ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal20g07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome... 190 4e-45
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 190 4e-45
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 190 4e-45
4gb|AC148487.14| Medicago truncatula clone mth2-57f20, complete s... 64 5e-07
5ref|XM_472782.1| Oryza sativa (japonica cultivar-group), predic... 56 1e-04
6ref|NM_113207.2| Arabidopsis thaliana unknown protein AT3G23070 ... 50 0.008
7emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromosome 4,... 48 0.032
8dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.032
9dbj|AB026655.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 48 0.032
10emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4,... 48 0.032
11ref|NM_117531.2| Arabidopsis thaliana unknown protein AT4G14510 ... 46 0.13
12ref|NM_111003.3| Arabidopsis thaliana unknown protein AT3G01370 ... 46 0.13
13gb|AC144401.2| Didelphis virginiana clone LBNL3-270H19, complete... 46 0.13
14gb|AC010870.6|ATAC010870 Arabidopsis thaliana chromosome III BAC... 46 0.13
15gb|BT010594.1| Arabidopsis thaliana At3g01370 gene, complete cds 46 0.13
16gb|AY136347.1| Arabidopsis thaliana unknown protein (At3g01370) ... 46 0.13
17emb|BX823961.1|CNS0A5OS Arabidopsis thaliana Full-length cDNA Co... 46 0.13
18dbj|BS000210.2| Pan troglodytes chromosome 22 clone:RP43-018H16,... 44 0.51
19ref|XM_475863.1| Oryza sativa (japonica cultivar-group), predic... 42 2.0
20gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
21gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
22emb|AL929561.5| Human DNA sequence from clone DAQB-117O11 on chr... 42 2.0
23emb|BX248093.4| Human DNA sequence from clone DASS-357K17 on chr... 42 2.0
24emb|AL662852.9| Human DNA sequence from clone XXbac-228J24 on ch... 42 2.0
25emb|AL645937.6| Human DNA sequence from clone XXbac-171B11 on ch... 42 2.0
26emb|AL359547.26| Human DNA sequence from clone RP11-715G15 on ch... 42 2.0
27gb|BC034912.1| Homo sapiens cDNA clone IMAGE:5272441 42 2.0
28emb|CR774181.3| Human DNA sequence from clone DAAP-270H14 on chr... 42 2.0
29emb|BX927132.7| Human DNA sequence from clone DAMA-405I21 on chr... 42 2.0
30emb|CR388415.2| Human DNA sequence from clone DADB-150K7 on chro... 42 2.0
31dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
32emb|AL022727.1|HS80I19 Human DNA sequence from clone RP1-80I19 o... 42 2.0
33gb|AC169385.2| Mus musculus BAC clone RP23-247C1 from chromosome... 40 7.9
34gb|AC113444.9| Mus musculus chromosome 15, clone RP23-268C9, com... 40 7.9
35gb|AC159127.8| Mus musculus chromosome 3, clone RP24-214E8, comp... 40 7.9
36gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome 40 7.9
37gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.9
38emb|CT009638.5| Zebrafish DNA sequence from clone CH73-162A18 in... 40 7.9
39gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 7.9
40gb|AC182644.4| Pan troglodytes BAC clone CH251-64L5 from chromos... 40 7.9
41emb|AL357275.14| Human DNA sequence from clone RP11-534J23 on ch... 40 7.9
42emb|Z97336.1|ATFCA1 Arabidopsis thaliana DNA chromosome 4, ESSA ... 40 7.9
43emb|AL161539.2|ATCHRIV39 Arabidopsis thaliana DNA chromosome 4, ... 40 7.9
44gb|AC157489.18| Medicago truncatula clone mth2-70e3, complete se... 40 7.9
45gb|AC154606.2| Mus musculus BAC clone RP23-252E10 from chromosom... 40 7.9
46gb|AC134241.2| Oryza sativa (japonica cultivar-group) chromosome... 40 7.9
47dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
48gb|AC073905.3| Homo sapiens BAC clone RP11-745H15 from 2, comple... 40 7.9
49emb|BX004870.13| Zebrafish DNA sequence from clone CH211-168H9 i... 40 7.9
50gb|AC131727.4| Mus musculus BAC clone RP23-120E19 from 14, compl... 40 7.9
51gb|AC151833.3| Mus musculus BAC clone RP23-374P15 from 14, compl... 40 7.9
52gb|U59223.1|PHU59223 Plexaura homomalla 8(R)-lipoxygenase mRNA, ... 40 7.9
53emb|AL672286.9| Mouse DNA sequence from clone RP23-48B17 on chro... 40 7.9
54emb|AL844221.6| Mouse DNA sequence from clone RP23-445C3 on chro... 40 7.9 
>gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0074L11, complete sequence
          Length = 180703

 Score =  190 bits (96), Expect = 4e-45
 Identities = 255/307 (83%), Gaps = 1/307 (0%)
 Strand = Plus / Minus

                                                                         
Query: 7     atgactttgtagtcttctaccgagggaaagatttcttgtcccg-gaacttgcagaggcac 65
             |||||||| | ||||||||| |||| || |||||||||||||  ||||| || |||  ||
Sbjct: 23989 atgactttatggtcttctacagaggaaaggatttcttgtccccagaactcgcggagaaac 23930

                                                                         
Query: 66    tcctagagagggaaagatnaatgaagtccctacaagatgaggagcaagcacggttaaatg 125
             | ||||||||||||||||     |||||| ||||||||||||||||||| || |||||||
Sbjct: 23929 tgctagagagggaaagatgggcaaagtccttacaagatgaggagcaagcgcgattaaatg 23870

                                                                         
Query: 126   caaagttgtcatttacttctagcactgaggcatttatagaatccactgtagctggtactc 185
             ||  ||  || ||| |||| || |||||||||  | ||||  | ||||| |||||||| |
Sbjct: 23869 cagcgtcttccttttcttccagaactgaggcacctgtagagcctactgtggctggtaccc 23810

                                                                         
Query: 186   ttggagagacccttgaagctaactctaaatatggaaatgaactggtcgataatcacgtgg 245
             ||||||| || ||||| ||||||||||||||||||||| ||||||  || ||| | | | 
Sbjct: 23809 ttggagaaactcttgaggctaactctaaatatggaaataaactggatgagaattatgaga 23750

                                                                         
Query: 246   acaagatgacaagaactgtagaagctgcaaagcatgctgatcttgtaaggaagttagagt 305
             |||||||||| |||||||||||||||||||  |||||||| |||||||||||| ||||||
Sbjct: 23749 acaagatgactagaactgtagaagctgcaagacatgctgaccttgtaaggaagctagagt 23690

                    
Query: 306   ggaagct 312
             |||||||
Sbjct: 23689 ggaagct 23683



 Score =  176 bits (89), Expect = 5e-41
 Identities = 134/149 (89%)
 Strand = Plus / Minus

                                                                         
Query: 331   gatagcaaaagctgaaagagtgcttggaaaagtcgagactgccttgaagccaactgaaga 390
             ||||| |||||||||||| || ||||||||||| ||||| ||| ||||||||||||||| 
Sbjct: 23287 gatagaaaaagctgaaagggtccttggaaaagttgagacagccctgaagccaactgaagg 23228

                                                                         
Query: 391   taccaaaccacctgaaacaataaccgatgaagagaggttcatgtttcggaaacttggttt 450
             || | |||| |||||||||||||| ||||||||||| ||||||||||||||||||||| |
Sbjct: 23227 tatccaaccgcctgaaacaataacagatgaagagagattcatgtttcggaaacttggtct 23168

                                          
Query: 451   aaggatgaaggcatttttgctccttggta 479
             |||||||||||||||  ||||||||||||
Sbjct: 23167 aaggatgaaggcattcctgctccttggta 23139



 Score =  153 bits (77), Expect = 8e-34
 Identities = 95/101 (94%)
 Strand = Plus / Minus

                                                                         
Query: 482   agaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaatacagggaactg 541
             |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| 
Sbjct: 22904 agaggagtttttgatggcacgattgaaaatatgcacttgcactggaagtacagggaacta 22845

                                                      
Query: 542   gtgaaaatactggtgaaagcaaagtcttttgcagatgtcaa 582
             ||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 22844 gtgaaaatacttgtgaaagcaaagtcttttggagatgtcaa 22804
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  190 bits (96), Expect = 4e-45
 Identities = 255/307 (83%), Gaps = 1/307 (0%)
 Strand = Plus / Minus

                                                                            
Query: 7        atgactttgtagtcttctaccgagggaaagatttcttgtcccg-gaacttgcagaggcac 65
                |||||||| | ||||||||| |||| || |||||||||||||  ||||| || |||  ||
Sbjct: 21671936 atgactttatggtcttctacagaggaaaggatttcttgtccccagaactcgcggagaaac 21671877

                                                                            
Query: 66       tcctagagagggaaagatnaatgaagtccctacaagatgaggagcaagcacggttaaatg 125
                | ||||||||||||||||     |||||| ||||||||||||||||||| || |||||||
Sbjct: 21671876 tgctagagagggaaagatgggcaaagtccttacaagatgaggagcaagcgcgattaaatg 21671817

                                                                            
Query: 126      caaagttgtcatttacttctagcactgaggcatttatagaatccactgtagctggtactc 185
                ||  ||  || ||| |||| || |||||||||  | ||||  | ||||| |||||||| |
Sbjct: 21671816 cagcgtcttccttttcttccagaactgaggcacctgtagagcctactgtggctggtaccc 21671757

                                                                            
Query: 186      ttggagagacccttgaagctaactctaaatatggaaatgaactggtcgataatcacgtgg 245
                ||||||| || ||||| ||||||||||||||||||||| ||||||  || ||| | | | 
Sbjct: 21671756 ttggagaaactcttgaggctaactctaaatatggaaataaactggatgagaattatgaga 21671697

                                                                            
Query: 246      acaagatgacaagaactgtagaagctgcaaagcatgctgatcttgtaaggaagttagagt 305
                |||||||||| |||||||||||||||||||  |||||||| |||||||||||| ||||||
Sbjct: 21671696 acaagatgactagaactgtagaagctgcaagacatgctgaccttgtaaggaagctagagt 21671637

                       
Query: 306      ggaagct 312
                |||||||
Sbjct: 21671636 ggaagct 21671630



 Score =  176 bits (89), Expect = 5e-41
 Identities = 134/149 (89%)
 Strand = Plus / Minus

                                                                            
Query: 331      gatagcaaaagctgaaagagtgcttggaaaagtcgagactgccttgaagccaactgaaga 390
                ||||| |||||||||||| || ||||||||||| ||||| ||| ||||||||||||||| 
Sbjct: 21671234 gatagaaaaagctgaaagggtccttggaaaagttgagacagccctgaagccaactgaagg 21671175

                                                                            
Query: 391      taccaaaccacctgaaacaataaccgatgaagagaggttcatgtttcggaaacttggttt 450
                || | |||| |||||||||||||| ||||||||||| ||||||||||||||||||||| |
Sbjct: 21671174 tatccaaccgcctgaaacaataacagatgaagagagattcatgtttcggaaacttggtct 21671115

                                             
Query: 451      aaggatgaaggcatttttgctccttggta 479
                |||||||||||||||  ||||||||||||
Sbjct: 21671114 aaggatgaaggcattcctgctccttggta 21671086



 Score =  153 bits (77), Expect = 8e-34
 Identities = 95/101 (94%)
 Strand = Plus / Minus

                                                                            
Query: 482      agaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaatacagggaactg 541
                |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| 
Sbjct: 21670851 agaggagtttttgatggcacgattgaaaatatgcacttgcactggaagtacagggaacta 21670792

                                                         
Query: 542      gtgaaaatactggtgaaagcaaagtcttttgcagatgtcaa 582
                ||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 21670791 gtgaaaatacttgtgaaagcaaagtcttttggagatgtcaa 21670751
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  190 bits (96), Expect = 4e-45
 Identities = 255/307 (83%), Gaps = 1/307 (0%)
 Strand = Plus / Minus

                                                                            
Query: 7        atgactttgtagtcttctaccgagggaaagatttcttgtcccg-gaacttgcagaggcac 65
                |||||||| | ||||||||| |||| || |||||||||||||  ||||| || |||  ||
Sbjct: 21982135 atgactttatggtcttctacagaggaaaggatttcttgtccccagaactcgcggagaaac 21982076

                                                                            
Query: 66       tcctagagagggaaagatnaatgaagtccctacaagatgaggagcaagcacggttaaatg 125
                | ||||||||||||||||     |||||| ||||||||||||||||||| || |||||||
Sbjct: 21982075 tgctagagagggaaagatgggcaaagtccttacaagatgaggagcaagcgcgattaaatg 21982016

                                                                            
Query: 126      caaagttgtcatttacttctagcactgaggcatttatagaatccactgtagctggtactc 185
                ||  ||  || ||| |||| || |||||||||  | ||||  | ||||| |||||||| |
Sbjct: 21982015 cagcgtcttccttttcttccagaactgaggcacctgtagagcctactgtggctggtaccc 21981956

                                                                            
Query: 186      ttggagagacccttgaagctaactctaaatatggaaatgaactggtcgataatcacgtgg 245
                ||||||| || ||||| ||||||||||||||||||||| ||||||  || ||| | | | 
Sbjct: 21981955 ttggagaaactcttgaggctaactctaaatatggaaataaactggatgagaattatgaga 21981896

                                                                            
Query: 246      acaagatgacaagaactgtagaagctgcaaagcatgctgatcttgtaaggaagttagagt 305
                |||||||||| |||||||||||||||||||  |||||||| |||||||||||| ||||||
Sbjct: 21981895 acaagatgactagaactgtagaagctgcaagacatgctgaccttgtaaggaagctagagt 21981836

                       
Query: 306      ggaagct 312
                |||||||
Sbjct: 21981835 ggaagct 21981829



 Score =  176 bits (89), Expect = 5e-41
 Identities = 134/149 (89%)
 Strand = Plus / Minus

                                                                            
Query: 331      gatagcaaaagctgaaagagtgcttggaaaagtcgagactgccttgaagccaactgaaga 390
                ||||| |||||||||||| || ||||||||||| ||||| ||| ||||||||||||||| 
Sbjct: 21981433 gatagaaaaagctgaaagggtccttggaaaagttgagacagccctgaagccaactgaagg 21981374

                                                                            
Query: 391      taccaaaccacctgaaacaataaccgatgaagagaggttcatgtttcggaaacttggttt 450
                || | |||| |||||||||||||| ||||||||||| ||||||||||||||||||||| |
Sbjct: 21981373 tatccaaccgcctgaaacaataacagatgaagagagattcatgtttcggaaacttggtct 21981314

                                             
Query: 451      aaggatgaaggcatttttgctccttggta 479
                |||||||||||||||  ||||||||||||
Sbjct: 21981313 aaggatgaaggcattcctgctccttggta 21981285



 Score =  153 bits (77), Expect = 8e-34
 Identities = 95/101 (94%)
 Strand = Plus / Minus

                                                                            
Query: 482      agaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaatacagggaactg 541
                |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| 
Sbjct: 21981050 agaggagtttttgatggcacgattgaaaatatgcacttgcactggaagtacagggaacta 21980991

                                                         
Query: 542      gtgaaaatactggtgaaagcaaagtcttttgcagatgtcaa 582
                ||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 21980990 gtgaaaatacttgtgaaagcaaagtcttttggagatgtcaa 21980950
to top
>gb|AC148487.14| Medicago truncatula clone mth2-57f20, complete sequence
          Length = 119671

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                         
Query: 476   ggtagaagaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaatacagg 535
             |||||| | ||||||||||| || || ||||| || ||||||||||||||||| ||| ||
Sbjct: 97315 ggtagacgtggagtttttgacggtactatcgagaacatgcacttgcactggaagtaccgg 97256

                     
Query: 536   gaactggt 543
             ||||||||
Sbjct: 97255 gaactggt 97248



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 401   cctgaaacaataaccgatgaagagaggttcatgtttcg 438
             |||||||  ||||||||||||||||| || ||||||||
Sbjct: 97583 cctgaaagtataaccgatgaagagagatttatgtttcg 97546
to top
>ref|XM_472782.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3039

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 103/128 (80%)
 Strand = Plus / Plus

                                                                        
Query: 422  gagaggttcatgtttcggaaacttggtttaaggatgaaggcatttttgctccttggtaga 481
            ||||||| ||||||  ||||| ||||||||| ||||||  |||| ||  | || || || 
Sbjct: 1750 gagaggtacatgttgaggaaagttggtttaaagatgaaatcattcttattgctaggaagg 1809

                                                                        
Query: 482  agaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaatacagggaactg 541
            ||||||||||||||||| ||  | |||||||||||| | |||||||| ||| | ||||| 
Sbjct: 1810 agaggagtttttgatggaactgttgaaaatatgcaccttcactggaagtaccgagaactt 1869

                    
Query: 542  gtgaaaat 549
            || |||||
Sbjct: 1870 gtcaaaat 1877
to top
>ref|NM_113207.2| Arabidopsis thaliana unknown protein AT3G23070 mRNA, complete cds
          Length = 3478

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 100/125 (80%)
 Strand = Plus / Plus

                                                                        
Query: 410  ataaccgatgaagagaggttcatgtttcggaaacttggtttaaggatgaaggcatttttg 469
            ||||| ||||||||||| || ||||| || || ||||| || |  ||||| || || || 
Sbjct: 1991 ataactgatgaagagagatttatgttccgcaagcttggcttgaaaatgaaagctttctta 2050

                                                                        
Query: 470  ctccttggtagaagaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaa 529
            || || |||||  ||||||| |||||||| ||| | || || ||||||||||| ||||||
Sbjct: 2051 cttctaggtaggcgaggagtgtttgatggtacagtggagaacatgcacttgcattggaaa 2110

                 
Query: 530  tacag 534
            |||||
Sbjct: 2111 tacag 2115
to top
>emb|AL663017.3|OSJN00149 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060P14,
             complete sequence
          Length = 139418

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                         
Query: 482   agaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaatacagggaactg 541
             ||||||||||||||||| ||  | |||||||||||| | |||||||| ||| | ||||| 
Sbjct: 79071 agaggagtttttgatggaactgttgaaaatatgcaccttcactggaagtaccgagaactt 79012

                     
Query: 542   gtgaaaat 549
             || |||||
Sbjct: 79011 gtcaaaat 79004
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                            
Query: 482      agaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaatacagggaactg 541
                ||||||||||||||||| ||  | |||||||||||| | |||||||| ||| | ||||| 
Sbjct: 23188879 agaggagtttttgatggaactgttgaaaatatgcaccttcactggaagtaccgagaactt 23188820

                        
Query: 542      gtgaaaat 549
                || |||||
Sbjct: 23188819 gtcaaaat 23188812
to top
>dbj|AB026655.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MXC7
          Length = 79284

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                 
Query: 483   gaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaatacag 534
             ||||||| |||||||| ||| | || || ||||||||||| |||||||||||
Sbjct: 46890 gaggagtgtttgatggtacagtggagaacatgcacttgcattggaaatacag 46941
to top
>emb|AL606653.3|OSJN00104 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0048E02,
             complete sequence
          Length = 121337

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                         
Query: 482   agaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaatacagggaactg 541
             ||||||||||||||||| ||  | |||||||||||| | |||||||| ||| | ||||| 
Sbjct: 27032 agaggagtttttgatggaactgttgaaaatatgcaccttcactggaagtaccgagaactt 26973

                     
Query: 542   gtgaaaat 549
             || |||||
Sbjct: 26972 gtcaaaat 26965
to top
>ref|NM_117531.2| Arabidopsis thaliana unknown protein AT4G14510 mRNA, complete cds
          Length = 3015

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                       
Query: 473  cttggtagaagaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaata 531
            |||||| ||||||| || |||||||| ||  | || || ||||||||||||||||||||
Sbjct: 2233 cttggtcgaagaggggtgtttgatgggactgtagagaacatgcacttgcactggaaata 2291
to top
>ref|NM_111003.3| Arabidopsis thaliana unknown protein AT3G01370 mRNA, complete cds
          Length = 3273

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                        
Query: 476  ggtagaagaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaatacagg 535
            ||||||||||| || |||||||| ||||| || || |||||  | |||||||| || |||
Sbjct: 1823 ggtagaagaggcgtctttgatggaacaatagagaacatgcatcttcactggaagtatagg 1882

                       
Query: 536  gaactggtgaa 546
            ||||| |||||
Sbjct: 1883 gaacttgtgaa 1893
to top
>gb|AC144401.2| Didelphis virginiana clone LBNL3-270H19, complete sequence
          Length = 180378

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 336    caaaagctgaaagagtgcttgga 358
              |||||||||||||||||||||||
Sbjct: 100498 caaaagctgaaagagtgcttgga 100520
to top
>gb|AC010870.6|ATAC010870 Arabidopsis thaliana chromosome III BAC T13O15 genomic sequence,
             complete sequence
          Length = 86324

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                         
Query: 476   ggtagaagaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaatacagg 535
             ||||||||||| || |||||||| ||||| || || |||||  | |||||||| || |||
Sbjct: 44273 ggtagaagaggcgtctttgatggaacaatagagaacatgcatcttcactggaagtatagg 44332

                        
Query: 536   gaactggtgaa 546
             ||||| |||||
Sbjct: 44333 gaacttgtgaa 44343
to top
>gb|BT010594.1| Arabidopsis thaliana At3g01370 gene, complete cds
          Length = 3036

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                        
Query: 476  ggtagaagaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaatacagg 535
            ||||||||||| || |||||||| ||||| || || |||||  | |||||||| || |||
Sbjct: 1801 ggtagaagaggcgtctttgatggaacaatagagaacatgcatcttcactggaagtatagg 1860

                       
Query: 536  gaactggtgaa 546
            ||||| |||||
Sbjct: 1861 gaacttgtgaa 1871
to top
>gb|AY136347.1| Arabidopsis thaliana unknown protein (At3g01370) mRNA, complete cds
          Length = 3126

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                        
Query: 476  ggtagaagaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaatacagg 535
            ||||||||||| || |||||||| ||||| || || |||||  | |||||||| || |||
Sbjct: 1823 ggtagaagaggcgtctttgatggaacaatagagaacatgcatcttcactggaagtatagg 1882

                       
Query: 536  gaactggtgaa 546
            ||||| |||||
Sbjct: 1883 gaacttgtgaa 1893
to top
>emb|BX823961.1|CNS0A5OS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH10ZF05 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1851

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                       
Query: 476 ggtagaagaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaatacagg 535
           ||||||||||| || |||||||| ||||| || || |||||  | |||||||| || |||
Sbjct: 571 ggtagaagaggcgtctttgatggaacaatagagaacatgcatcttcactggaagtatagg 630

                      
Query: 536 gaactggtgaa 546
           ||||| |||||
Sbjct: 631 gaacttgtgaa 641
to top
>dbj|BS000210.2| Pan troglodytes chromosome 22 clone:RP43-018H16, map 22, complete
             sequences
          Length = 148120

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 234   ataatcacgtggacaagatgac 255
             ||||||||||||||||||||||
Sbjct: 84897 ataatcacgtggacaagatgac 84918
to top
>ref|XM_475863.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2397

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 506  gaaaatatgcacttgcactggaaatacagggaa 538
            ||||||||||||||||| |||||  ||||||||
Sbjct: 1888 gaaaatatgcacttgcattggaagcacagggaa 1920
to top
>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0079H23, complete sequence
          Length = 191765

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 506   gaaaatatgcacttgcactggaaatacagggaa 538
             ||||||||||||||||| |||||  ||||||||
Sbjct: 97462 gaaaatatgcacttgcattggaagcacagggaa 97430
to top
>gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560C03,
              complete sequence
          Length = 177861

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 506    gaaaatatgcacttgcactggaaatacagggaa 538
              ||||||||||||||||| |||||  ||||||||
Sbjct: 153890 gaaaatatgcacttgcattggaagcacagggaa 153858
to top
>emb|AL929561.5| Human DNA sequence from clone DAQB-117O11 on chromosome 6 Contains the
              KRT18P1 pseudogene 1 for keratin 18, the HCG15 gene for the
              novel transcript HLA complex group 15, the HCG16 gene for
              the novel transcript HLA complex group 16, the ZNF311 gene
              for zinc finger protein 311, the OR2AD1P pseudogene for the
              olfactory receptor, family 2, subfamily AD, member 1, the
              OR2W1 gene for olfactory receptor, family 2, subfamily W,
              member 1, the OR2P1P pseudogene for olfactory receptor,
              family 2, subfamily P, member 1, the SARAP pseudogene for
              SAR1a gene homolog (S. cerevisiae), the OR2B3 gene for
              olfactory receptor, family 2, subfamily B, member 3, the
              OR2J1P pseudogene for olfactory receptor, family 2,
              subfamily J, member 1, the OR2J3 gene for olfactory
              receptor, family 2, subfamily J, member 3, the OR2N1P
              pseudogene for olfactory receptor, family 2, subfamily N,
              member 1 and 2 CpG islands, complete sequence
          Length = 181111

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 317    cttgcagagaaaaggatagcaaaag 341
              |||| ||||||||||||||||||||
Sbjct: 165701 cttgaagagaaaaggatagcaaaag 165725
to top
>emb|BX248093.4| Human DNA sequence from clone DASS-357K17 on chromosome 6, complete
             sequence
          Length = 111633

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 317   cttgcagagaaaaggatagcaaaag 341
             |||| ||||||||||||||||||||
Sbjct: 43537 cttgaagagaaaaggatagcaaaag 43561
to top
>emb|AL662852.9| Human DNA sequence from clone XXbac-228J24 on chromosome 6 contains the
             OR2P1P, OR2J1P, OR2N1P, OR2J4P pseudogenes for olfactory
             receptor, family 2, subfamily P, member 1, subfamily J,
             member 1, subfamily N, member 1, subfamily J, member 4,
             the OR2B3, OR2J3, OR2J2 gene for olfactory receptor,
             family 2, subfamily B, member 3, subfamily J, member 3,
             subfamily J member 2, a GTp-binding protein pseudogene and
             two CpG islands, complete sequence
          Length = 142562

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 317   cttgcagagaaaaggatagcaaaag 341
             |||| ||||||||||||||||||||
Sbjct: 67697 cttgaagagaaaaggatagcaaaag 67721
to top
>emb|AL645937.6| Human DNA sequence from clone XXbac-171B11 on chromosome 6 contains the
             OR2J3 and OR2J2 genes for olfactory receptor, family 2,
             subfamily J, members 2 and 3, the OR2J1P, OR2N1P, OR2J4P,
             OR2H4P and OR2G1P pseudogenes for olfactory receptor,
             family 2, subfamily J, members 1 and 4, subfamily G,
             member 1, subfamily H, member 4 and subfamily N, member 1
             and two CpG islands, complete sequence
          Length = 147667

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 317   cttgcagagaaaaggatagcaaaag 341
             |||| ||||||||||||||||||||
Sbjct: 31047 cttgaagagaaaaggatagcaaaag 31071
to top
>emb|AL359547.26| Human DNA sequence from clone RP11-715G15 on chromosome 6 Contains a
             novel gene and the 5' end of the C6orf103 gene for
             chromosome 6 open reading frame 103, complete sequence
          Length = 129245

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 474   ttggtagaagaggagtttttg 494
             |||||||||||||||||||||
Sbjct: 23936 ttggtagaagaggagtttttg 23956
to top
>gb|BC034912.1| Homo sapiens cDNA clone IMAGE:5272441
          Length = 2202

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 474  ttggtagaagaggagtttttg 494
            |||||||||||||||||||||
Sbjct: 1071 ttggtagaagaggagtttttg 1051
to top
>emb|CR774181.3| Human DNA sequence from clone DAAP-270H14 on chromosome 6, complete
            sequence
          Length = 52780

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 317  cttgcagagaaaaggatagcaaaag 341
            |||| ||||||||||||||||||||
Sbjct: 4198 cttgaagagaaaaggatagcaaaag 4222
to top
>emb|BX927132.7| Human DNA sequence from clone DAMA-405I21 on chromosome 6, complete
             sequence
          Length = 93511

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 317   cttgcagagaaaaggatagcaaaag 341
             |||| ||||||||||||||||||||
Sbjct: 10736 cttgaagagaaaaggatagcaaaag 10760
to top
>emb|CR388415.2| Human DNA sequence from clone DADB-150K7 on chromosome 6, complete
             sequence
          Length = 102196

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 317   cttgcagagaaaaggatagcaaaag 341
             |||| ||||||||||||||||||||
Sbjct: 37675 cttgaagagaaaaggatagcaaaag 37699
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 506      gaaaatatgcacttgcactggaaatacagggaa 538
                ||||||||||||||||| |||||  ||||||||
Sbjct: 27222494 gaaaatatgcacttgcattggaagcacagggaa 27222462
to top
>emb|AL022727.1|HS80I19 Human DNA sequence from clone RP1-80I19 on chromosome 6p21.31-22.2
             Contains OR2B3, OR2J3 and OR2J2 genes for olfactory
             receptors 2B3, 2J3 and 2J2 and olfactory receptor 2J1,
             2N1, 2J4, and 2H4 pseudogenes OR2J1P, OR2N1P, OR2J4P and
             OR2H4P. Contains STSs, GSSs and two CpG islands, complete
             sequence
          Length = 144868

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 317   cttgcagagaaaaggatagcaaaag 341
             |||| ||||||||||||||||||||
Sbjct: 50101 cttgaagagaaaaggatagcaaaag 50125
to top
>gb|AC169385.2| Mus musculus BAC clone RP23-247C1 from chromosome 16, complete sequence
          Length = 206814

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 561    caaagtcttttgcagatgtc 580
              ||||||||||||||||||||
Sbjct: 155565 caaagtcttttgcagatgtc 155584
to top
>gb|AC113444.9| Mus musculus chromosome 15, clone RP23-268C9, complete sequence
          Length = 189539

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 300   tagagtggaagcttgcacttgcag 323
             ||||||||| ||||||||||||||
Sbjct: 92745 tagagtggatgcttgcacttgcag 92768
to top
>gb|AC159127.8| Mus musculus chromosome 3, clone RP24-214E8, complete sequence
          Length = 195609

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   ctcttggagagacccttgaa 202
             ||||||||||||||||||||
Sbjct: 90004 ctcttggagagacccttgaa 89985
to top
>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome
          Length = 3481691

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 202     agctaactctaaatatggaa 221
               ||||||||||||||||||||
Sbjct: 2091142 agctaactctaaatatggaa 2091161
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 205     taactctaaatatggaaatg 224
               ||||||||||||||||||||
Sbjct: 5905563 taactctaaatatggaaatg 5905582
to top
>emb|CT009638.5| Zebrafish DNA sequence from clone CH73-162A18 in linkage group 6,
             complete sequence
          Length = 101890

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 531   acagggaactggtgaaaata 550
             ||||||||||||||||||||
Sbjct: 41486 acagggaactggtgaaaata 41505
to top
>gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNAa0021B21, from chromosome 3, complete sequence
          Length = 139208

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 205    taactctaaatatggaaatg 224
              ||||||||||||||||||||
Sbjct: 134393 taactctaaatatggaaatg 134412
to top
>gb|AC182644.4| Pan troglodytes BAC clone CH251-64L5 from chromosome 4, complete
            sequence
          Length = 157801

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 254  acaagaactgtagaagctgcaaag 277
            |||||||||||| |||||||||||
Sbjct: 7741 acaagaactgtaaaagctgcaaag 7718
to top
>emb|AL357275.14| Human DNA sequence from clone RP11-534J23 on chromosome 13, complete
             sequence
          Length = 68209

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 202   agctaactctaaatatggaaatga 225
             |||||||||||| |||||||||||
Sbjct: 11334 agctaactctaactatggaaatga 11311
to top
>emb|Z97336.1|ATFCA1 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 1
          Length = 206606

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 512   atgcacttgcactggaaata 531
             ||||||||||||||||||||
Sbjct: 96392 atgcacttgcactggaaata 96373
to top
>emb|AL161539.2|ATCHRIV39 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 39
          Length = 197976

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 512   atgcacttgcactggaaata 531
             ||||||||||||||||||||
Sbjct: 41888 atgcacttgcactggaaata 41869
to top
>gb|AC157489.18| Medicago truncatula clone mth2-70e3, complete sequence
          Length = 154580

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                          
Query: 483    gaggagtttttgatggcacaatcgaaaatatgcacttgcactggaaatacagggaactgg 542
              |||| ||||||||||| ||| | |||||||||||  | || ||||||||  ||||||| |
Sbjct: 138798 gaggggtttttgatgggacagtggaaaatatgcatcttcattggaaatatcgggaacttg 138857

                  
Query: 543    tgaa 546
              ||||
Sbjct: 138858 tgaa 138861
to top
>gb|AC154606.2| Mus musculus BAC clone RP23-252E10 from chromosome 16, complete
             sequence
          Length = 181697

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 561   caaagtcttttgcagatgtc 580
             ||||||||||||||||||||
Sbjct: 56423 caaagtcttttgcagatgtc 56442
to top
>gb|AC134241.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0085F02, complete sequence
          Length = 128535

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   taactctaaatatggaaatg 224
             ||||||||||||||||||||
Sbjct: 55185 taactctaaatatggaaatg 55204
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 205     taactctaaatatggaaatg 224
               ||||||||||||||||||||
Sbjct: 5904776 taactctaaatatggaaatg 5904795
to top
>gb|AC073905.3| Homo sapiens BAC clone RP11-745H15 from 2, complete sequence
          Length = 111560

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 333   tagcaaaagctgaaagagtgcttggaaa 360
             |||| ||||||||||||| |||||||||
Sbjct: 89938 tagctaaagctgaaagagggcttggaaa 89965
to top
>emb|BX004870.13| Zebrafish DNA sequence from clone CH211-168H9 in linkage group 5,
              complete sequence
          Length = 153127

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 119    ttaaatgcaaagttgtcatt 138
              ||||||||||||||||||||
Sbjct: 128276 ttaaatgcaaagttgtcatt 128295
to top
>gb|AC131727.4| Mus musculus BAC clone RP23-120E19 from 14, complete sequence
          Length = 208338

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   ttgaagctaactctaaatat 217
             ||||||||||||||||||||
Sbjct: 41913 ttgaagctaactctaaatat 41894
to top
>gb|AC151833.3| Mus musculus BAC clone RP23-374P15 from 14, complete sequence
          Length = 197918

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 198    ttgaagctaactctaaatat 217
              ||||||||||||||||||||
Sbjct: 120307 ttgaagctaactctaaatat 120288
to top
>gb|U59223.1|PHU59223 Plexaura homomalla 8(R)-lipoxygenase mRNA, complete cds
          Length = 2401

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 537  aactggtgaaaatactggtg 556
            ||||||||||||||||||||
Sbjct: 1202 aactggtgaaaatactggtg 1183
to top
>emb|AL672286.9| Mouse DNA sequence from clone RP23-48B17 on chromosome X, complete
             sequence
          Length = 209697

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 371   gccttgaagccaactgaagatacc 394
             |||||||| |||||||||||||||
Sbjct: 75279 gccttgaaaccaactgaagatacc 75256
to top
>emb|AL844221.6| Mouse DNA sequence from clone RP23-445C3 on chromosome X, complete
             sequence
          Length = 188627

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 448   tttaaggatgaaggcatttt 467
             ||||||||||||||||||||
Sbjct: 17026 tttaaggatgaaggcatttt 17045


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,569,400
Number of Sequences: 3902068
Number of extensions: 5569400
Number of successful extensions: 102222
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101899
Number of HSP's gapped (non-prelim): 310
length of query: 582
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 559
effective length of database: 17,143,297,704
effective search space: 9583103416536
effective search space used: 9583103416536
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top