ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal20c14 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X51608.1|TAPRKGEN Triticum aestivum RNA for phosphoribulokinase Length = 1533 Score = 1068 bits (539), Expect = 0.0 Identities = 575/587 (97%) Strand = Plus / Plus Query: 13 agaggttgggcagcaaacatggcattctgcagcccacacaccaccacatccctgcgctcc 72 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 47 agaggttgggcagcaaacatggcattctgcagcccacacaccaccacatccctgcgctcc 106 Query: 73 ccatgcaccaccatcccaaactcaggcttcaggcagaaccaagtcatcctcttcacaacc 132 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct: 107 ccatgcaccaccatcccaaactcaggcttcaggcagaaccaagtcatcttcttcacgacc 166 Query: 133 agaagcagcaggaggagtaccacgaggcatggagcaaggaccttccaggtctcatgcgca 192 ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| Sbjct: 167 agaagcagcaggaggagtaacacgaggcatggggcaaggaccttccaggtctcatgcgca 226 Query: 193 gttgagaagccaatagtgattggcctggcagcagactcgggatgtgggaaatccaccttc 252 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 227 gttgagcagccaatagtgattggcctggcagcagactcgggatgtgggaaatccaccttc 286 Query: 253 atgcgccggctcaccagcgtgtttggaggtgctgcagagccacccaagggcggcaaccca 312 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 287 atgcgccggctcaccagcgtgtttggaggtgccgcagagccacccaagggcggcaaccca 346 Query: 313 gactcgaacacgctcatcagcgacacgacgacggtcatatgccttgatgactaccattcc 372 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 347 gactccaacacgctcatcagcgacacgacgacggtcatatgccttgatgactaccattcc 406 Query: 373 ttggacagaaccgggaggaaggagaaaggtgtgactgccctggaccccaaggcaaacgac 432 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 407 ttggacagaaccgggaggaaggagaaaggtgtgaccgccctggaccccaaggcaaacgac 466 Query: 433 tttgatctcatgtatgagcaagtgaaggcaatcaaagaaggcaaggctattgagaagcca 492 |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct: 467 tttgatctcatgtatgagcaggtgaaggcaatcaaggaaggcaaggctattgagaagcca 526 Query: 493 atctacaaccacgtcactggcctcctcgacccggcggagctcatccagccccccaagatc 552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 527 atctacaaccacgtcactggcctcctcgacccggcggagctcatccagccccccaagatc 586 Query: 553 ttcgtcatcgagggtttgcacccaatgtatgacgaacgtgtgagaga 599 ||||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 587 ttcgtcatcgagggtttgcacccaatgtacgatgaacgtgtgagaga 633
>emb|X57952.1|TAPRK T.aestivum PRK gene for ribulose-5-phosphate kinase Length = 2501 Score = 1039 bits (524), Expect = 0.0 Identities = 557/568 (98%) Strand = Plus / Plus Query: 13 agaggttgggcagcaaacatggcattctgcagcccacacaccaccacatccctgcgctcc 72 |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 206 agaggtcgggcagcaaacatggcattctgcagcccacacagcaccacatccctgcgctcc 265 Query: 73 ccatgcaccaccatcccaaactcaggcttcaggcagaaccaagtcatcctcttcacaacc 132 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct: 266 ccatgcaccaccatcccaaactctggcttcaggcagaaccaagtcatcctcttcacgacc 325 Query: 133 agaagcagcaggaggagtaccacgaggcatggagcaaggaccttccaggtctcatgcgca 192 ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| Sbjct: 326 agaagcagcaggaggagtaacacgaggcatggggcaaggaccttccaggtctcatgcgca 385 Query: 193 gttgagaagccaatagtgattggcctggcagcagactcgggatgtgggaaatccaccttc 252 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 386 gttgagcagccaatagtgattggcctggcagcagactcgggatgtgggaaatccaccttc 445 Query: 253 atgcgccggctcaccagcgtgtttggaggtgctgcagagccacccaagggcggcaaccca 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 446 atgcgccggctcaccagcgtgtttggaggtgctgcagagccacccaagggcggcaaccca 505 Query: 313 gactcgaacacgctcatcagcgacacgacgacggtcatatgccttgatgactaccattcc 372 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 506 gactccaacacgctcatcagcgacacgacgacggtcatatgccttgatgactaccattcc 565 Query: 373 ttggacagaaccgggaggaaggagaaaggtgtgactgccctggaccccaaggcaaacgac 432 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 566 ttggacagaaccgggaggaaggagaaaggtgtgaccgccctggaccccaaggcaaacgac 625 Query: 433 tttgatctcatgtatgagcaagtgaaggcaatcaaagaaggcaaggctattgagaagcca 492 |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct: 626 tttgatctcatgtatgagcaggtgaaggcaatcaaggaaggcaaggctattgagaagcca 685 Query: 493 atctacaaccacgtcactggcctcctcgacccggcggagctcatccagccccccaagatc 552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 686 atctacaaccacgtcactggcctcctcgacccggcggagctcatccagccccccaagatc 745 Query: 553 ttcgtcatcgagggtttgcacccaatgt 580 |||||||||||||||||||||||||||| Sbjct: 746 ttcgtcatcgagggtttgcacccaatgt 773
>gb|AF529237.2| Oryza sativa (indica cultivar-group) phosphoribulokinase precursor mRNA, complete cds; nuclear gene for chloroplast product Length = 1663 Score = 537 bits (271), Expect = e-149 Identities = 500/576 (86%), Gaps = 9/576 (1%) Strand = Plus / Plus Query: 24 agcaaacatggcattctgcagcccacacaccaccacatccctgcgctccccatgcaccac 83 |||||| ||||| ||| ||||| ||| ||||||| ||||||| ||||||||||||||| Sbjct: 159 agcaaagatggcgatctccagcctacatgccaccacctccctgcactccccatgcaccac 218 Query: 84 catcccaaactcaggcttcaggcagaaccaagtcatcctcttcacaaccagaagcagcag 143 || | ||| |||||||||||||||| |||||| ||||||| |||||||||| ||| Sbjct: 219 caacacaa------gcttcaggcagaaccaggtcatcttcttcaccaccagaagcaacag 272 Query: 144 gaggagtaccacgaggca---tggagcaaggaccttccaggtctcatgcgcagttgagaa 200 |||| ||| ||| ||| | |||||||| ||||| ||||| |||||| |||| || || Sbjct: 273 gaggggtagcacaaggtacggaggagcaagaacctttcaggtttcatgctcagtcgacaa 332 Query: 201 gccaatagtgattggcctggcagcagactcgggatgtgggaaatccaccttcatgcgccg 260 |||| | ||||||||||| ||||||||||| ||||| ||||| ||||||||||||||| Sbjct: 333 gccagtggtgattggccttgcagcagactcaggatgcgggaagagcaccttcatgcgccg 392 Query: 261 gctcaccagcgtgtttggaggtgctgcagagccacccaagggcggcaacccagactcgaa 320 ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| || Sbjct: 393 gctcaccagtgtgtttggtggtgctgcagagccacccaagggtggcaacccagactcaaa 452 Query: 321 cacgctcatcagcgacacgacgacggtcatatgccttgatgactaccattccttggacag 380 ||| |||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct: 453 cacactcatcagtgacacgacaacggtgatatgcctcgatgactaccattccttggacag 512 Query: 381 aaccgggaggaaggagaaaggtgtgactgccctggaccccaaggcaaacgactttgatct 440 || || |||||||||||||||||||||||||||||||| | ||||||||| |||||||| Sbjct: 513 gactggcaggaaggagaaaggtgtgactgccctggaccctagggcaaacgattttgatct 572 Query: 441 catgtatgagcaagtgaaggcaatcaaagaaggcaaggctattgagaagccaatctacaa 500 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 573 catgtatgagcaggtgaaggcaatcaaagaaggcaaggcaattgagaagccaatctacaa 632 Query: 501 ccacgtcactggcctcctcgacccggcggagctcatccagccccccaagatcttcgtcat 560 ||| || ||||| ||||| ||||| ||||||| ||||||||||||||||| || ||||| Sbjct: 633 ccatgttactggtctcctagacccaccggagcttatccagccccccaagatttttgtcat 692 Query: 561 cgagggtttgcacccaatgtatgacgaacgtgtgag 596 ||||| || || || |||| ||| ||||||||||| Sbjct: 693 tgagggcttacatcccatgtttgatgaacgtgtgag 728
>gb|AF543191.1| Oryza sativa (indica cultivar-group) phosphoribulokinase precursor gene, complete cds Length = 2443 Score = 525 bits (265), Expect = e-146 Identities = 476/546 (87%), Gaps = 9/546 (1%) Strand = Plus / Plus Query: 24 agcaaacatggcattctgcagcccacacaccaccacatccctgcgctccccatgcaccac 83 |||||| ||||| ||| ||||| ||| ||||||| ||||||| ||||||||||||||| Sbjct: 159 agcaaagatggcgatctccagcctacatgccaccacctccctgcactccccatgcaccac 218 Query: 84 catcccaaactcaggcttcaggcagaaccaagtcatcctcttcacaaccagaagcagcag 143 || | ||| |||||||||||||||| |||||| ||||||| |||||||||| ||| Sbjct: 219 caacacaa------gcttcaggcagaaccaggtcatcttcttcaccaccagaagcaacag 272 Query: 144 gaggagtaccacgaggca---tggagcaaggaccttccaggtctcatgcgcagttgagaa 200 |||| ||| ||| ||| | |||||||| ||||| ||||| |||||| |||| || || Sbjct: 273 gaggggtagcacaaggtacggaggagcaagaacctttcaggtttcatgctcagtcgacaa 332 Query: 201 gccaatagtgattggcctggcagcagactcgggatgtgggaaatccaccttcatgcgccg 260 |||| | ||||||||||| ||||||||||| ||||| ||||| ||||||||||||||| Sbjct: 333 gccagtggtgattggccttgcagcagactcaggatgcgggaagagcaccttcatgcgccg 392 Query: 261 gctcaccagcgtgtttggaggtgctgcagagccacccaagggcggcaacccagactcgaa 320 ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| || Sbjct: 393 gctcaccagtgtgtttggtggtgctgcagagccacccaagggtggcaacccagactcaaa 452 Query: 321 cacgctcatcagcgacacgacgacggtcatatgccttgatgactaccattccttggacag 380 ||| |||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct: 453 cacactcatcagtgacacgacaacggtgatatgcctcgatgactaccattccttggacag 512 Query: 381 aaccgggaggaaggagaaaggtgtgactgccctggaccccaaggcaaacgactttgatct 440 || || |||||||||||||||||||||||||||||||| | ||||||||| |||||||| Sbjct: 513 gactggcaggaaggagaaaggtgtgactgccctggaccctagggcaaacgattttgatct 572 Query: 441 catgtatgagcaagtgaaggcaatcaaagaaggcaaggctattgagaagccaatctacaa 500 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 573 catgtatgagcaggtgaaggcaatcaaagaaggcaaggcaattgagaagccaatctacaa 632 Query: 501 ccacgtcactggcctcctcgacccggcggagctcatccagccccccaagatcttcgtcat 560 ||| || ||||| ||||| ||||| ||||||| ||||||||||||||||| || ||||| Sbjct: 633 ccatgttactggtctcctagacccaccggagcttatccagccccccaagatttttgtcat 692 Query: 561 cgaggg 566 ||||| Sbjct: 693 tgaggg 698
>ref|XM_467296.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1494 Score = 521 bits (263), Expect = e-145 Identities = 498/576 (86%), Gaps = 9/576 (1%) Strand = Plus / Plus Query: 24 agcaaacatggcattctgcagcccacacaccaccacatccctgcgctccccatgcaccac 83 |||||| ||||| ||| ||||| ||| ||||||| ||||||| ||||||||||||||| Sbjct: 13 agcaaagatggcgatctccagcctacatgccaccacctccctgcactccccatgcaccac 72 Query: 84 catcccaaactcaggcttcaggcagaaccaagtcatcctcttcacaaccagaagcagcag 143 || | ||| ||||||||||||| || |||||| ||||||| |||||||||| ||| Sbjct: 73 caacacaa------gcttcaggcagaatcaggtcatcttcttcaccaccagaagcaacag 126 Query: 144 gaggagtaccacgaggca---tggagcaaggaccttccaggtctcatgcgcagttgagaa 200 |||| ||| ||| ||| | |||||||| ||||| ||||| |||||| |||| || || Sbjct: 127 gaggggtagcacaaggtacggaggagcaagaacctttcaggtttcatgctcagtcgacaa 186 Query: 201 gccaatagtgattggcctggcagcagactcgggatgtgggaaatccaccttcatgcgccg 260 |||| | ||||||||||| ||||||||||| ||||| ||||| |||||| |||||||| Sbjct: 187 gccagtggtgattggccttgcagcagactcaggatgcgggaagagcacctttatgcgccg 246 Query: 261 gctcaccagcgtgtttggaggtgctgcagagccacccaagggcggcaacccagactcgaa 320 ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| || Sbjct: 247 gctcaccagtgtgtttggtggtgctgcagagccacccaagggtggcaacccagactcaaa 306 Query: 321 cacgctcatcagcgacacgacgacggtcatatgccttgatgactaccattccttggacag 380 ||| |||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct: 307 cacactcatcagtgacacgacaacggtgatatgcctcgatgactaccattccttggacag 366 Query: 381 aaccgggaggaaggagaaaggtgtgactgccctggaccccaaggcaaacgactttgatct 440 || || |||||||||||||||||||||||||||||||| | ||||||||| |||||||| Sbjct: 367 gactggcaggaaggagaaaggtgtgactgccctggaccctagggcaaacgattttgatct 426 Query: 441 catgtatgagcaagtgaaggcaatcaaagaaggcaaggctattgagaagccaatctacaa 500 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 427 catgtatgagcaggtgaaggcaatcaaagaaggcaaggcaattgagaagccaatctacaa 486 Query: 501 ccacgtcactggcctcctcgacccggcggagctcatccagccccccaagatcttcgtcat 560 ||| || ||||| ||||| ||||| ||||||| ||||||||||||||||| || ||||| Sbjct: 487 ccatgttactggtctcctagacccaccggagcttatccagccccccaagatttttgtcat 546 Query: 561 cgagggtttgcacccaatgtatgacgaacgtgtgag 596 ||||| || || || |||| ||| ||||||||||| Sbjct: 547 tgagggcttacatcccatgtttgatgaacgtgtgag 582
>ref|XM_507520.1| PREDICTED Oryza sativa (japonica cultivar-group), P0459B01.11 mRNA Length = 1556 Score = 521 bits (263), Expect = e-145 Identities = 498/576 (86%), Gaps = 9/576 (1%) Strand = Plus / Plus Query: 24 agcaaacatggcattctgcagcccacacaccaccacatccctgcgctccccatgcaccac 83 |||||| ||||| ||| ||||| ||| ||||||| ||||||| ||||||||||||||| Sbjct: 55 agcaaagatggcgatctccagcctacatgccaccacctccctgcactccccatgcaccac 114 Query: 84 catcccaaactcaggcttcaggcagaaccaagtcatcctcttcacaaccagaagcagcag 143 || | ||| ||||||||||||| || |||||| ||||||| |||||||||| ||| Sbjct: 115 caacacaa------gcttcaggcagaatcaggtcatcttcttcaccaccagaagcaacag 168 Query: 144 gaggagtaccacgaggca---tggagcaaggaccttccaggtctcatgcgcagttgagaa 200 |||| ||| ||| ||| | |||||||| ||||| ||||| |||||| |||| || || Sbjct: 169 gaggggtagcacaaggtacggaggagcaagaacctttcaggtttcatgctcagtcgacaa 228 Query: 201 gccaatagtgattggcctggcagcagactcgggatgtgggaaatccaccttcatgcgccg 260 |||| | ||||||||||| ||||||||||| ||||| ||||| |||||| |||||||| Sbjct: 229 gccagtggtgattggccttgcagcagactcaggatgcgggaagagcacctttatgcgccg 288 Query: 261 gctcaccagcgtgtttggaggtgctgcagagccacccaagggcggcaacccagactcgaa 320 ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| || Sbjct: 289 gctcaccagtgtgtttggtggtgctgcagagccacccaagggtggcaacccagactcaaa 348 Query: 321 cacgctcatcagcgacacgacgacggtcatatgccttgatgactaccattccttggacag 380 ||| |||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct: 349 cacactcatcagtgacacgacaacggtgatatgcctcgatgactaccattccttggacag 408 Query: 381 aaccgggaggaaggagaaaggtgtgactgccctggaccccaaggcaaacgactttgatct 440 || || |||||||||||||||||||||||||||||||| | ||||||||| |||||||| Sbjct: 409 gactggcaggaaggagaaaggtgtgactgccctggaccctagggcaaacgattttgatct 468 Query: 441 catgtatgagcaagtgaaggcaatcaaagaaggcaaggctattgagaagccaatctacaa 500 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 469 catgtatgagcaggtgaaggcaatcaaagaaggcaaggcaattgagaagccaatctacaa 528 Query: 501 ccacgtcactggcctcctcgacccggcggagctcatccagccccccaagatcttcgtcat 560 ||| || ||||| ||||| ||||| ||||||| ||||||||||||||||| || ||||| Sbjct: 529 ccatgttactggtctcctagacccaccggagcttatccagccccccaagatttttgtcat 588 Query: 561 cgagggtttgcacccaatgtatgacgaacgtgtgag 596 ||||| || || || |||| ||| ||||||||||| Sbjct: 589 tgagggcttacatcccatgtttgatgaacgtgtgag 624
>ref|XM_506922.2| PREDICTED Oryza sativa (japonica cultivar-group), P0459B01.11 mRNA Length = 1626 Score = 521 bits (263), Expect = e-145 Identities = 498/576 (86%), Gaps = 9/576 (1%) Strand = Plus / Plus Query: 24 agcaaacatggcattctgcagcccacacaccaccacatccctgcgctccccatgcaccac 83 |||||| ||||| ||| ||||| ||| ||||||| ||||||| ||||||||||||||| Sbjct: 147 agcaaagatggcgatctccagcctacatgccaccacctccctgcactccccatgcaccac 206 Query: 84 catcccaaactcaggcttcaggcagaaccaagtcatcctcttcacaaccagaagcagcag 143 || | ||| ||||||||||||| || |||||| ||||||| |||||||||| ||| Sbjct: 207 caacacaa------gcttcaggcagaatcaggtcatcttcttcaccaccagaagcaacag 260 Query: 144 gaggagtaccacgaggca---tggagcaaggaccttccaggtctcatgcgcagttgagaa 200 |||| ||| ||| ||| | |||||||| ||||| ||||| |||||| |||| || || Sbjct: 261 gaggggtagcacaaggtacggaggagcaagaacctttcaggtttcatgctcagtcgacaa 320 Query: 201 gccaatagtgattggcctggcagcagactcgggatgtgggaaatccaccttcatgcgccg 260 |||| | ||||||||||| ||||||||||| ||||| ||||| |||||| |||||||| Sbjct: 321 gccagtggtgattggccttgcagcagactcaggatgcgggaagagcacctttatgcgccg 380 Query: 261 gctcaccagcgtgtttggaggtgctgcagagccacccaagggcggcaacccagactcgaa 320 ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| || Sbjct: 381 gctcaccagtgtgtttggtggtgctgcagagccacccaagggtggcaacccagactcaaa 440 Query: 321 cacgctcatcagcgacacgacgacggtcatatgccttgatgactaccattccttggacag 380 ||| |||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct: 441 cacactcatcagtgacacgacaacggtgatatgcctcgatgactaccattccttggacag 500 Query: 381 aaccgggaggaaggagaaaggtgtgactgccctggaccccaaggcaaacgactttgatct 440 || || |||||||||||||||||||||||||||||||| | ||||||||| |||||||| Sbjct: 501 gactggcaggaaggagaaaggtgtgactgccctggaccctagggcaaacgattttgatct 560 Query: 441 catgtatgagcaagtgaaggcaatcaaagaaggcaaggctattgagaagccaatctacaa 500 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 561 catgtatgagcaggtgaaggcaatcaaagaaggcaaggcaattgagaagccaatctacaa 620 Query: 501 ccacgtcactggcctcctcgacccggcggagctcatccagccccccaagatcttcgtcat 560 ||| || ||||| ||||| ||||| ||||||| ||||||||||||||||| || ||||| Sbjct: 621 ccatgttactggtctcctagacccaccggagcttatccagccccccaagatttttgtcat 680 Query: 561 cgagggtttgcacccaatgtatgacgaacgtgtgag 596 ||||| || || || |||| ||| ||||||||||| Sbjct: 681 tgagggcttacatcccatgtttgatgaacgtgtgag 716
>dbj|AK104857.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-C08, full insert sequence Length = 1494 Score = 521 bits (263), Expect = e-145 Identities = 498/576 (86%), Gaps = 9/576 (1%) Strand = Plus / Plus Query: 24 agcaaacatggcattctgcagcccacacaccaccacatccctgcgctccccatgcaccac 83 |||||| ||||| ||| ||||| ||| ||||||| ||||||| ||||||||||||||| Sbjct: 13 agcaaagatggcgatctccagcctacatgccaccacctccctgcactccccatgcaccac 72 Query: 84 catcccaaactcaggcttcaggcagaaccaagtcatcctcttcacaaccagaagcagcag 143 || | ||| ||||||||||||| || |||||| ||||||| |||||||||| ||| Sbjct: 73 caacacaa------gcttcaggcagaatcaggtcatcttcttcaccaccagaagcaacag 126 Query: 144 gaggagtaccacgaggca---tggagcaaggaccttccaggtctcatgcgcagttgagaa 200 |||| ||| ||| ||| | |||||||| ||||| ||||| |||||| |||| || || Sbjct: 127 gaggggtagcacaaggtacggaggagcaagaacctttcaggtttcatgctcagtcgacaa 186 Query: 201 gccaatagtgattggcctggcagcagactcgggatgtgggaaatccaccttcatgcgccg 260 |||| | ||||||||||| ||||||||||| ||||| ||||| |||||| |||||||| Sbjct: 187 gccagtggtgattggccttgcagcagactcaggatgcgggaagagcacctttatgcgccg 246 Query: 261 gctcaccagcgtgtttggaggtgctgcagagccacccaagggcggcaacccagactcgaa 320 ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| || Sbjct: 247 gctcaccagtgtgtttggcggtgctgcagagccacccaagggtggcaacccagactcaaa 306 Query: 321 cacgctcatcagcgacacgacgacggtcatatgccttgatgactaccattccttggacag 380 ||| |||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct: 307 cacactcatcagtgacacgacaacggtgatatgcctcgatgactaccattccttggacag 366 Query: 381 aaccgggaggaaggagaaaggtgtgactgccctggaccccaaggcaaacgactttgatct 440 || || |||||||||||||||||||||||||||||||| | ||||||||| |||||||| Sbjct: 367 gactggcaggaaggagaaaggtgtgactgccctggaccctagggcaaacgattttgatct 426 Query: 441 catgtatgagcaagtgaaggcaatcaaagaaggcaaggctattgagaagccaatctacaa 500 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 427 catgtatgagcaggtgaaggcaatcaaagaaggcaaggcaattgagaagccaatctacaa 486 Query: 501 ccacgtcactggcctcctcgacccggcggagctcatccagccccccaagatcttcgtcat 560 ||| || ||||| ||||| ||||| ||||||| ||||||||||||||||| || ||||| Sbjct: 487 ccatgttactggtctcctagacccaccggagcttatccagccccccaagatttttgtcat 546 Query: 561 cgagggtttgcacccaatgtatgacgaacgtgtgag 596 ||||| || || || |||| ||| ||||||||||| Sbjct: 547 tgagggcttacatcccatgtttgatgaacgtgtgag 582
>dbj|AK099461.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023E19, full insert sequence Length = 1625 Score = 513 bits (259), Expect = e-142 Identities = 497/576 (86%), Gaps = 9/576 (1%) Strand = Plus / Plus Query: 24 agcaaacatggcattctgcagcccacacaccaccacatccctgcgctccccatgcaccac 83 |||||| ||||| ||| ||||| ||| ||||||| ||||||| ||||||||||||||| Sbjct: 146 agcaaagatggcgatctccagcctacatgccaccacctccctgcactccccatgcaccac 205 Query: 84 catcccaaactcaggcttcaggcagaaccaagtcatcctcttcacaaccagaagcagcag 143 || | ||| ||||||||||||| || |||||| ||||||| |||||||||| ||| Sbjct: 206 caacacaa------gcttcaggcagaatcaggtcatcttcttcaccaccagaagcaacag 259 Query: 144 gaggagtaccacgaggca---tggagcaaggaccttccaggtctcatgcgcagttgagaa 200 ||| ||| ||| ||| | |||||||| ||||| ||||| |||||| |||| || || Sbjct: 260 taggggtagcacaaggtacggaggagcaagaacctttcaggtttcatgctcagtcgacaa 319 Query: 201 gccaatagtgattggcctggcagcagactcgggatgtgggaaatccaccttcatgcgccg 260 |||| | ||||||||||| ||||||||||| ||||| ||||| |||||| |||||||| Sbjct: 320 gccagtggtgattggccttgcagcagactcaggatgcgggaagagcacctttatgcgccg 379 Query: 261 gctcaccagcgtgtttggaggtgctgcagagccacccaagggcggcaacccagactcgaa 320 ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| || Sbjct: 380 gctcaccagtgtgtttggtggtgctgcagagccacccaagggtggcaacccagactcaaa 439 Query: 321 cacgctcatcagcgacacgacgacggtcatatgccttgatgactaccattccttggacag 380 ||| |||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct: 440 cacactcatcagtgacacgacaacggtgatatgcctcgatgactaccattccttggacag 499 Query: 381 aaccgggaggaaggagaaaggtgtgactgccctggaccccaaggcaaacgactttgatct 440 || || |||||||||||||||||||||||||||||||| | ||||||||| |||||||| Sbjct: 500 gactggcaggaaggagaaaggtgtgactgccctggaccctagggcaaacgattttgatct 559 Query: 441 catgtatgagcaagtgaaggcaatcaaagaaggcaaggctattgagaagccaatctacaa 500 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 560 catgtatgagcaggtgaaggcaatcaaagaaggcaaggcaattgagaagccaatctacaa 619 Query: 501 ccacgtcactggcctcctcgacccggcggagctcatccagccccccaagatcttcgtcat 560 ||| || ||||| ||||| ||||| ||||||| ||||||||||||||||| || ||||| Sbjct: 620 ccatgttactggtctcctagacccaccggagcttatccagccccccaagatttttgtcat 679 Query: 561 cgagggtttgcacccaatgtatgacgaacgtgtgag 596 ||||| || || || |||| ||| ||||||||||| Sbjct: 680 tgagggcttacatcccatgtttgatgaacgtgtgag 715
>dbj|AK066164.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013056N04, full insert sequence Length = 1555 Score = 513 bits (259), Expect = e-142 Identities = 497/576 (86%), Gaps = 9/576 (1%) Strand = Plus / Plus Query: 24 agcaaacatggcattctgcagcccacacaccaccacatccctgcgctccccatgcaccac 83 |||||| ||||| ||| ||||| ||| ||||||| ||||||| ||||||||||||||| Sbjct: 55 agcaaagatggcgatctccagcctacatgccaccacctccctgcactccccatgcaccac 114 Query: 84 catcccaaactcaggcttcaggcagaaccaagtcatcctcttcacaaccagaagcagcag 143 || | ||| ||||||||||||| || |||||| ||||||| |||||||||| ||| Sbjct: 115 caacacaa------gcttcaggcagaatcaggtcatcttcttcaccaccagaagcaacag 168 Query: 144 gaggagtaccacgaggca---tggagcaaggaccttccaggtctcatgcgcagttgagaa 200 |||| ||| ||| ||| | |||||||| ||||| ||||| |||||| |||| || || Sbjct: 169 gaggggtagcacaaggtacggaggagcaagaacctttcaggtttcatgctcagtcgacaa 228 Query: 201 gccaatagtgattggcctggcagcagactcgggatgtgggaaatccaccttcatgcgccg 260 |||| | ||||||||||| ||||||||||| ||||| ||||| |||||| |||||||| Sbjct: 229 gccagtggtgattggccttgcagcagactcaggatgcgggaagggcacctttatgcgccg 288 Query: 261 gctcaccagcgtgtttggaggtgctgcagagccacccaagggcggcaacccagactcgaa 320 ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| || Sbjct: 289 gctcaccagtgtgtttggtggtgctgcagagccacccaagggtggcaacccagactcaaa 348 Query: 321 cacgctcatcagcgacacgacgacggtcatatgccttgatgactaccattccttggacag 380 ||| ||||| || |||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct: 349 cacactcatgagtgacacgacaacggtgatatgcctcgatgactaccattccttggacag 408 Query: 381 aaccgggaggaaggagaaaggtgtgactgccctggaccccaaggcaaacgactttgatct 440 || || |||||||||||||||||||||||||||||||| | ||||||||| |||||||| Sbjct: 409 gactggcaggaaggagaaaggtgtgactgccctggaccctagggcaaacgattttgatct 468 Query: 441 catgtatgagcaagtgaaggcaatcaaagaaggcaaggctattgagaagccaatctacaa 500 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 469 catgtatgagcaggtgaaggcaatcaaagaaggcaaggcaattgagaagccaatctacaa 528 Query: 501 ccacgtcactggcctcctcgacccggcggagctcatccagccccccaagatcttcgtcat 560 ||| || ||||| ||||| ||||| ||||||| ||||||||||||||||| || ||||| Sbjct: 529 ccatgttactggtctcctagacccaccggagcttatccagccccccaagatttttgtcat 588 Query: 561 cgagggtttgcacccaatgtatgacgaacgtgtgag 596 ||||| || || || |||| ||| ||||||||||| Sbjct: 589 tgagggcttacatcccatgtttgatgaacgtgtgag 624
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 509 bits (257), Expect = e-141 Identities = 474/546 (86%), Gaps = 9/546 (1%) Strand = Plus / Plus Query: 24 agcaaacatggcattctgcagcccacacaccaccacatccctgcgctccccatgcaccac 83 |||||| ||||| ||| ||||| ||| ||||||| ||||||| ||||||||||||||| Sbjct: 28720501 agcaaagatggcgatctccagcctacatgccaccacctccctgcactccccatgcaccac 28720560 Query: 84 catcccaaactcaggcttcaggcagaaccaagtcatcctcttcacaaccagaagcagcag 143 || | ||| ||||||||||||| || |||||| ||||||| |||||||||| ||| Sbjct: 28720561 caacacaa------gcttcaggcagaatcaggtcatcttcttcaccaccagaagcaacag 28720614 Query: 144 gaggagtaccacgaggca---tggagcaaggaccttccaggtctcatgcgcagttgagaa 200 |||| ||| ||| ||| | |||||||| ||||| ||||| |||||| |||| || || Sbjct: 28720615 gaggggtagcacaaggtacggaggagcaagaacctttcaggtttcatgctcagtcgacaa 28720674 Query: 201 gccaatagtgattggcctggcagcagactcgggatgtgggaaatccaccttcatgcgccg 260 |||| | ||||||||||| ||||||||||| ||||| ||||| |||||| |||||||| Sbjct: 28720675 gccagtggtgattggccttgcagcagactcaggatgcgggaagagcacctttatgcgccg 28720734 Query: 261 gctcaccagcgtgtttggaggtgctgcagagccacccaagggcggcaacccagactcgaa 320 ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| || Sbjct: 28720735 gctcaccagtgtgtttggtggtgctgcagagccacccaagggtggcaacccagactcaaa 28720794 Query: 321 cacgctcatcagcgacacgacgacggtcatatgccttgatgactaccattccttggacag 380 ||| |||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct: 28720795 cacactcatcagtgacacgacaacggtgatatgcctcgatgactaccattccttggacag 28720854 Query: 381 aaccgggaggaaggagaaaggtgtgactgccctggaccccaaggcaaacgactttgatct 440 || || |||||||||||||||||||||||||||||||| | ||||||||| |||||||| Sbjct: 28720855 gactggcaggaaggagaaaggtgtgactgccctggaccctagggcaaacgattttgatct 28720914 Query: 441 catgtatgagcaagtgaaggcaatcaaagaaggcaaggctattgagaagccaatctacaa 500 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 28720915 catgtatgagcaggtgaaggcaatcaaagaaggcaaggcaattgagaagccaatctacaa 28720974 Query: 501 ccacgtcactggcctcctcgacccggcggagctcatccagccccccaagatcttcgtcat 560 ||| || ||||| ||||| ||||| ||||||| ||||||||||||||||| || ||||| Sbjct: 28720975 ccatgttactggtctcctagacccaccggagcttatccagccccccaagatttttgtcat 28721034 Query: 561 cgaggg 566 ||||| Sbjct: 28721035 tgaggg 28721040
>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0459B01 Length = 163087 Score = 509 bits (257), Expect = e-141 Identities = 474/546 (86%), Gaps = 9/546 (1%) Strand = Plus / Plus Query: 24 agcaaacatggcattctgcagcccacacaccaccacatccctgcgctccccatgcaccac 83 |||||| ||||| ||| ||||| ||| ||||||| ||||||| ||||||||||||||| Sbjct: 37074 agcaaagatggcgatctccagcctacatgccaccacctccctgcactccccatgcaccac 37133 Query: 84 catcccaaactcaggcttcaggcagaaccaagtcatcctcttcacaaccagaagcagcag 143 || | ||| ||||||||||||| || |||||| ||||||| |||||||||| ||| Sbjct: 37134 caacacaa------gcttcaggcagaatcaggtcatcttcttcaccaccagaagcaacag 37187 Query: 144 gaggagtaccacgaggca---tggagcaaggaccttccaggtctcatgcgcagttgagaa 200 |||| ||| ||| ||| | |||||||| ||||| ||||| |||||| |||| || || Sbjct: 37188 gaggggtagcacaaggtacggaggagcaagaacctttcaggtttcatgctcagtcgacaa 37247 Query: 201 gccaatagtgattggcctggcagcagactcgggatgtgggaaatccaccttcatgcgccg 260 |||| | ||||||||||| ||||||||||| ||||| ||||| |||||| |||||||| Sbjct: 37248 gccagtggtgattggccttgcagcagactcaggatgcgggaagagcacctttatgcgccg 37307 Query: 261 gctcaccagcgtgtttggaggtgctgcagagccacccaagggcggcaacccagactcgaa 320 ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| || Sbjct: 37308 gctcaccagtgtgtttggtggtgctgcagagccacccaagggtggcaacccagactcaaa 37367 Query: 321 cacgctcatcagcgacacgacgacggtcatatgccttgatgactaccattccttggacag 380 ||| |||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct: 37368 cacactcatcagtgacacgacaacggtgatatgcctcgatgactaccattccttggacag 37427 Query: 381 aaccgggaggaaggagaaaggtgtgactgccctggaccccaaggcaaacgactttgatct 440 || || |||||||||||||||||||||||||||||||| | ||||||||| |||||||| Sbjct: 37428 gactggcaggaaggagaaaggtgtgactgccctggaccctagggcaaacgattttgatct 37487 Query: 441 catgtatgagcaagtgaaggcaatcaaagaaggcaaggctattgagaagccaatctacaa 500 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 37488 catgtatgagcaggtgaaggcaatcaaagaaggcaaggcaattgagaagccaatctacaa 37547 Query: 501 ccacgtcactggcctcctcgacccggcggagctcatccagccccccaagatcttcgtcat 560 ||| || ||||| ||||| ||||| ||||||| ||||||||||||||||| || ||||| Sbjct: 37548 ccatgttactggtctcctagacccaccggagcttatccagccccccaagatttttgtcat 37607 Query: 561 cgaggg 566 ||||| Sbjct: 37608 tgaggg 37613
>gb|U97113.1|FRU97113 Festuca rubra putative phosphoribulokinase mc7214rc mRNA, partial cds Length = 307 Score = 402 bits (203), Expect = e-109 Identities = 258/279 (92%) Strand = Plus / Plus Query: 27 aaacatggcattctgcagcccacacaccaccacatccctgcgctccccatgcaccaccat 86 ||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||| Sbjct: 23 aaacatggcattctgcagctcacacaccaccacatccctgcactccccacgcaccaccat 82 Query: 87 cccaaactcaggcttcaggcagaaccaagtcatcctcttcacaaccagaagcagcaggag 146 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 83 cccaaactcaggcttcaggcagaaccaagtcatcctcttcacaaccagaacgagcaggag 142 Query: 147 gagtaccacgaggcatggagcaaggaccttccaggtctcatgcgcagttgagaagccaat 206 ||||| ||||||| |||||||||||||||||||||| ||||||||||||| |||||||| Sbjct: 143 gagtaacacgaggaatggagcaaggaccttccaggttacatgcgcagttgacaagccaat 202 Query: 207 agtgattggcctggcagcagactcgggatgtgggaaatccaccttcatgcgccggctcac 266 |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| Sbjct: 203 agtgattggcctggcagcagactctggatgtgggaaatccactttcatgcnbnnnnncac 262 Query: 267 cagcgtgtttggaggtgctgcagagccacccaagggcgg 305 |||||||||||| ||||||||||||||||||| |||||| Sbjct: 263 cagcgtgtttggtggtgctgcagagccacccaggggcgg 301
>gb|AY106347.1| Zea mays PCO092382 mRNA sequence Length = 1513 Score = 323 bits (163), Expect = 4e-85 Identities = 352/415 (84%) Strand = Plus / Plus Query: 166 gcaaggaccttccaggtctcatgcgcagttgagaagccaatagtgattggcctggcagca 225 ||||||| |||||||||||| ||| | || || ||||| | |||||||||||||| ||| Sbjct: 184 gcaaggagcttccaggtctcgtgctccgtcgacaagccggtggtgattggcctggcggca 243 Query: 226 gactcgggatgtgggaaatccaccttcatgcgccggctcaccagcgtgtttggaggtgct 285 ||||| || || || || ||||||||||||||||||||||||||| || || || || Sbjct: 244 gactcagggtgcggcaagagcaccttcatgcgccggctcaccagcgtcttcggtggcgcc 303 Query: 286 gcagagccacccaagggcggcaacccagactcgaacacgctcatcagcgacacgacgacg 345 || ||||| ||||||||||| ||||| ||||| |||||||||||||| ||||| ||||| Sbjct: 304 gcggagccgcccaagggcgggaacccggactccaacacgctcatcagtgacaccacgaca 363 Query: 346 gtcatatgccttgatgactaccattccttggacagaaccgggaggaaggagaaaggtgtg 405 || |||||||| || |||||||||||| ||||||| | ||| |||||||||||||||||| Sbjct: 364 gtgatatgcctcgacgactaccattccctggacaggaacggcaggaaggagaaaggtgtg 423 Query: 406 actgccctggaccccaaggcaaacgactttgatctcatgtatgagcaagtgaaggcaatc 465 || ||||| ||||| | ||| ||| |||||||||||||||||||||| |||||||| ||| Sbjct: 424 accgccctcgaccctagggccaacaactttgatctcatgtatgagcaggtgaaggcgatc 483 Query: 466 aaagaaggcaaggctattgagaagccaatctacaaccacgtcactggcctcctcgacccg 525 || |||||| |||| | |||||||| ||||||||||| |||||||||||||||||||| Sbjct: 484 aaggaaggccaggcagtcgagaagcccatctacaaccatgtcactggcctcctcgaccct 543 Query: 526 gcggagctcatccagccccccaagatcttcgtcatcgagggtttgcacccaatgt 580 ||||||| ||| ||| || ||||| |||||||| || ||| |||||||||||| Sbjct: 544 ccggagcttatcgcgccaccaaagattttcgtcattgaaggtctgcacccaatgt 598 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 38 tctgcagcccacacaccaccacatccctgcgctccccatgcaccaccatcccaaactcag 97 |||||||| | ||||| ||||| |||||||||||||||||||| ||| || | ||| ||| Sbjct: 53 tctgcagcgcgcacactaccacctccctgcgctccccatgcacgaccgtctcgaacgcag 112 Query: 98 gcttcaggcagaaccaagtcatc 120 | | |||||||| ||||||||| Sbjct: 113 gtctgaggcagaagcaagtcatc 135
>dbj|AP004488.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT02F05, TM0020, complete sequence Length = 80920 Score = 133 bits (67), Expect = 7e-28 Identities = 220/271 (81%) Strand = Plus / Plus Query: 203 caatagtgattggcctggcagcagactcgggatgtgggaaatccaccttcatgcgccggc 262 |||| |||||||| || || || ||||| ||||||||||| |||||||||| | ||| Sbjct: 19692 caattgtgattggtctagctgctgactcaggatgtgggaagagcaccttcatgaggaggc 19751 Query: 263 tcaccagcgtgtttggaggtgctgcagagccacccaagggcggcaacccagactcgaaca 322 |||| || ||||||||||| || ||||||||||| ||||| || |||||||| || |||| Sbjct: 19752 tcacaagtgtgtttggaggagcagcagagccaccaaagggtgggaacccagattccaaca 19811 Query: 323 cgctcatcagcgacacgacgacggtcatatgccttgatgactaccattccttggacagaa 382 | |||||||| ||||| || || || ||||| | ||||| |||||||| | || |||| Sbjct: 19812 ctctcatcagtgacaccaccactgtgatatgtttggatgattaccattcacttgatagaa 19871 Query: 383 ccgggaggaaggagaaaggtgtgactgccctggaccccaaggcaaacgactttgatctca 442 | || || ||||| || ||||| ||||| || ||||| || || || || |||||||||| Sbjct: 19872 ctggtagaaaggaaaagggtgtcactgcacttgacccaaaagctaatgattttgatctca 19931 Query: 443 tgtatgagcaagtgaaggcaatcaaagaagg 473 ||||||||||||| |||||||| || ||||| Sbjct: 19932 tgtatgagcaagttaaggcaattaaggaagg 19962
>ref|XM_462675.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1488 Score = 103 bits (52), Expect = 7e-19 Identities = 94/108 (87%) Strand = Plus / Plus Query: 486 gaagccaatctacaaccacgtcactggcctcctcgacccggcggagctcatccagccccc 545 |||||| ||||||||||||| ||| ||||||||||||||| | ||||||||| ||||| Sbjct: 435 gaagcccatctacaaccacgccacgggcctcctcgacccgccagagctcatcactccccc 494 Query: 546 caagatcttcgtcatcgagggtttgcacccaatgtatgacgaacgtgt 593 ||||||| ||||| ||||||| |||||||||||||||| || ||||| Sbjct: 495 caagatcctcgtcgtcgagggcctgcacccaatgtatgatgagcgtgt 542
>ref|XM_473730.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1488 Score = 103 bits (52), Expect = 7e-19 Identities = 94/108 (87%) Strand = Plus / Plus Query: 486 gaagccaatctacaaccacgtcactggcctcctcgacccggcggagctcatccagccccc 545 |||||| ||||||||||||| ||| ||||||||||||||| | ||||||||| ||||| Sbjct: 435 gaagcccatctacaaccacgccacgggcctcctcgacccgccagagctcatcactccccc 494 Query: 546 caagatcttcgtcatcgagggtttgcacccaatgtatgacgaacgtgt 593 ||||||| ||||| ||||||| |||||||||||||||| || ||||| Sbjct: 495 caagatcctcgtcgtcgagggcctgcacccaatgtatgatgagcgtgt 542
>emb|AL731579.4|OSJN00225 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006A01, complete sequence Length = 143157 Score = 93.7 bits (47), Expect = 6e-16 Identities = 83/95 (87%) Strand = Plus / Minus Query: 486 gaagccaatctacaaccacgtcactggcctcctcgacccggcggagctcatccagccccc 545 |||||| ||||||||||||| ||| ||||||||||||||| | ||||||||| ||||| Sbjct: 121337 gaagcccatctacaaccacgccacgggcctcctcgacccgccagagctcatcactccccc 121278 Query: 546 caagatcttcgtcatcgagggtttgcacccaatgt 580 ||||||| ||||| ||||||| |||||||||||| Sbjct: 121277 caagatcctcgtcgtcgagggcctgcacccaatgt 121243
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 93.7 bits (47), Expect = 6e-16 Identities = 83/95 (87%) Strand = Plus / Minus Query: 486 gaagccaatctacaaccacgtcactggcctcctcgacccggcggagctcatccagccccc 545 |||||| ||||||||||||| ||| ||||||||||||||| | ||||||||| ||||| Sbjct: 30142361 gaagcccatctacaaccacgccacgggcctcctcgacccgccagagctcatcactccccc 30142302 Query: 546 caagatcttcgtcatcgagggtttgcacccaatgt 580 ||||||| ||||| ||||||| |||||||||||| Sbjct: 30142301 caagatcctcgtcgtcgagggcctgcacccaatgt 30142267 Score = 93.7 bits (47), Expect = 6e-16 Identities = 83/95 (87%) Strand = Plus / Minus Query: 486 gaagccaatctacaaccacgtcactggcctcctcgacccggcggagctcatccagccccc 545 |||||| ||||||||||||| ||| ||||||||||||||| | ||||||||| ||||| Sbjct: 30081658 gaagcccatctacaaccacgccacgggcctcctcgacccgccagagctcatcactccccc 30081599 Query: 546 caagatcttcgtcatcgagggtttgcacccaatgt 580 ||||||| ||||| ||||||| |||||||||||| Sbjct: 30081598 caagatcctcgtcgtcgagggcctgcacccaatgt 30081564
>emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNba0093F12, complete sequence Length = 186142 Score = 93.7 bits (47), Expect = 6e-16 Identities = 83/95 (87%) Strand = Plus / Minus Query: 486 gaagccaatctacaaccacgtcactggcctcctcgacccggcggagctcatccagccccc 545 |||||| ||||||||||||| ||| ||||||||||||||| | ||||||||| ||||| Sbjct: 38769 gaagcccatctacaaccacgccacgggcctcctcgacccgccagagctcatcactccccc 38710 Query: 546 caagatcttcgtcatcgagggtttgcacccaatgt 580 ||||||| ||||| ||||||| |||||||||||| Sbjct: 38709 caagatcctcgtcgtcgagggcctgcacccaatgt 38675
>gb|M73707.1|CIPPRK Mesembryanthemum crystallinum phosphoribulokinase mRNA, complete CDS Length = 1520 Score = 93.7 bits (47), Expect = 6e-16 Identities = 191/239 (79%) Strand = Plus / Plus Query: 358 gatgactaccattccttggacagaaccgggaggaaggagaaaggtgtgactgccctggac 417 ||||| ||||||||| | || || || |||||||| |||||||| || ||||| |||| Sbjct: 433 gatgattaccattcccttgataggacagggaggaaagagaaaggagttactgctttggat 492 Query: 418 cccaaggcaaacgactttgatctcatgtatgagcaagtgaaggcaatcaaagaaggcaag 477 || | || || || ||||| ||||||||||||||||| ||||| | |||||||| ||| Sbjct: 493 ccaagagccaatgattttgacctcatgtatgagcaagttaaggctttgaaagaaggtaag 552 Query: 478 gctattgagaagccaatctacaaccacgtcactggcctcctcgacccggcggagctcatc 537 ||| |||||||||| || |||||||| || |||||| | | || | | ||||||||| Sbjct: 553 gctgttgagaagcctatttacaaccatgttactggcttgttggatgcacctgagctcatc 612 Query: 538 cagccccccaagatcttcgtcatcgagggtttgcacccaatgtatgacgaacgtgtgag 596 |||| || |||||||| ||||| || ||||||||||| |||| |||| ||||||||| Sbjct: 613 aagccacctaagatcttggtcattgaaggtttgcaccctatgtttgactcacgtgtgag 671
>ref|NM_102940.3| Arabidopsis thaliana ATP binding / kinase/ phosphoribulokinase/ uridine kinase AT1G32060 mRNA, complete cds Length = 1539 Score = 85.7 bits (43), Expect = 2e-13 Identities = 109/131 (83%) Strand = Plus / Plus Query: 247 accttcatgcgccggctcaccagcgtgtttggaggtgctgcagagccacccaagggcggc 306 ||||| ||||| ||||||||||||| ||||| || ||||| ||||||| || ||||| Sbjct: 311 acctttatgcggaggctcaccagcgtctttggtggcgctgctaagccaccaaaaggcggg 370 Query: 307 aacccagactcgaacacgctcatcagcgacacgacgacggtcatatgccttgatgactac 366 ||||| || || ||||| ||||||||||||||||| || || || || |||||||| ||| Sbjct: 371 aaccctgattccaacacactcatcagcgacacgaccactgtgatctgtcttgatgattac 430 Query: 367 cattccttgga 377 ||||| ||||| Sbjct: 431 cattctttgga 441 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 430 gactttgatctcatgtatgagcaagt 455 |||||||||||||||||||||||||| Sbjct: 494 gactttgatctcatgtatgagcaagt 519
>gb|BT000019.1| Arabidopsis thaliana phosphoribulokinase precursor (At1g32060) mRNA, complete cds Length = 1247 Score = 85.7 bits (43), Expect = 2e-13 Identities = 109/131 (83%) Strand = Plus / Plus Query: 247 accttcatgcgccggctcaccagcgtgtttggaggtgctgcagagccacccaagggcggc 306 ||||| ||||| ||||||||||||| ||||| || ||||| ||||||| || ||||| Sbjct: 193 acctttatgcggaggctcaccagcgtctttggtggcgctgctaagccaccaaaaggcggg 252 Query: 307 aacccagactcgaacacgctcatcagcgacacgacgacggtcatatgccttgatgactac 366 ||||| || || ||||| ||||||||||||||||| || || || || |||||||| ||| Sbjct: 253 aaccctgattccaacacactcatcagcgacacgaccactgtgatctgtcttgatgattac 312 Query: 367 cattccttgga 377 ||||| ||||| Sbjct: 313 cattctttgga 323 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 430 gactttgatctcatgtatgagcaagt 455 |||||||||||||||||||||||||| Sbjct: 376 gactttgatctcatgtatgagcaagt 401
>gb|AY128355.1| Arabidopsis thaliana phosphoribulokinase precursor (At1g32060) mRNA, complete cds Length = 1503 Score = 85.7 bits (43), Expect = 2e-13 Identities = 109/131 (83%) Strand = Plus / Plus Query: 247 accttcatgcgccggctcaccagcgtgtttggaggtgctgcagagccacccaagggcggc 306 ||||| ||||| ||||||||||||| ||||| || ||||| ||||||| || ||||| Sbjct: 299 acctttatgcggaggctcaccagcgtctttggtggcgctgctaagccaccaaaaggcggg 358 Query: 307 aacccagactcgaacacgctcatcagcgacacgacgacggtcatatgccttgatgactac 366 ||||| || || ||||| ||||||||||||||||| || || || || |||||||| ||| Sbjct: 359 aaccctgattccaacacactcatcagcgacacgaccactgtgatctgtcttgatgattac 418 Query: 367 cattccttgga 377 ||||| ||||| Sbjct: 419 cattctttgga 429 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 430 gactttgatctcatgtatgagcaagt 455 |||||||||||||||||||||||||| Sbjct: 482 gactttgatctcatgtatgagcaagt 507
>emb|X58149.1|ATPRK A.thaliana PRKase gene for Ribulose-5-phosphate kinase Length = 1495 Score = 85.7 bits (43), Expect = 2e-13 Identities = 109/131 (83%) Strand = Plus / Plus Query: 247 accttcatgcgccggctcaccagcgtgtttggaggtgctgcagagccacccaagggcggc 306 ||||| ||||| ||||||||||||| ||||| || ||||| ||||||| || ||||| Sbjct: 271 acctttatgcggaggctcaccagcgtctttggtggcgctgctaagccaccaaaaggcggg 330 Query: 307 aacccagactcgaacacgctcatcagcgacacgacgacggtcatatgccttgatgactac 366 ||||| || || ||||| ||||||||||||||||| || || || || |||||||| ||| Sbjct: 331 aaccctgattccaacacactcatcagcgacacgaccactgtgatctgtcttgatgattac 390 Query: 367 cattccttgga 377 ||||| ||||| Sbjct: 391 cattctttgga 401 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 430 gactttgatctcatgtatgagcaagt 455 |||||||||||||||||||||||||| Sbjct: 454 gactttgatctcatgtatgagcaagt 479
>gb|AY044335.1| Arabidopsis thaliana Unknown protein (T12O21.4) mRNA, complete cds Length = 1240 Score = 85.7 bits (43), Expect = 2e-13 Identities = 109/131 (83%) Strand = Plus / Plus Query: 247 accttcatgcgccggctcaccagcgtgtttggaggtgctgcagagccacccaagggcggc 306 ||||| ||||| ||||||||||||| ||||| || ||||| ||||||| || ||||| Sbjct: 193 acctttatgcggaggctcaccagcgtctttggtggcgctgctaagccaccaaaaggcggg 252 Query: 307 aacccagactcgaacacgctcatcagcgacacgacgacggtcatatgccttgatgactac 366 ||||| || || ||||| ||||||||||||||||| || || || || |||||||| ||| Sbjct: 253 aaccctgattccaacacactcatcagcgacacgaccactgtgatctgtcttgatgattac 312 Query: 367 cattccttgga 377 ||||| ||||| Sbjct: 313 cattctttgga 323 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 430 gactttgatctcatgtatgagcaagt 455 |||||||||||||||||||||||||| Sbjct: 376 gactttgatctcatgtatgagcaagt 401
>emb|BX814849.1|CNS0AAMX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS11ZB03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 992 Score = 85.7 bits (43), Expect = 2e-13 Identities = 109/131 (83%) Strand = Plus / Plus Query: 247 accttcatgcgccggctcaccagcgtgtttggaggtgctgcagagccacccaagggcggc 306 ||||| ||||| ||||||||||||| ||||| || ||||| ||||||| || ||||| Sbjct: 312 acctttatgcggaggctcaccagcgtctttggtggcgctgctaagccaccaaaaggcggg 371 Query: 307 aacccagactcgaacacgctcatcagcgacacgacgacggtcatatgccttgatgactac 366 ||||| || || ||||| ||||||||||||||||| || || || || |||||||| ||| Sbjct: 372 aaccctgattccaacacactcatcagcgacacgaccactgtgatctgtcttgatgattac 431 Query: 367 cattccttgga 377 ||||| ||||| Sbjct: 432 cattctttgga 442 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 430 gactttgatctcatgtatgagcaagt 455 |||||||||||||||||||||||||| Sbjct: 495 gactttgatctcatgtatgagcaagt 520
>gb|AC074309.4|AC074309 Arabidopsis thaliana chromosome 1 BAC T12O21 genomic sequence, complete sequence Length = 75298 Score = 85.7 bits (43), Expect = 2e-13 Identities = 109/131 (83%) Strand = Plus / Minus Query: 247 accttcatgcgccggctcaccagcgtgtttggaggtgctgcagagccacccaagggcggc 306 ||||| ||||| ||||||||||||| ||||| || ||||| ||||||| || ||||| Sbjct: 7996 acctttatgcggaggctcaccagcgtctttggtggcgctgctaagccaccaaaaggcggg 7937 Query: 307 aacccagactcgaacacgctcatcagcgacacgacgacggtcatatgccttgatgactac 366 ||||| || || ||||| ||||||||||||||||| || || || || |||||||| ||| Sbjct: 7936 aaccctgattccaacacactcatcagcgacacgaccactgtgatctgtcttgatgattac 7877 Query: 367 cattccttgga 377 ||||| ||||| Sbjct: 7876 cattctttgga 7866 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 430 gactttgatctcatgtatgagcaagt 455 |||||||||||||||||||||||||| Sbjct: 7813 gactttgatctcatgtatgagcaagt 7788
>gb|AY084576.1| Arabidopsis thaliana clone 11226 mRNA, complete sequence Length = 1517 Score = 85.7 bits (43), Expect = 2e-13 Identities = 109/131 (83%) Strand = Plus / Plus Query: 247 accttcatgcgccggctcaccagcgtgtttggaggtgctgcagagccacccaagggcggc 306 ||||| ||||| ||||||||||||| ||||| || ||||| ||||||| || ||||| Sbjct: 302 acctttatgcggaggctcaccagcgtctttggtggcgctgctaagccaccaaaaggcggg 361 Query: 307 aacccagactcgaacacgctcatcagcgacacgacgacggtcatatgccttgatgactac 366 ||||| || || ||||| ||||||||||||||||| || || || || |||||||| ||| Sbjct: 362 aaccctgattccaacacactcatcagcgacacgaccactgtgatctgtcttgatgattac 421 Query: 367 cattccttgga 377 ||||| ||||| Sbjct: 422 cattctttgga 432 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 430 gactttgatctcatgtatgagcaagt 455 |||||||||||||||||||||||||| Sbjct: 485 gactttgatctcatgtatgagcaagt 510
>gb|DQ226798.1| Boechera divaricarpa isolate SLW-B-C10 mRNA sequence Length = 517 Score = 81.8 bits (41), Expect = 2e-12 Identities = 101/121 (83%) Strand = Plus / Plus Query: 260 ggctcaccagcgtgtttggaggtgctgcagagccacccaagggcggcaacccagactcga 319 |||| |||||||| || || |||||||| ||||||| || ||||| ||||| || || | Sbjct: 14 ggcttaccagcgtcttcggtggtgctgccaagccaccaaaaggcgggaaccctgattcca 73 Query: 320 acacgctcatcagcgacacgacgacggtcatatgccttgatgactaccattccttggaca 379 |||| ||||||||||||||||| || || || || ||||| || |||||||||||||||| Sbjct: 74 acacactcatcagcgacacgaccaccgtgatctgtcttgacgattaccattccttggaca 133 Query: 380 g 380 | Sbjct: 134 g 134 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 430 gactttgatctcatgtatgagcaagt 455 |||||||||||||||||||||||||| Sbjct: 184 gactttgatctcatgtatgagcaagt 209
>gb|AF173671.1|AF173671 Beta vulgaris clone PRKRTUNI phosphoribulokinase (Prk) mRNA, partial cds Length = 814 Score = 77.8 bits (39), Expect = 4e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 535 atccagccccccaagatcttcgtcatcgagggtttgcacccaatgtatgacgaacgtgt 593 ||||||||||| |||||||| ||||||||||| |||||||| |||||||||| |||||| Sbjct: 300 atccagcccccgaagatcttggtcatcgagggcttgcaccccatgtatgacgcacgtgt 358 Score = 48.1 bits (24), Expect = 0.033 Identities = 39/44 (88%) Strand = Plus / Plus Query: 271 gtgtttggaggtgctgcagagccacccaagggcggcaacccaga 314 |||||||||||||| ||||| ||||| ||||| || |||||||| Sbjct: 36 gtgtttggaggtgcagcagaaccaccaaagggaggaaacccaga 79
>emb|Y11248.1|PSPHOBKIN P.sativum mRNA for phosphoribulokinase, partial Length = 1313 Score = 75.8 bits (38), Expect = 1e-10 Identities = 146/182 (80%) Strand = Plus / Plus Query: 274 tttggaggtgctgcagagccacccaagggcggcaacccagactcgaacacgctcatcagc 333 |||||||| || ||||||||||| || || || || || || || ||||| || ||||| Sbjct: 89 tttggaggagcagcagagccaccaaaaggtggtaatcctgattctaacacacttatcagt 148 Query: 334 gacacgacgacggtcatatgccttgatgactaccattccttggacagaaccgggaggaag 393 ||||| || || |||||||| | ||||| || ||||| ||||| |||||||| || || Sbjct: 149 gacacaacaactgtcatatgtttggatgattatcattctttggatagaaccggtagaaaa 208 Query: 394 gagaaaggtgtgactgccctggaccccaaggcaaacgactttgatctcatgtatgagcaa 453 ||||||||||| ||||| || || || || || || || ||||||||||||||||| ||| Sbjct: 209 gagaaaggtgttactgcacttgatccaaaagctaatgattttgatctcatgtatgaacaa 268 Query: 454 gt 455 || Sbjct: 269 gt 270
>gb|DQ226963.1| Boechera divaricarpa isolate AD-E7 mRNA sequence Length = 599 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 325 ctcatcagcgacacgacgacggtcatatgccttgatgactaccattccttggacag 380 ||||||||||||||||| || || || || ||||| || ||||||||||||||||| Sbjct: 4 ctcatcagcgacacgaccaccgtgatctgtcttgacgattaccattccttggacag 59 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 430 gactttgatctcatgtatgagcaagt 455 |||||||||||||||||||||||||| Sbjct: 109 gactttgatctcatgtatgagcaagt 134
>gb|AY772250.1| Euglena gracilis chloroplast phosphoribulokinase (PRK) mRNA, complete cds; nuclear gene for chloroplast product Length = 1479 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 226 gactcgggatgtgggaaatccaccttcatgcgccggctcac 266 ||||| ||||||||||| |||||||||||||| || ||||| Sbjct: 361 gactcaggatgtgggaagtccaccttcatgcggcgtctcac 401
>gb|AC147049.2| Pan troglodytes BAC clone RP43-131M1 from 3, complete sequence Length = 185806 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 11 ccagaggttgggcagcaaacat 32 |||||||||||||||||||||| Sbjct: 127934 ccagaggttgggcagcaaacat 127913
>gb|AC145856.2| Pan troglodytes BAC clone RP43-5P12 from 7, complete sequence Length = 185183 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 11 ccagaggttgggcagcaaacat 32 |||||||||||||||||||||| Sbjct: 21696 ccagaggttgggcagcaaacat 21675
>gb|AC091999.4| Homo sapiens BAC clone RP11-289H19 from 7, complete sequence Length = 35481 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 11 ccagaggttgggcagcaaacat 32 |||||||||||||||||||||| Sbjct: 11745 ccagaggttgggcagcaaacat 11766
>gb|DQ118593.1| Karlodinium micrum isolate 7629 chloroplast phosphoribulokinase mRNA, complete cds; nuclear gene for chloroplast product Length = 1546 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 487 aagccaatctacaaccacgtcactgg 512 ||||||||||||||||||| |||||| Sbjct: 655 aagccaatctacaaccacgacactgg 680
>gb|AC157560.3| Mus musculus chromosome 15, clone RP24-270I3, complete sequence Length = 157844 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 cccacacaccaccacatccct 65 ||||||||||||||||||||| Sbjct: 118087 cccacacaccaccacatccct 118107
>emb|AL034554.8|HS994L9 Human DNA sequence from clone RP5-994L9 on chromosome 20p12.3-13 Contains STS and GSSs, complete sequence Length = 137739 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 99 cttcaggcagaaccaagtcatcctc 123 ||||| ||||||||||||||||||| Sbjct: 109984 cttcaagcagaaccaagtcatcctc 109960
>gb|AY267695.1| Bigelowiella natans phosphoribulokinase mRNA, complete cds; nuclear gene for plastid product Length = 1609 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 485 agaagccaatctacaaccacg 505 ||||||||||||||||||||| Sbjct: 683 agaagccaatctacaaccacg 703
>gb|AY772253.1| Bigelowiella natans chloroplast phosphoribulokinase (PRK) gene, partial cds; nuclear gene for chloroplast product Length = 1786 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 485 agaagccaatctacaaccacg 505 ||||||||||||||||||||| Sbjct: 999 agaagccaatctacaaccacg 1019
>gb|AY826861.1| Isochrysis galbana clone ISPRK1 chloroplast phosphoribulokinase mRNA, partial cds; nuclear gene for chloroplast product Length = 1432 Score = 42.1 bits (21), Expect = 2.1 Identities = 45/53 (84%) Strand = Plus / Plus Query: 208 gtgattggcctggcagcagactcgggatgtgggaaatccaccttcatgcgccg 260 ||||| || ||||| || |||||||| || || || ||||||||||||||||| Sbjct: 89 gtgatcggtctggcggcggactcgggctgcggcaagtccaccttcatgcgccg 141
>emb|Y08610.2|OSPRK Odontella sinensis mRNA for phosphoribulokinase (prk gene) Length = 1258 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 484 gagaagccaatctacaaccacgtca 508 |||||||| |||||||||||||||| Sbjct: 467 gagaagcccatctacaaccacgtca 491 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 244 tccaccttcatgcgccggctcacc 267 ||||||||||||||||| |||||| Sbjct: 212 tccaccttcatgcgccgcctcacc 235
>gb|BC086910.1| Mus musculus secretoglobin, family 3A, member 1, transcript variant A, mRNA (cDNA clone MGC:107611 IMAGE:6759656), complete cds Length = 508 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 gaggaaggagaaaggtgtga 406 |||||||||||||||||||| Sbjct: 461 gaggaaggagaaaggtgtga 442
>gb|AF233439.7| Homo sapiens chromosome 8 clones GS1-24F4, CTD-2629I16 map p23.1, complete sequences Length = 231283 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 gaggaaggagaaaggtgtga 406 |||||||||||||||||||| Sbjct: 78568 gaggaaggagaaaggtgtga 78587
>gb|AF205406.5| Homo sapiens chromosome 8 clone SCb-633e22 map p23.1, complete sequence Length = 168907 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 gaggaaggagaaaggtgtga 406 |||||||||||||||||||| Sbjct: 31267 gaggaaggagaaaggtgtga 31286
>gb|AF298854.5| Homo sapiens chromosome 8 clone SCb-207i3 map p23.1, complete sequence Length = 110283 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 gaggaaggagaaaggtgtga 406 |||||||||||||||||||| Sbjct: 41295 gaggaaggagaaaggtgtga 41314
>emb|X14112.1|HE1CG Human herpesvirus 1 complete genome Length = 152261 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 501 ccacgtcactggcctcctcg 520 |||||||||||||||||||| Sbjct: 92292 ccacgtcactggcctcctcg 92311
>gb|AC121932.2| Mus musculus BAC clone RP24-205N24 from 17, complete sequence Length = 152782 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 aggaaggagaaaggtgtgac 407 |||||||||||||||||||| Sbjct: 62792 aggaaggagaaaggtgtgac 62811
>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence Length = 3281944 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 451 caagtgaaggcaatcaaagaaggc 474 |||||||||||||| ||||||||| Sbjct: 1633029 caagtgaaggcaattaaagaaggc 1633052
>gb|DQ400445.1| Ictalurus punctatus immunoglobulin heavy chain gene locus, partial sequence and unknown gene Length = 257153 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 aagcagcaggaggagtacca 154 |||||||||||||||||||| Sbjct: 42522 aagcagcaggaggagtacca 42503
>emb|X82631.1|CPIIPHA2 C.porcellus mRNA for typeII phospholipase A2 Length = 760 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 accagaagcagcaggaggag 149 |||||||||||||||||||| Sbjct: 79 accagaagcagcaggaggag 60
>gb|AC164171.5| Mus musculus 10 BAC RP24-574G7 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 147660 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 cagcccacacaccaccacat 61 |||||||||||||||||||| Sbjct: 63745 cagcccacacaccaccacat 63726
>emb|AL606479.16| Mouse DNA sequence from clone RP23-10G21 on chromosome 11 Contains the Scgb3a1 gene for family 3A member 1 secretoglobin, gene A230103N10Rik, a ribosomal protein L30 (Rpl30) pseudogene, a ribosomal protein S10 (Rps10) pseudogene, a ribosomal protein L29 (Rpl29) pseudogene, the Gfpt2 gene for glutamine fructose-6-phosphate transaminase 2, the Mapk9 gene for mitogen activated protein kinase 9, the 5' end of gene 9130006A14Rik and four CpG islands, complete sequence Length = 254981 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 gaggaaggagaaaggtgtga 406 |||||||||||||||||||| Sbjct: 4264 gaggaaggagaaaggtgtga 4245
>emb|AJ720375.1| Gallus gallus mRNA for hypothetical protein, clone 16f17 Length = 4963 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 aggagtaccacgaggcatgg 164 |||||||||||||||||||| Sbjct: 773 aggagtaccacgaggcatgg 754
>gb|AC079018.10| Homo sapiens chromosome 8, clone RP11-161B1, complete sequence Length = 168702 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 gaggaaggagaaaggtgtga 406 |||||||||||||||||||| Sbjct: 12621 gaggaaggagaaaggtgtga 12640
>dbj|AK127831.1| Homo sapiens cDNA FLJ45934 fis, clone PLACE7003684 Length = 3658 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 gaggaaggagaaaggtgtga 406 |||||||||||||||||||| Sbjct: 3560 gaggaaggagaaaggtgtga 3579
>gb|AY772251.1| Chondrus crispus chloroplast phosphoribulokinase (PRK) mRNA, complete cds; nuclear gene for chloroplast product Length = 1427 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 554 tcgtcatcgagggtttgcacccaatgtatgac 585 ||||||||||||| ||||||| ||||||||| Sbjct: 490 tcgtcatcgagggcctgcaccccatgtatgac 521
>dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, complete sequence Length = 3354505 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 451 caagtgaaggcaatcaaagaaggc 474 |||||||||||||| ||||||||| Sbjct: 2795236 caagtgaaggcaattaaagaaggc 2795213
>dbj|AK134202.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830472K17 product:hypothetical protein, full insert sequence Length = 2783 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 caatagtgattggcctggca 222 |||||||||||||||||||| Sbjct: 892 caatagtgattggcctggca 873
>gb|AC068721.4| Homo sapiens BAC clone RP11-545L5 from 4, complete sequence Length = 177270 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 cagaagcagcaggaggagta 151 |||||||||||||||||||| Sbjct: 137439 cagaagcagcaggaggagta 137458
>gb|AC153823.5| Mus musculus 10 BAC RP23-11M21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 210101 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 ccaagtcatcctcttcacaa 130 |||||||||||||||||||| Sbjct: 79373 ccaagtcatcctcttcacaa 79392
>emb|BX930986.2| Gallus gallus finished cDNA, clone ChEST68e2 Length = 3166 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 aggagtaccacgaggcatgg 164 |||||||||||||||||||| Sbjct: 737 aggagtaccacgaggcatgg 718
>dbj|AK003988.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110030K16 product:uteroglobin related protein 2, full insert sequence Length = 495 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 gaggaaggagaaaggtgtga 406 |||||||||||||||||||| Sbjct: 466 gaggaaggagaaaggtgtga 447
>gb|AC021849.5| Homo sapiens BAC clone RP11-366G5 from 2, complete sequence Length = 168710 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 456 gaaggcaatcaaagaaggcaaggctattgaga 487 ||||||||| || |||||||||||| |||||| Sbjct: 12251 gaaggcaatgaaggaaggcaaggcttttgaga 12220
>emb|Z72338.1|HSV1KOS Herpes simplex virus type 1 (strain KOS) UL41 gene Length = 1622 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 ccacgtcactggcctcctcg 520 |||||||||||||||||||| Sbjct: 394 ccacgtcactggcctcctcg 375
>gb|AF313457.1| Mus musculus UGRP2 type B mRNA, complete cds Length = 630 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 gaggaaggagaaaggtgtga 406 |||||||||||||||||||| Sbjct: 569 gaggaaggagaaaggtgtga 550
>gb|AF313456.1| Mus musculus UGRP2 type A mRNA, complete cds Length = 525 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 gaggaaggagaaaggtgtga 406 |||||||||||||||||||| Sbjct: 464 gaggaaggagaaaggtgtga 445
>gb|AC116680.21| Mus musculus chromosome 12, clone RP23-476M16, complete sequence Length = 215303 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 caatagtgattggcctggca 222 |||||||||||||||||||| Sbjct: 45836 caatagtgattggcctggca 45817
>gb|AF007815.1|AF007815 Human herpesvirus 1 strain KOS virion host shutoff protein (UL41) gene, complete cds Length = 2172 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 ccacgtcactggcctcctcg 520 |||||||||||||||||||| Sbjct: 440 ccacgtcactggcctcctcg 421
>emb|CT010478.15| Mouse DNA sequence from clone RP23-356E7 on chromosome 12, complete sequence Length = 190917 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 caatagtgattggcctggca 222 |||||||||||||||||||| Sbjct: 74482 caatagtgattggcctggca 74463
>gb|AC161463.3| Gallus gallus BAC clone CH261-127J9 from chromosome ul, complete sequence Length = 213261 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 cgctccagaggttgggcagc 26 |||||||||||||||||||| Sbjct: 154845 cgctccagaggttgggcagc 154826
>ref|NM_054037.1| Mus musculus secretoglobin, family 3A, member 1 (Scgb3a1), transcript variant A, mRNA Length = 525 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 gaggaaggagaaaggtgtga 406 |||||||||||||||||||| Sbjct: 464 gaggaaggagaaaggtgtga 445
>ref|NM_170727.1| Mus musculus secretoglobin, family 3A, member 1 (Scgb3a1), transcript variant B, mRNA Length = 630 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 gaggaaggagaaaggtgtga 406 |||||||||||||||||||| Sbjct: 569 gaggaaggagaaaggtgtga 550
>dbj|AB009267.1| Human herpesvirus 1 UL41 gene for tegument protein, complete cds, strain:VR-3 Length = 1470 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 ccacgtcactggcctcctcg 520 |||||||||||||||||||| Sbjct: 346 ccacgtcactggcctcctcg 327 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,097,790 Number of Sequences: 3902068 Number of extensions: 5097790 Number of successful extensions: 113243 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 112984 Number of HSP's gapped (non-prelim): 257 length of query: 599 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 576 effective length of database: 17,143,297,704 effective search space: 9874539477504 effective search space used: 9874539477504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
