>YMX3_CAEEL (P34511) Hypothetical protein K06H7.3|
          Length = 618

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +1

Query: 76  DACSCSLRAWNQSLV-DRSSCFTCSVPVDFSSSVVNIRKFSSCIY 207
           DA    +  W   L  D   C TC+ PVDF    V +  + S  +
Sbjct: 41  DAGMSLMLEWKMRLSEDSDQCTTCNCPVDFGDRAVLLEHYQSLFH 85

>PGBM_MOUSE (Q05793) Basement membrane-specific heparan sulfate proteoglycan core|
            protein precursor (HSPG) (Perlecan) (PLC)
          Length = 3707

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 127  SSCFTCSVPVDFSSSVVNIRK 189
            SS +TC  P  F+++ VNIRK
Sbjct: 3182 SSSYTCVCPAGFTAAAVNIRK 3202


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,903,772
Number of Sequences: 219361
Number of extensions: 389939
Number of successful extensions: 1138
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 80,573,946
effective HSP length: 48
effective length of database: 70,044,618
effective search space used: 1681070832
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)