ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal20d08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ECA3_ARATH (Q9SY55) Calcium-transporting ATPase 3, endoplasmic r... 28 5.4
2SDK1_CHICK (Q8AV58) Protein sidekick-1 precursor 28 7.0
3SPEA_GLOVI (Q7NE10) Biosynthetic arginine decarboxylase (EC 4.1.... 28 7.0
4KR103_HUMAN (P60369) Keratin-associated protein 10-3 (Keratin-as... 28 7.0

>ECA3_ARATH (Q9SY55) Calcium-transporting ATPase 3, endoplasmic reticulum-type|
           (EC 3.6.3.8)
          Length = 998

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 290 TRDRGRSDILCTHHQLSFRFSHG 222
           TRDR    +LC+H Q+   FS G
Sbjct: 490 TRDRKMMSVLCSHKQMDVMFSKG 512



to top

>SDK1_CHICK (Q8AV58) Protein sidekick-1 precursor|
          Length = 2169

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 357  ELSSQSHSDSRANLKLSHWLQGNTGSRPIRY 265
            +L++     S  +L+L HW+ G+ GS PIRY
Sbjct: 1434 QLTTPQSDVSSRSLQL-HWVPGSDGSSPIRY 1463



to top

>SPEA_GLOVI (Q7NE10) Biosynthetic arginine decarboxylase (EC 4.1.1.19) (ADC)|
          Length = 644

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/61 (19%), Positives = 28/61 (45%)
 Frame = -1

Query: 366 NTYELSSQSHSDSRANLKLSHWLQGNTGSRPIRYPMHTSSAILQVFARQQHNRRRQTHVQ 187
           NT  +   S      + +L H ++G+T +  ++Y  +   A+L+   R+     R+  + 
Sbjct: 553 NTVHIHLASDEPGEQSYRLEHVVKGDTMTEVLKYVQYDHEAMLESIRRETEQALRERRIT 612

Query: 186 I 184
           +
Sbjct: 613 L 613



to top

>KR103_HUMAN (P60369) Keratin-associated protein 10-3 (Keratin-associated|
           protein 10.3) (High sulfur keratin-associated protein
           10.3) (Keratin-associated protein 18-3)
           (Keratin-associated protein 18.3)
          Length = 221

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +3

Query: 162 TSNPCQ*KSVRAFVYVCCVVAVRKPEG*LMMCA*DIGSASIPCSPVTSG*AS 317
           TS+PCQ          CCV    KP   + +C   +    I C PV SG +S
Sbjct: 91  TSSPCQ--------QACCVPVCCKPVCCVPVCCKPVCCKPICCVPVCSGASS 134


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,353,340
Number of Sequences: 219361
Number of extensions: 699808
Number of successful extensions: 1474
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1474
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top