ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal20b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ST7R_ARATH (Q9LDU6) 7-dehydrocholesterol reductase (EC 1.3.1.21)... 50 3e-06
2PLIGA_ELAQU (Q9PWI4) Phospholipase A2 inhibitor gamma subunit A ... 29 9.6
3ATG19_YEAST (P35193) Autophagy-related protein 19 (Cytoplasm-to-... 29 9.6

>ST7R_ARATH (Q9LDU6) 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC|
           reductase) (Sterol delta-7-reductase) (Dwarf5 protein)
          Length = 432

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 22/40 (55%), Positives = 23/40 (57%)
 Frame = +3

Query: 51  PGKRFEGPISPSGNVPVYKANGXXXXXXXXXXXXXXWW*G 170
           PGKR EGPISP+GN PVYKANG              WW G
Sbjct: 85  PGKRVEGPISPAGNRPVYKANGLAAYFVTLATYLGLWWFG 124



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>PLIGA_ELAQU (Q9PWI4) Phospholipase A2 inhibitor gamma subunit A precursor|
           (PLI-gamma A)
          Length = 202

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -1

Query: 362 PMSKTSSHHNCFSS*RCQ-KHQMANASAHK*TSHSIVQGRNH-QNDKRCSSK 213
           P+S  SSH NCFSS  C+ +H   N         + ++GR H  ++K+C  +
Sbjct: 58  PLSIRSSHRNCFSSSLCKLEHFDVNTG-----QETYLRGRIHCCDEKKCEGR 104



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>ATG19_YEAST (P35193) Autophagy-related protein 19 (Cytoplasm-to-vacuole|
           targeting protein 19)
          Length = 415

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 251 LEQLNDLSTCVHLHW-PFDVSGSAMRKNNYD 340
           L  LND + C HL W P D S   +  NNYD
Sbjct: 46  LSLLNDSNGCKHLFWQPNDKSNVRILLNNYD 76


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,672,622
Number of Sequences: 219361
Number of extensions: 1369296
Number of successful extensions: 2531
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2531
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4258037034
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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