtagctggagccgagctc 234
           |||||  |||||||||||||||||||||| |||||||||||    |||||||||||||| 
Sbjct: 638 ttgttcttggcaagggacaaggttgacaaggccgtcctgaacactgctggagccgagctg 697

                                                   
Query: 235 aactcggccatcaccaatcctttcttcggagtcctctaaa 274
           || || || ||||| ||||||||||| |||||||| ||||
Sbjct: 698 aattctgctatcactaatcctttctttggagtcctttaaa 737
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  107 bits (54), Expect = 3e-20
 Identities = 132/158 (83%)
 Strand = Plus / Plus

                                                                            
Query: 117      tggaggcatagagtttcttgagctgtgcgggttcgagaaaccggaaggtgaagagatctt 176
                ||||||||||||||||||  |||| || || || |||||||  |||||  | ||| ||||
Sbjct: 18035574 tggaggcatagagtttctccagctctgtggatttgagaaacttgaaggcaacgagttctt 18035633

                                                                            
Query: 177      gtttctggcaagggacaaggttgacaaagccgtcctgaatgtagctggagccgagctcaa 236
                |||  |||||||||||||||||||||| |||||||||||    |||||||||||||| ||
Sbjct: 18035634 gttcttggcaagggacaaggttgacaaggccgtcctgaacactgctggagccgagctgaa 18035693

                                                      
Query: 237      ctcggccatcaccaatcctttcttcggagtcctctaaa 274
                 || || ||||| ||||||||||| |||||||| ||||
Sbjct: 18035694 ttctgctatcactaatcctttctttggagtcctttaaa 18035731



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 88/103 (85%), Gaps = 3/103 (2%)
 Strand = Plus / Plus

                                                                            
Query: 1        aagagggctttccaa-cactccttacctacatcggaaacgtggttaaaaaccccgacgag 59
                ||||||||||| ||| |||||||||||||||| || || || | |||||| || ||||||
Sbjct: 18035354 aagagggcttttcaaacactccttacctacattggcaatgtagctaaaaatcctgacgag 18035413

                                                           
Query: 60       gagaaatt-agaaagat-agacttaccaatgctacattccagg 100
                |||||||| || ||||| ||||| ||||| |||||||| ||||
Sbjct: 18035414 gagaaattcaggaagatcagactgaccaacgctacatttcagg 18035456
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>dbj|AP005285.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1003_F04
          Length = 139563

 Score =  107 bits (54), Expect = 3e-20
 Identities = 132/158 (83%)
 Strand = Plus / Plus

                                                                         
Query: 117   tggaggcatagagtttcttgagctgtgcgggttcgagaaaccggaaggtgaagagatctt 176
             ||||||||||||||||||  |||| || || || |||||||  |||||  | ||| ||||
Sbjct: 97168 tggaggcatagagtttctccagctctgtggatttgagaaacttgaaggcaacgagttctt 97227

                                                                         
Query: 177   gtttctggcaagggacaaggttgacaaagccgtcctgaatgtagctggagccgagctcaa 236
             |||  |||||||||||||||||||||| |||||||||||    |||||||||||||| ||
Sbjct: 97228 gttcttggcaagggacaaggttgacaaggccgtcctgaacactgctggagccgagctgaa 97287

                                                   
Query: 237   ctcggccatcaccaatcctttcttcggagtcctctaaa 274
              || || ||||| ||||||||||| |||||||| ||||
Sbjct: 97288 ttctgctatcactaatcctttctttggagtcctttaaa 97325



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 88/103 (85%), Gaps = 3/103 (2%)
 Strand = Plus / Plus

                                                                         
Query: 1     aagagggctttccaa-cactccttacctacatcggaaacgtggttaaaaaccccgacgag 59
             ||||||||||| ||| |||||||||||||||| || || || | |||||| || ||||||
Sbjct: 96948 aagagggcttttcaaacactccttacctacattggcaatgtagctaaaaatcctgacgag 97007

                                                        
Query: 60    gagaaatt-agaaagat-agacttaccaatgctacattccagg 100
             |||||||| || ||||| ||||| ||||| |||||||| ||||
Sbjct: 97008 gagaaattcaggaagatcagactgaccaacgctacatttcagg 97050
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>gb|AY107699.1| Zea mays PCO077134 mRNA sequence
          Length = 916

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 98/112 (87%), Gaps = 3/112 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagagggc-tttccaacactccttacctacatcggaaacgtggttaaaaaccccgacgag 59
           |||||||| |||| |||||||||||| ||||| |||||||| | |||||| || ||||||
Sbjct: 449 aagagggcatttcaaacactccttacttacattggaaacgttgctaaaaatcctgacgag 508

                                                               
Query: 60  gagaaa-ttagaaagat-agacttaccaatgctacattccaggagagagttg 109
           |||||| |||||||||| || || |||||||||||||| |||||||| ||||
Sbjct: 509 gagaaatttagaaagatcaggctaaccaatgctacatttcaggagagggttg 560



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 122/149 (81%)
 Strand = Plus / Plus

                                                                       
Query: 121 ggcatagagtttcttgagctgtgcgggttcgagaaaccggaaggtgaagagatcttgttt 180
           ||||||||||| || ||||| ||||| || |||||||  |||||  | |||  |||||||
Sbjct: 575 ggcatagagttcctggagctctgcggatttgagaaacttgaagggaacgagtacttgttt 634

                                                                       
Query: 181 ctggcaagggacaaggttgacaaagccgtcctgaatgtagctggagccgagctcaactcg 240
            |||||||||| || || ||||| ||  |||||||   ||||||||||||||| || || 
Sbjct: 635 ttggcaagggaaaaagtcgacaaggctatcctgaacacagctggagccgagctgaattct 694

                                        
Query: 241 gccatcaccaatcctttcttcggagtcct 269
           |||||||||||||||||||| || |||||
Sbjct: 695 gccatcaccaatcctttctttggggtcct 723
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>gb|AY110441.1| Zea mays CL14665_2 mRNA sequence
          Length = 676

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                              
Query: 219 agctggagccgagctcaactcggccatcaccaatcctttcttcggagtcct 269
           ||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct: 359 agctggagccgagctgaattctgccatcaccaatcctttcttcggagtcct 309
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>gb|AC182658.2| Populus trichocarpa clone Pop1-124E10, complete sequence
          Length = 99811

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 61/74 (82%)
 Strand = Plus / Plus

                                                                         
Query: 129   gtttcttgagctgtgcgggttcgagaaaccggaaggtgaagagatcttgtttctggcaag 188
             ||||||||||||||| ||||| ||||||   ||| | || ||| |||| ||||| || ||
Sbjct: 71047 gtttcttgagctgtgtgggtttgagaaaattgaaagcgacgagttcttttttcttgctag 71106

                           
Query: 189   ggacaaggttgaca 202
             ||||||||| ||||
Sbjct: 71107 ggacaaggtggaca 71120
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>gb|AY628385.1| Mangifera indica clone LMMA13 microsatellite sequence
          Length = 488

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 121 ggcatagagtttcttgagctgtgcgg 146
           |||||||||||| |||||||||||||
Sbjct: 298 ggcatagagtttattgagctgtgcgg 273
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>emb|AL049690.20|HSJ1060K6 Human DNA sequence from clone RP5-1060K6 on chromosome 20p12.1-13
            Contains the RPS11P1 gene for ribosomal protein S11
            pseudogene 1, complete sequence
          Length = 117349

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 89   ctacattccaggagagagttg 109
            |||||||||||||||||||||
Sbjct: 5460 ctacattccaggagagagttg 5480
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>ref|XM_508892.1| PREDICTED: Pan troglodytes similar to formin binding protein 4
           (LOC451706), mRNA
          Length = 477

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 103 agagttgcgagccttggagg 122
           ||||||||||||||||||||
Sbjct: 148 agagttgcgagccttggagg 167
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>ref|NM_015308.1| Homo sapiens formin binding protein 4 (FNBP4), mRNA
          Length = 3995

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 103  agagttgcgagccttggagg 122
            ||||||||||||||||||||
Sbjct: 1269 agagttgcgagccttggagg 1288
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>gb|BC006557.2| Homo sapiens formin binding protein 4, mRNA (cDNA clone
            IMAGE:2823964), partial cds
          Length = 4014

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 103  agagttgcgagccttggagg 122
            ||||||||||||||||||||
Sbjct: 1272 agagttgcgagccttggagg 1291
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>emb|AL137480.1|HSM802205 Homo sapiens mRNA; cDNA DKFZp434M2023 (from clone DKFZp434M2023)
          Length = 4018

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 103  agagttgcgagccttggagg 122
            ||||||||||||||||||||
Sbjct: 1237 agagttgcgagccttggagg 1256
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>gb|BC037404.1| Homo sapiens formin binding protein 4, mRNA (cDNA clone MGC:36749
            IMAGE:5140963), complete cds
          Length = 3995

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 103  agagttgcgagccttggagg 122
            ||||||||||||||||||||
Sbjct: 1269 agagttgcgagccttggagg 1288
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>dbj|AK123898.1| Homo sapiens cDNA FLJ41904 fis, clone PEBLM2005632, moderately
            similar to Mus musculus formin binding protein 4 (Fnbp4)
          Length = 2721

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 103  agagttgcgagccttggagg 122
            ||||||||||||||||||||
Sbjct: 1105 agagttgcgagccttggagg 1124
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>dbj|AK054636.1| Homo sapiens cDNA FLJ30074 fis, clone BGGI11000123, highly similar to
            Mus musculus formin binding protein 30 mRNA
          Length = 2796

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 103  agagttgcgagccttggagg 122
            ||||||||||||||||||||
Sbjct: 1261 agagttgcgagccttggagg 1280
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>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012
          Length = 2668010

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 269     tctaaaaccgagaaattccc 288
               ||||||||||||||||||||
Sbjct: 1721203 tctaaaaccgagaaattccc 1721222
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>gb|AC021443.27| Homo sapiens chromosome 11, clone RP11-692M12, complete sequence
          Length = 220283

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   agagttgcgagccttggagg 122
             ||||||||||||||||||||
Sbjct: 96648 agagttgcgagccttggagg 96629
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>emb|AL359680.4|CNS05TEY Human chromosome 14 DNA sequence BAC R-716B8 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 175009

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 241    gccatcaccaatcctttctt 260
              ||||||||||||||||||||
Sbjct: 139411 gccatcaccaatcctttctt 139392
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>emb|AL672284.15| Mouse DNA sequence from clone RP23-39I7 on chromosome X, complete
              sequence
          Length = 227918

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 365    gtgcaatcttgcttatgaga 384
              ||||||||||||||||||||
Sbjct: 118391 gtgcaatcttgcttatgaga 118410
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>dbj|AB023231.2| Homo sapiens mRNA for KIAA1014 protein, partial cds
          Length = 4145

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 103  agagttgcgagccttggagg 122
            ||||||||||||||||||||
Sbjct: 1437 agagttgcgagccttggagg 1456


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,297,847
Number of Sequences: 3902068
Number of extensions: 3297847
Number of successful extensions: 54840
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54771
Number of HSP's gapped (non-prelim): 61
length of query: 423
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 401
effective length of database: 17,147,199,772
effective search space: 6876027108572
effective search space used: 6876027108572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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