>TRME_CAMJE (Q9PNX9) Probable tRNA modification GTPase trmE|
          Length = 442

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
 Frame = +2

Query: 119 LNAKLSFTSSTEAFIESTVAGTLGETLEANSKYGNELVDNHVDKMTRTVEAAKHADLVRK 298
           LNA LS+    E  I S +AGT  +T+E N K G      H+ ++  T    +  D++ +
Sbjct: 231 LNALLSY----ERAIVSDIAGTTRDTIEENFKLG-----THLLRIIDTAGIRESKDVIEQ 281

Query: 299 LEWKLALAEKRIAKAERVLGKVETA-LKPTEDTKPPETITDEERFMF 436
           +   +AL++K +  A+ +L   + + ++  ED K  + + + ++ +F
Sbjct: 282 I--GVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIF 326

>TKB1_STRPU (Q26648) Tektin-B1|
          Length = 400

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 28/92 (30%), Positives = 44/92 (47%)
 Frame = +2

Query: 116 RLNAKLSFTSSTEAFIESTVAGTLGETLEANSKYGNELVDNHVDKMTRTVEAAKHADLVR 295
           R +A++  +      I STVA T  + LEA  +     +   + +M R    AK  D   
Sbjct: 201 RADAEMRSSQRLREAIHSTVAQTDND-LEAQRQATEFALRKRIHEMKR----AKDED--- 252

Query: 296 KLEWKLALAEKRIAKAERVLGKVETALKPTED 391
             EW+    E+ IAK ER + ++E A+K  E+
Sbjct: 253 --EWQKKNTEEEIAKQERNIRELEQAIKDKEN 282

>KCY_METMP (Q6LZK1) Cytidylate kinase (EC 2.7.4.14) (CK) (Cytidine|
           monophosphate kinase) (CMP kinase)
          Length = 178

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 119 LNAKLSFTSSTEAFIESTVAGTLGETLEANSKYG--NELVDNHVDKMTRTVEAAKHADLV 292
           L+ K         FI   +A  +  TL+  S Y   N  VDN +D+  R VEAA+  DL+
Sbjct: 20  LSEKYGLNHVCAGFIFRDMAKEMNMTLQEFSSYAETNTEVDNEIDR--RQVEAAQSGDLI 77

Query: 293 RKLEWKLA 316
             LE +LA
Sbjct: 78  --LEGRLA 83

>RL9_MYCLE (P46385) 50S ribosomal protein L9|
          Length = 152

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
 Frame = +2

Query: 179 GTLGETLEANSKYGNELVDNHVDKMTRTVEAAKHADLVRKLEWKLALAEKRIAKAERV-- 352
           G++G+T+E    YG   +  H   +  +  A + AD +R+     A+ ++  A   +V  
Sbjct: 13  GSVGDTVEVKDGYGRNFLLPHGLAIVASRGAQRQADEIRRARETKAMRDREHANEIKVAI 72

Query: 353 --LGKVETALKPTEDT 394
             LG V   +K   D+
Sbjct: 73  EALGSVSLPMKTVADS 88

>PLEC1_CRIGR (Q9JI55) Plectin-1 (PLTN) (PCN) (300-kDa intermediate|
            filament-associated protein) (IFAP300) (Fragment)
          Length = 4473

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 1/119 (0%)
 Frame = +2

Query: 89   KSLQDEEQARLNAKLSFTSSTEAFIESTVAGTLGETLEANSKYGNELVDNHVDKMTRTVE 268
            KSL  EE+A    K +         +   A  L E  E  S    +L      K  +  E
Sbjct: 1918 KSLAAEEEAARQRKAALEEVERLKAKVEEARRLRERAEQESARQLQLAQEAAQKRLQAEE 1977

Query: 269  AAKHADLVRKLEWKLALA-EKRIAKAERVLGKVETALKPTEDTKPPETITDEERFMFRK 442
             A HA +V++ E +L    ++  +  ER+ G+ E A +  E+ +      + E    RK
Sbjct: 1978 KA-HAFVVQQREEELQQTLQQEQSMLERLRGEAEAARRAAEEAEEAREQAEREAAQSRK 2035

>JHD1_ASHGO (Q75AL5) JmjC domain-containing histone demethylation protein 1 (EC|
           1.14.11.-)
          Length = 486

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 302 LTSLQDQHALQLLQFLSSCPRDYRPVHFHI*S*LQGSLQE 183
           L  +  +HA+ LL +L      Y+P H+H  S +  SL++
Sbjct: 436 LQLITHEHAVALLDYLRDTRLKYKPAHYHTKSTMLASLEK 475

>CCD93_XENTR (Q640U7) Coiled-coil domain-containing protein 93|
          Length = 610

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 19/95 (20%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
 Frame = +2

Query: 89  KSLQDEEQARLNAKLSFTSSTEAFIESTVAGTLGETLEANSKYGNELVDNHVDKMTR--T 262
           + L+ EE+ R+ A ++  ++T        A T+G+ +   SK   ++V  + +K +    
Sbjct: 237 EELRAEEELRIKALMTEMAATGMEEGRLTASTVGQIVGLQSKEIKQMVSEYAEKQSELSA 296

Query: 263 VEAAKHADLVRKLEWKLALAEKRIAKAERVLGKVE 367
            + A++    ++   K+A   K I + +++L +++
Sbjct: 297 EDRAEYLGAAQQHRRKVASLSKLIGQRKKLLDQLQ 331


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,414,060
Number of Sequences: 219361
Number of extensions: 1262301
Number of successful extensions: 3764
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3762
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)