ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal20a24 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X60158.1|HVPSAG H.vulgare PsaG mRNA Length = 724 Score = 728 bits (367), Expect = 0.0 Identities = 377/381 (98%) Strand = Plus / Plus Query: 2 ggcgcggcggtccgtggcggcgcgggccgcgctggagccgtcggtggtgatcagcctcag 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 236 ggcgcggcggtccgtggcggcgcgggccgcgctggagccgtcggtggtgatcagcctcag 295 Query: 62 cacggggctgtcgctcgtgatgggccgcttcgtcttcttcaacttccagcgggagaacgt 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 296 cacggggctgtcgctcgtgatgggccgcttcgtcttcttcaacttccagcgggagaacgt 355 Query: 122 ggcgaagcaggtccccgagcagaacggcaagacccacttcgaggccggcgacgagcgcgc 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 356 ggcgaagcaggtccccgagcagaacggcaagacccacttcgaggccggcgacgagcgcgc 415 Query: 182 caaggagttcgccgggatcctcaagtccaacgaccccgtcggcttcaacctcgtcnacgt 241 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 416 caaggagttcgccgggatcctcaagtccaacgaccccgtcggcttcaacctcgtcgacgt 475 Query: 242 cctcgcatggggctccatcggccacatcgtcgcctactacatcctcgccaccaccagcaa 301 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 476 cctagcatggggctccatcggccacatcgtcgcctactacatcctcgccaccaccagcaa 535 Query: 302 cggatacgaccctcccttcttcggctgatccgtccgtctcccctgcctgcctgcgtgccg 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 536 cggatacgaccctcccttcttcggctgatccgtccgtctcccctgcctgcctgcgtgccg 595 Query: 362 gccggagcggctttgntgttg 382 |||||| |||||||| ||||| Sbjct: 596 gccggatcggctttgctgttg 616
>gb|AY110144.1| Zea mays CL7431_1 mRNA sequence Length = 1515 Score = 367 bits (185), Expect = 2e-98 Identities = 247/268 (92%) Strand = Plus / Minus Query: 46 tggtgatcagcctcagcacggggctgtcgctcgtgatgggccgcttcgtcttcttcaact 105 ||||||||||||| |||||||| |||||||| | |||||||||||||||||||||||| Sbjct: 431 tggtgatcagcctgagcacgggcgtgtcgctcttcctgggccgcttcgtcttcttcaact 372 Query: 106 tccagcgggagaacgtggcgaagcaggtccccgagcagaacggcaagacccacttcgagg 165 |||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||| | Sbjct: 371 tccagcgggagaacgtggcgaagcaggtgcccgcgcagaacggcaagacgcacttcgacg 312 Query: 166 ccggcgacgagcgcgccaaggagttcgccgggatcctcaagtccaacgaccccgtcggct 225 |||||||||||||||||||||||||||| | | |||||||||||||||||||| |||| Sbjct: 311 ccggcgacgagcgcgccaaggagttcgcggccctgctcaagtccaacgaccccgtgggct 252 Query: 226 tcaacctcgtcnacgtcctcgcatggggctccatcggccacatcgtcgcctactacatcc 285 ||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct: 251 tcaacctcgtcgacgtcctcgcctggggctcgctcggccacatcgtcgcctactacatcc 192 Query: 286 tcgccaccaccagcaacggatacgaccc 313 |||||||| ||||||||||||||||||| Sbjct: 191 tcgccacctccagcaacggatacgaccc 164
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 319 bits (161), Expect = 4e-84 Identities = 208/224 (92%) Strand = Plus / Plus Query: 90 ttcgtcttcttcaacttccagcgggagaacgtggcgaagcaggtccccgagcagaacggc 149 ||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 18415335 ttcgtgttcttcaacttccagcgggagaacgtggcgaagcaggtgccggagcagaacggc 18415394 Query: 150 aagacccacttcgaggccggcgacgagcgcgccaaggagttcgccgggatcctcaagtcc 209 ||||| |||||||| |||||||||||||||||||||||||||||||| | ||| |||| Sbjct: 18415395 aagacgcacttcgacgccggcgacgagcgcgccaaggagttcgccggcctgctccggtcc 18415454 Query: 210 aacgaccccgtcggcttcaacctcgtcnacgtcctcgcatggggctccatcggccacatc 269 ||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||| Sbjct: 18415455 aacgaccccgtcggcttcaacctcgtcgacgtcctcgcctggggctccctcggccacatc 18415514 Query: 270 gtcgcctactacatcctcgccaccaccagcaacggatacgaccc 313 |||||||||||||||||||||||| ||||||||||||| |||| Sbjct: 18415515 gtcgcctactacatcctcgccacctgcagcaacggatacaaccc 18415558
>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0463G11 Length = 154188 Score = 319 bits (161), Expect = 4e-84 Identities = 208/224 (92%) Strand = Plus / Plus Query: 90 ttcgtcttcttcaacttccagcgggagaacgtggcgaagcaggtccccgagcagaacggc 149 ||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 130071 ttcgtgttcttcaacttccagcgggagaacgtggcgaagcaggtgccggagcagaacggc 130130 Query: 150 aagacccacttcgaggccggcgacgagcgcgccaaggagttcgccgggatcctcaagtcc 209 ||||| |||||||| |||||||||||||||||||||||||||||||| | ||| |||| Sbjct: 130131 aagacgcacttcgacgccggcgacgagcgcgccaaggagttcgccggcctgctccggtcc 130190 Query: 210 aacgaccccgtcggcttcaacctcgtcnacgtcctcgcatggggctccatcggccacatc 269 ||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||| Sbjct: 130191 aacgaccccgtcggcttcaacctcgtcgacgtcctcgcctggggctccctcggccacatc 130250 Query: 270 gtcgcctactacatcctcgccaccaccagcaacggatacgaccc 313 |||||||||||||||||||||||| ||||||||||||| |||| Sbjct: 130251 gtcgcctactacatcctcgccacctgcagcaacggatacaaccc 130294
>dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0463D04 Length = 145828 Score = 319 bits (161), Expect = 4e-84 Identities = 208/224 (92%) Strand = Plus / Plus Query: 90 ttcgtcttcttcaacttccagcgggagaacgtggcgaagcaggtccccgagcagaacggc 149 ||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 77209 ttcgtgttcttcaacttccagcgggagaacgtggcgaagcaggtgccggagcagaacggc 77268 Query: 150 aagacccacttcgaggccggcgacgagcgcgccaaggagttcgccgggatcctcaagtcc 209 ||||| |||||||| |||||||||||||||||||||||||||||||| | ||| |||| Sbjct: 77269 aagacgcacttcgacgccggcgacgagcgcgccaaggagttcgccggcctgctccggtcc 77328 Query: 210 aacgaccccgtcggcttcaacctcgtcnacgtcctcgcatggggctccatcggccacatc 269 ||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||| Sbjct: 77329 aacgaccccgtcggcttcaacctcgtcgacgtcctcgcctggggctccctcggccacatc 77388 Query: 270 gtcgcctactacatcctcgccaccaccagcaacggatacgaccc 313 |||||||||||||||||||||||| ||||||||||||| |||| Sbjct: 77389 gtcgcctactacatcctcgccacctgcagcaacggatacaaccc 77432
>dbj|AK098847.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000C21, full insert sequence Length = 671 Score = 319 bits (161), Expect = 4e-84 Identities = 208/224 (92%) Strand = Plus / Plus Query: 90 ttcgtcttcttcaacttccagcgggagaacgtggcgaagcaggtccccgagcagaacggc 149 ||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 260 ttcgtgttcttcaacttccagcgggagaacgtggcgaagcaggtgccggagcagaacggc 319 Query: 150 aagacccacttcgaggccggcgacgagcgcgccaaggagttcgccgggatcctcaagtcc 209 ||||| |||||||| |||||||||||||||||||||||||||||||| | ||| |||| Sbjct: 320 aagacgcacttcgacgccggcgacgagcgcgccaaggagttcgccggcctgctccggtcc 379 Query: 210 aacgaccccgtcggcttcaacctcgtcnacgtcctcgcatggggctccatcggccacatc 269 ||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||| Sbjct: 380 aacgaccccgtcggcttcaacctcgtcgacgtcctcgcctggggctccctcggccacatc 439 Query: 270 gtcgcctactacatcctcgccaccaccagcaacggatacgaccc 313 |||||||||||||||||||||||| ||||||||||||| |||| Sbjct: 440 gtcgcctactacatcctcgccacctacagcaacggatacaaccc 483
>dbj|AK061695.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-C08, full insert sequence Length = 636 Score = 319 bits (161), Expect = 4e-84 Identities = 208/224 (92%) Strand = Plus / Plus Query: 90 ttcgtcttcttcaacttccagcgggagaacgtggcgaagcaggtccccgagcagaacggc 149 ||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct: 256 ttcgtgttcttcaacttccagcgggagaacgtggcgaagcaggtgccggagcagaacggc 315 Query: 150 aagacccacttcgaggccggcgacgagcgcgccaaggagttcgccgggatcctcaagtcc 209 ||||| |||||||| |||||||||||||||||||||||||||||||| | ||| |||| Sbjct: 316 aagacgcacttcgacgccggcgacgagcgcgccaaggagttcgccggcctgctccggtcc 375 Query: 210 aacgaccccgtcggcttcaacctcgtcnacgtcctcgcatggggctccatcggccacatc 269 ||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||| Sbjct: 376 aacgaccccgtcggcttcaacctcgtcgacgtcctcgcctggggctccctcggccacatc 435 Query: 270 gtcgcctactacatcctcgccaccaccagcaacggatacgaccc 313 |||||||||||||||||||||||| ||||||||||||| |||| Sbjct: 436 gtcgcctactacatcctcgccacctgcagcaacggatacaaccc 479
>emb|AJ417528.1|OSA417528 Oryza sativa partial mRNA for putative photosystem I chain V precursor (xd17 gene) Length = 578 Score = 287 bits (145), Expect = 1e-74 Identities = 189/204 (92%) Strand = Plus / Plus Query: 110 gcgggagaacgtggcgaagcaggtccccgagcagaacggcaagacccacttcgaggccgg 169 |||||||||||||||||||||||| || ||||||||||||||||| |||||||| ||||| Sbjct: 10 gcgggagaacgtggcgaagcaggtgccggagcagaacggcaagacgcacttcgacgccgg 69 Query: 170 cgacgagcgcgccaaggagttcgccgggatcctcaagtccaacgaccccgtcggcttcaa 229 ||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||| Sbjct: 70 cgacgagcgcgccaaggagttcgccggcctgctccggtccaacgaccccgtcggcttcaa 129 Query: 230 cctcgtcnacgtcctcgcatggggctccatcggccacatcgtcgcctactacatcctcgc 289 ||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct: 130 cctcgtcgacgtcctcgcctggggctccctcggccacatcgtcgcctactacatcctcgc 189 Query: 290 caccaccagcaacggatacgaccc 313 |||| ||||||||||||| |||| Sbjct: 190 cacctgcagcaacggatacaaccc 213
>ref|NM_104443.2| Arabidopsis thaliana unknown protein AT1G55670 mRNA, complete cds Length = 780 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 84 ggccgcttcgtcttcttcaacttccagcgggagaacgt 121 ||||| ||||||||||||||||||||| | |||||||| Sbjct: 328 ggccgtttcgtcttcttcaacttccagagagagaacgt 365
>gb|AF339692.1| Arabidopsis thaliana putative photosystem I subunit V precursor (At1g55670) mRNA, complete cds Length = 533 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 84 ggccgcttcgtcttcttcaacttccagcgggagaacgt 121 ||||| ||||||||||||||||||||| | |||||||| Sbjct: 235 ggccgtttcgtcttcttcaacttccagagagagaacgt 272
>gb|AF326870.1| Arabidopsis thaliana putative photosystem I subunit V precursor (At1g55670) mRNA, complete cds Length = 786 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 84 ggccgcttcgtcttcttcaacttccagcgggagaacgt 121 ||||| ||||||||||||||||||||| | |||||||| Sbjct: 328 ggccgtttcgtcttcttcaacttccagagagagaacgt 365
>gb|AY050463.1| Arabidopsis thaliana At1g55670/F20N2_3 mRNA, complete cds Length = 483 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 84 ggccgcttcgtcttcttcaacttccagcgggagaacgt 121 ||||| ||||||||||||||||||||| | |||||||| Sbjct: 235 ggccgtttcgtcttcttcaacttccagagagagaacgt 272
>gb|AF324710.2|AF324710 Arabidopsis thaliana At1g55670 (At1g55670/F20N2_3) mRNA, complete cds Length = 750 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 84 ggccgcttcgtcttcttcaacttccagcgggagaacgt 121 ||||| ||||||||||||||||||||| | |||||||| Sbjct: 328 ggccgtttcgtcttcttcaacttccagagagagaacgt 365
>gb|AF378859.1|AF378859 Arabidopsis thaliana At1g55670/F20N2_3 mRNA, complete cds Length = 737 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 84 ggccgcttcgtcttcttcaacttccagcgggagaacgt 121 ||||| ||||||||||||||||||||| | |||||||| Sbjct: 330 ggccgtttcgtcttcttcaacttccagagagagaacgt 367
>gb|AC002328.2|AC002328 Genomic sequence for Arabidopsis thaliana BAC F20N2 from chromosome I, complete sequence Length = 109171 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Minus Query: 84 ggccgcttcgtcttcttcaacttccagcgggagaacgt 121 ||||| ||||||||||||||||||||| | |||||||| Sbjct: 41261 ggccgtttcgtcttcttcaacttccagagagagaacgt 41224
>emb|AJ245630.1|ATH245630 Arabidopsis thaliana mRNA for photosystem I subunit V precursor (psaG gene) Length = 654 Score = 52.0 bits (26), Expect = 0.001 Identities = 35/38 (92%) Strand = Plus / Plus Query: 84 ggccgcttcgtcttcttcaacttccagcgggagaacgt 121 ||||| ||||||||||||||||||||| | |||||||| Sbjct: 306 ggccgtttcgtcttcttcaacttccagagagagaacgt 343
>gb|DQ226794.1| Boechera divaricarpa isolate SLW-B-C03 mRNA sequence Length = 560 Score = 50.1 bits (25), Expect = 0.005 Identities = 69/83 (83%), Gaps = 3/83 (3%) Strand = Plus / Plus Query: 84 ggccgcttcgtcttcttcaacttccagcgggagaacgtggcgaagcagg---tccccgag 140 ||||| ||||| ||||||||||||||| | |||||||| || || |||| | || ||| Sbjct: 161 ggccgtttcgttttcttcaacttccagagagagaacgttgcaaaacagggcttaccggag 220 Query: 141 cagaacggcaagacccacttcga 163 |||||||| || ||||||||||| Sbjct: 221 cagaacgggaaaacccacttcga 243
>dbj|AP004898.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT01P23, TM0047b, complete sequence Length = 69411 Score = 50.1 bits (25), Expect = 0.005 Identities = 28/29 (96%) Strand = Plus / Minus Query: 96 ttcttcaacttccagcgggagaacgtggc 124 ||||||||||||||| ||||||||||||| Sbjct: 40902 ttcttcaacttccagagggagaacgtggc 40874
>gb|AY724779.1| Camellia sinensis chloroplast photosystem I reaction center V mRNA, partial cds; nuclear gene for chloroplast product Length = 612 Score = 46.1 bits (23), Expect = 0.083 Identities = 67/82 (81%) Strand = Plus / Plus Query: 199 tcctcaagtccaacgaccccgtcggcttcaacctcgtcnacgtcctcgcatggggctcca 258 ||||||| ||||||||||| || || |||||| ||||| | ||| | || ||||| |||| Sbjct: 308 tcctcaaatccaacgacccagttgggttcaacatcgtcgatgtcttggcttggggttcca 367 Query: 259 tcggccacatcgtcgcctacta 280 | || |||||||| || ||||| Sbjct: 368 ttggacacatcgttgcttacta 389
>ref|XM_449258.1| Candida glabrata CBS138, CAGL0L11264g partial mRNA Length = 3054 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 88 gcttcgtcttcttcaacttcca 109 |||||||||||||||||||||| Sbjct: 1226 gcttcgtcttcttcaacttcca 1205
>emb|CR380958.1| Candida glabrata strain CBS138 chromosome L complete sequence Length = 1440588 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 88 gcttcgtcttcttcaacttcca 109 |||||||||||||||||||||| Sbjct: 1199938 gcttcgtcttcttcaacttcca 1199959
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 119 cgtggcgaagcaggtccccgag 140 |||||||||||||||||||||| Sbjct: 19801 cgtggcgaagcaggtccccgag 19822
>ref|XM_308480.2| Anopheles gambiae str. PEST ENSANGP00000017857 (ENSANGG00000015368), partial mRNA Length = 1827 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 29 cgcgctggagccgtcggtggtg 50 |||||||||||||||||||||| Sbjct: 1591 cgcgctggagccgtcggtggtg 1612
>gb|AY541063.1| Nocardia uniformis subsp. tsuyamanensis monocyclic beta-lactam antibiotic nocardicin A biosynthesis gene cluster, partial sequence Length = 33451 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 14 cgtggcggcgcgggccgcgctggag 38 ||||||||||||||| ||||||||| Sbjct: 3645 cgtggcggcgcgggcggcgctggag 3669
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 334 tccgtctcccctgcctgcctgcgtgccggccgg 366 ||||||||||| |||| ||||||||| |||||| Sbjct: 4395669 tccgtctccccagccttcctgcgtgcaggccgg 4395701
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 ttcgtcttcttcaacttccag 110 ||||||||||||||||||||| Sbjct: 4318570 ttcgtcttcttcaacttccag 4318550
>gb|AC126471.4| Homo sapiens 12 BAC RP11-629O19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 199945 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 89 cttcgtcttcttcaacttcca 109 ||||||||||||||||||||| Sbjct: 20668 cttcgtcttcttcaacttcca 20648
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 gggcgcggcggtccgtggcgg 21 ||||||||||||||||||||| Sbjct: 3140795 gggcgcggcggtccgtggcgg 3140815
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 ttcgtcttcttcaacttccag 110 ||||||||||||||||||||| Sbjct: 4263363 ttcgtcttcttcaacttccag 4263343
>gb|AC123528.2| Oryza sativa chromosome 11 clone OSJNBa0078E03, complete sequence Length = 149493 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 cggcgacgagcgcgccaagg 186 |||||||||||||||||||| Sbjct: 137917 cggcgacgagcgcgccaagg 137936
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 cgaggccggcgacgagcgcg 180 |||||||||||||||||||| Sbjct: 2181917 cgaggccggcgacgagcgcg 2181898
>gb|AC146521.2| Oryza sativa chromosome 3 B1246D11 genomic sequence, complete sequence Length = 43277 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 343 cctgcctgcctgcgtgccggccgg 366 ||||||||||||| |||||||||| Sbjct: 10878 cctgcctgcctgcctgccggccgg 10855
>gb|AC146915.2| Oryza sativa chromosome 3 B1166C06 genomic sequence, complete sequence Length = 36086 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 343 cctgcctgcctgcgtgccggccgg 366 ||||||||||||| |||||||||| Sbjct: 35266 cctgcctgcctgcctgccggccgg 35243
>ref|XM_322829.1| Neurospora crassa OR74A hypothetical protein (NCU03572.1) partial mRNA Length = 1938 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 ccaacgaccccgtcggcttc 227 |||||||||||||||||||| Sbjct: 1475 ccaacgaccccgtcggcttc 1494
>ref|XM_950918.1| Neurospora crassa OR74A hypothetical protein (NCU03572.1) partial mRNA Length = 1938 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 ccaacgaccccgtcggcttc 227 |||||||||||||||||||| Sbjct: 1475 ccaacgaccccgtcggcttc 1494
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 cggcgcgggccgcgctggag 38 |||||||||||||||||||| Sbjct: 1560284 cggcgcgggccgcgctggag 1560303
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 acatcctcgccaccaccagc 299 |||||||||||||||||||| Sbjct: 30419252 acatcctcgccaccaccagc 30419271 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 343 cctgcctgcctgcgtgccggccgg 366 ||||||||||||| |||||||||| Sbjct: 15176189 cctgcctgcctgcctgccggccgg 15176212
>ref|XM_751003.1| Aspergillus fumigatus Af293 hypothetical protein (Afu2g17610) partial mRNA Length = 2667 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 tccccgagcagaacggcaag 152 |||||||||||||||||||| Sbjct: 2339 tccccgagcagaacggcaag 2358
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 gccggcgacgagcgcgccaa 184 |||||||||||||||||||| Sbjct: 1483221 gccggcgacgagcgcgccaa 1483240
>emb|BX284746.1|NCB23I4 Neurospora crassa DNA linkage group II BAC contig B23I4 Length = 71047 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 ccaacgaccccgtcggcttc 227 |||||||||||||||||||| Sbjct: 46041 ccaacgaccccgtcggcttc 46022
>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29 Length = 311000 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 ggcgcgggccgcgctggagc 39 |||||||||||||||||||| Sbjct: 178886 ggcgcgggccgcgctggagc 178867
>gb|AC087852.11| Oryza sativa chromosome 3 BAC OJ1124_H03 genomic sequence, complete sequence Length = 149380 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 acatcctcgccaccaccagc 299 |||||||||||||||||||| Sbjct: 57763 acatcctcgccaccaccagc 57744
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 ccgtcggcttcaacctcgtc 236 |||||||||||||||||||| Sbjct: 463433 ccgtcggcttcaacctcgtc 463414
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 266 catcgtcgcctactacatcctcgccacc 293 |||| ||||||||||| ||||||||||| Sbjct: 669538 catcttcgcctactacttcctcgccacc 669565
>gb|AC154419.2| Mus musculus BAC clone RP24-212C1 from chromosome 14, complete sequence Length = 167114 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 343 cctgcctgcctgcgtgccggccgg 366 ||||||||||||| |||||||||| Sbjct: 61509 cctgcctgcctgcctgccggccgg 61486
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 cggcgacgagcgcgccaagg 186 |||||||||||||||||||| Sbjct: 1773746 cggcgacgagcgcgccaagg 1773765
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 acatcctcgccaccaccagc 299 |||||||||||||||||||| Sbjct: 30510674 acatcctcgccaccaccagc 30510693 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 343 cctgcctgcctgcgtgccggccgg 366 ||||||||||||| |||||||||| Sbjct: 15170723 cctgcctgcctgcctgccggccgg 15170746
>gb|M29297.1|STMTN4556 Streptomyces fradiae transposon Tn4556 transposase, resolvase, and unknown protein genes, complete cds; and unknown protein gene, partial cds Length = 6806 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 tggcggcgcgggccgcgctg 35 |||||||||||||||||||| Sbjct: 1874 tggcggcgcgggccgcgctg 1893
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 tggcggcgcgggccgcgctg 35 |||||||||||||||||||| Sbjct: 905009 tggcggcgcgggccgcgctg 904990
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 ccaccaccagcaacggatac 308 |||||||||||||||||||| Sbjct: 2056151 ccaccaccagcaacggatac 2056170 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ccaccaccagcaacggatac 308 |||||||||||||||||||| Sbjct: 1296246 ccaccaccagcaacggatac 1296227 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 ccaccaccagcaacggatac 308 |||||||||||||||||||| Sbjct: 1287204 ccaccaccagcaacggatac 1287223 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ccaccaccagcaacggatac 308 |||||||||||||||||||| Sbjct: 548508 ccaccaccagcaacggatac 548489 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ccaccaccagcaacggatac 308 |||||||||||||||||||| Sbjct: 409221 ccaccaccagcaacggatac 409202 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 ccaccaccagcaacggatac 308 |||||||||||||||||||| Sbjct: 405055 ccaccaccagcaacggatac 405074 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ccaccaccagcaacggatac 308 |||||||||||||||||||| Sbjct: 270787 ccaccaccagcaacggatac 270768 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 cgccaccaccagcaacggat 306 |||||||||||||||||||| Sbjct: 138759 cgccaccaccagcaacggat 138740
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 cggcgacgagcgcgccaagg 186 |||||||||||||||||||| Sbjct: 5696626 cggcgacgagcgcgccaagg 5696645
>dbj|AK106957.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-E10, full insert sequence Length = 2049 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 acatcctcgccaccaccagc 299 |||||||||||||||||||| Sbjct: 200 acatcctcgccaccaccagc 219
>dbj|AK071609.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101N02, full insert sequence Length = 1156 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 acatcctcgccaccaccagc 299 |||||||||||||||||||| Sbjct: 201 acatcctcgccaccaccagc 220
>emb|CR936503.1| Lactobacillus sakei strain 23K complete genome Length = 1884661 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 tcgccaccaccagcaacggatacg 309 ||||||||||||||||||| |||| Sbjct: 443006 tcgccaccaccagcaacggctacg 443029
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 ggcggcgcgggccgcgctgg 36 |||||||||||||||||||| Sbjct: 1021308 ggcggcgcgggccgcgctgg 1021327
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 cggcgacgagcgcgccaagg 186 |||||||||||||||||||| Sbjct: 1771467 cggcgacgagcgcgccaagg 1771486 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,317,863 Number of Sequences: 3902068 Number of extensions: 2317863 Number of successful extensions: 76697 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74930 Number of HSP's gapped (non-prelim): 1765 length of query: 382 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 360 effective length of database: 17,147,199,772 effective search space: 6172991917920 effective search space used: 6172991917920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
