ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal20c17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SRS1_ORYSA (P83649) Salt-stress root protein RS1 52 5e-07

>SRS1_ORYSA (P83649) Salt-stress root protein RS1|
          Length = 204

 Score = 52.0 bits (123), Expect = 5e-07
 Identities = 27/44 (61%), Positives = 28/44 (63%)
 Frame = +1

Query: 1   LPGLSKFFDKDGKXAXAAEFLKSFNXXXXXXXXXXXXTELEPKV 132
           L GL+K FDKDGK A AAEFLKSFN            TELEPKV
Sbjct: 10  LTGLNKLFDKDGKKAAAAEFLKSFNKEEIGKEIDDKKTELEPKV 53


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.137    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,847,906
Number of Sequences: 219361
Number of extensions: 41766
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 80,573,946
effective HSP length: 20
effective length of database: 76,186,726
effective search space used: 1828481424
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
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