ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal20f19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 0.81
2dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.81
3gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.81
4dbj|AB072455.1| Coprinopsis cinerea mRNA for DNA ligase IV, comp... 42 0.81
5dbj|AB098474.1| Coprinopsis cinerea mRNA for DNA ligase IV, comp... 42 0.81
6dbj|AK109510.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.81
7dbj|AK063486.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.81
8gb|AC161800.8| Mus musculus chromosome 7, clone RP23-340E19, com... 40 3.2
9emb|BX005436.12| Zebrafish DNA sequence from clone DKEY-9A8 in l... 40 3.2
10emb|BX005430.14| Zebrafish DNA sequence from clone DKEY-19E4 in ... 40 3.2
11gb|AC068496.7| Mus musculus chromosome 3 clone RP23-75F13 clone ... 40 3.2
12gb|AC010387.5| Homo sapiens chromosome 5 clone CTD-2074D8, compl... 40 3.2
13gb|AC158937.4| Mus musculus chromosome 3, clone RP23-290L18, com... 40 3.2
14gb|AC102003.5| Mus musculus chromosome 7, clone RP24-488I10, com... 40 3.2
15gb|AC073883.34| Mus musculus strain C57BL/6J chromosome 3 clone ... 40 3.2 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 4        tttatgggaaagaagcaaagcttat 28
                ||||||||||||||||||| |||||
Sbjct: 12100744 tttatgggaaagaagcaaatcttat 12100768



 Score = 40.1 bits (20), Expect = 3.2
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                    
Query: 81       tttctggaggaatgtcatcctctttacctattctgccaaattctctgaaaga 132
                |||||||||  ||||||||||| || |||||||| || || ||| |||||||
Sbjct: 12100828 tttctggagagatgtcatcctccttgcctattctaccgaaatctttgaaaga 12100879
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 4        tttatgggaaagaagcaaagcttat 28
                ||||||||||||||||||| |||||
Sbjct: 12097507 tttatgggaaagaagcaaatcttat 12097531



 Score = 40.1 bits (20), Expect = 3.2
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                    
Query: 81       tttctggaggaatgtcatcctctttacctattctgccaaattctctgaaaga 132
                |||||||||  ||||||||||| || |||||||| || || ||| |||||||
Sbjct: 12097591 tttctggagagatgtcatcctccttgcctattctaccgaaatctttgaaaga 12097642
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>gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0052J20,
              complete sequence
          Length = 144969

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 4      tttatgggaaagaagcaaagcttat 28
              ||||||||||||||||||| |||||
Sbjct: 121324 tttatgggaaagaagcaaatcttat 121348



 Score = 40.1 bits (20), Expect = 3.2
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                  
Query: 81     tttctggaggaatgtcatcctctttacctattctgccaaattctctgaaaga 132
              |||||||||  ||||||||||| || |||||||| || || ||| |||||||
Sbjct: 121408 tttctggagagatgtcatcctccttgcctattctaccgaaatctttgaaaga 121459
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>dbj|AB072455.1| Coprinopsis cinerea mRNA for DNA ligase IV, complete cds
          Length = 3221

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 122  tctctgaaagaaaccttccat 142
            |||||||||||||||||||||
Sbjct: 1118 tctctgaaagaaaccttccat 1138
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>dbj|AB098474.1| Coprinopsis cinerea mRNA for DNA ligase IV, complete cds
          Length = 3221

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 122  tctctgaaagaaaccttccat 142
            |||||||||||||||||||||
Sbjct: 1118 tctctgaaagaaaccttccat 1138
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>dbj|AK109510.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-D09, full
           insert sequence
          Length = 1750

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 4   tttatgggaaagaagcaaagcttat 28
           ||||||||||||||||||| |||||
Sbjct: 235 tttatgggaaagaagcaaatcttat 259



 Score = 40.1 bits (20), Expect = 3.2
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 81  tttctggaggaatgtcatcctctttacctattctgccaaattctctgaaaga 132
           |||||||||  ||||||||||| || |||||||| || || ||| |||||||
Sbjct: 319 tttctggagagatgtcatcctccttgcctattctaccgaaatctttgaaaga 370
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>dbj|AK063486.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-C05, full
           insert sequence
          Length = 2003

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 4   tttatgggaaagaagcaaagcttat 28
           ||||||||||||||||||| |||||
Sbjct: 257 tttatgggaaagaagcaaatcttat 281



 Score = 40.1 bits (20), Expect = 3.2
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                               
Query: 81  tttctggaggaatgtcatcctctttacctattctgccaaattctctgaaaga 132
           |||||||||  ||||||||||| || |||||||| || || ||| |||||||
Sbjct: 341 tttctggagagatgtcatcctccttgcctattctaccgaaatctttgaaaga 392
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>gb|AC161800.8| Mus musculus chromosome 7, clone RP23-340E19, complete sequence
          Length = 201173

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    cagcagggtttctggaggaa 92
             ||||||||||||||||||||
Sbjct: 85442 cagcagggtttctggaggaa 85423
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>emb|BX005436.12| Zebrafish DNA sequence from clone DKEY-9A8 in linkage group 6, complete
              sequence
          Length = 168549

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 113    ctgccaaattctctgaaaga 132
              ||||||||||||||||||||
Sbjct: 146437 ctgccaaattctctgaaaga 146456
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>emb|BX005430.14| Zebrafish DNA sequence from clone DKEY-19E4 in linkage group 6,
             complete sequence
          Length = 209866

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   gccaaattctctgaaagaaa 134
             ||||||||||||||||||||
Sbjct: 13883 gccaaattctctgaaagaaa 13864
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>gb|AC068496.7| Mus musculus chromosome 3 clone RP23-75F13 clone RP23-75F13, complete
             sequence
          Length = 136268

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    tgagacagtgtcacaacagc 76
             ||||||||||||||||||||
Sbjct: 14919 tgagacagtgtcacaacagc 14938
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>gb|AC010387.5| Homo sapiens chromosome 5 clone CTD-2074D8, complete sequence
          Length = 173414

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 201   ccttatatcagagtgcattt 220
             ||||||||||||||||||||
Sbjct: 57312 ccttatatcagagtgcattt 57331
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>gb|AC158937.4| Mus musculus chromosome 3, clone RP23-290L18, complete sequence
          Length = 196087

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 57     tgagacagtgtcacaacagc 76
              ||||||||||||||||||||
Sbjct: 155479 tgagacagtgtcacaacagc 155460
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>gb|AC102003.5| Mus musculus chromosome 7, clone RP24-488I10, complete sequence
          Length = 150428

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    cagcagggtttctggaggaa 92
             ||||||||||||||||||||
Sbjct: 42025 cagcagggtttctggaggaa 42044
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>gb|AC073883.34| Mus musculus strain C57BL/6J chromosome 3 clone rp23-71e13, complete
             sequence
          Length = 213482

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    tgagacagtgtcacaacagc 76
             ||||||||||||||||||||
Sbjct: 89411 tgagacagtgtcacaacagc 89430


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,241,293
Number of Sequences: 3902068
Number of extensions: 2241293
Number of successful extensions: 40409
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40353
Number of HSP's gapped (non-prelim): 56
length of query: 247
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 225
effective length of database: 17,147,199,772
effective search space: 3858119948700
effective search space used: 3858119948700
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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