ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal20a14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK073785.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 9e-30
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 96 3e-17
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 96 3e-17
4gb|AC140006.1| Oryza sativa (japonica cultivar-group) chromosome... 96 3e-17
5gb|AC104474.2| Oryza sativa (japonica cultivar-group) chromosome... 96 3e-17
6gb|DQ417491.1| Chlamydomonas reinhardtii DP1 mRNA, complete cds 42 0.39
7gb|AY104697.1| Zea mays PCO073524 mRNA sequence 42 0.39
8gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 40 1.6
9gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 1.6
10gb|AY907537.1| Uncultured bacterial symbiont of Discodermia diss... 38 6.2
11dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
12dbj|AP006527.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
13dbj|AB078606.1| Phanerochaete sordida mnp3 gene for manganese pe... 38 6.2

>dbj|AK073785.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068D19, full
           insert sequence
          Length = 801

 Score =  137 bits (69), Expect = 9e-30
 Identities = 98/108 (90%)
 Strand = Plus / Plus

                                                                       
Query: 24  cctcaagggcgtcgcccttatcagcggcggtggcgccgacagcgctgtcgccggcgccct 83
           |||||||||||||||||| ||| ||||||  |||| | ||||||| ||||||||||||||
Sbjct: 17  cctcaagggcgtcgccctcatcggcggcgccggcggcaacagcgcggtcgccggcgccct 76

                                                           
Query: 84  ccacttcntccaagacccctcctccgggtataccgaggtgagggggag 131
           ||||||| |||| ||||||||| |||||||||||||||||||||||||
Sbjct: 77  ccacttcttccaggacccctccaccgggtataccgaggtgagggggag 124



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                           
Query: 24      cctcaagggcgtcgcccttatcagcggcggtggcgccgacagcgctgtcgccggcgccct 83
               |||||||||||||||||| ||| ||||||  |||| | ||||||| ||||||||||||||
Sbjct: 6243600 cctcaagggcgtcgccctcatcggcggcgccggcggcaacagcgcggtcgccggcgccct 6243541

                                          
Query: 84      ccacttcntccaagacccctcctccgg 110
               ||||||| |||| ||||||||| ||||
Sbjct: 6243540 ccacttcttccaggacccctccaccgg 6243514



 Score = 46.1 bits (23), Expect = 0.025
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 109     gggtataccgaggtgagggggag 131
               |||||||||||||||||||||||
Sbjct: 6243387 gggtataccgaggtgagggggag 6243365



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                           
Query: 24      cctcaagggcgtcgcccttatcagcggcggtggcgccgacagcgctgtcgccggcgccct 83
               |||||||||||||||||| ||| ||||||  |||| | ||||||| ||||||||||||||
Sbjct: 6242813 cctcaagggcgtcgccctcatcggcggcgccggcggcaacagcgcggtcgccggcgccct 6242754

                                          
Query: 84      ccacttcntccaagacccctcctccgg 110
               ||||||| |||| ||||||||| ||||
Sbjct: 6242753 ccacttcttccaggacccctccaccgg 6242727



 Score = 46.1 bits (23), Expect = 0.025
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 109     gggtataccgaggtgagggggag 131
               |||||||||||||||||||||||
Sbjct: 6242600 gggtataccgaggtgagggggag 6242578



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>gb|AC140006.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNAa0090D11, complete sequence
          Length = 115403

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                         
Query: 24    cctcaagggcgtcgcccttatcagcggcggtggcgccgacagcgctgtcgccggcgccct 83
             |||||||||||||||||| ||| ||||||  |||| | ||||||| ||||||||||||||
Sbjct: 82211 cctcaagggcgtcgccctcatcggcggcgccggcggcaacagcgcggtcgccggcgccct 82152

                                        
Query: 84    ccacttcntccaagacccctcctccgg 110
             ||||||| |||| ||||||||| ||||
Sbjct: 82151 ccacttcttccaggacccctccaccgg 82125



 Score = 46.1 bits (23), Expect = 0.025
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 109   gggtataccgaggtgagggggag 131
             |||||||||||||||||||||||
Sbjct: 81998 gggtataccgaggtgagggggag 81976



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>gb|AC104474.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0024O21, complete sequence
          Length = 155651

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                         
Query: 24    cctcaagggcgtcgcccttatcagcggcggtggcgccgacagcgctgtcgccggcgccct 83
             |||||||||||||||||| ||| ||||||  |||| | ||||||| ||||||||||||||
Sbjct: 56808 cctcaagggcgtcgccctcatcggcggcgccggcggcaacagcgcggtcgccggcgccct 56749

                                        
Query: 84    ccacttcntccaagacccctcctccgg 110
             ||||||| |||| ||||||||| ||||
Sbjct: 56748 ccacttcttccaggacccctccaccgg 56722



 Score = 46.1 bits (23), Expect = 0.025
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 109   gggtataccgaggtgagggggag 131
             |||||||||||||||||||||||
Sbjct: 56595 gggtataccgaggtgagggggag 56573



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>gb|DQ417491.1| Chlamydomonas reinhardtii DP1 mRNA, complete cds
          Length = 1707

 Score = 42.1 bits (21), Expect = 0.39
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 44   tcagcggcggtggcgccgacagcgc 68
            |||||||||||||||||| ||||||
Sbjct: 1645 tcagcggcggtggcgccgccagcgc 1621



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>gb|AY104697.1| Zea mays PCO073524 mRNA sequence
          Length = 595

 Score = 42.1 bits (21), Expect = 0.39
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 85  cacttcntccaagacccctcctccgggtataccgaggtgagggg 128
           |||||| || | ||||||||| || |||| ||||||||||||||
Sbjct: 114 cacttcttcgaggacccctccaccaggtacaccgaggtgagggg 157



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>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    agcggcggtggcgccgacag 65
             ||||||||||||||||||||
Sbjct: 29087 agcggcggtggcgccgacag 29106



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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 54      tggcgccgacagcgctgtcg 73
               ||||||||||||||||||||
Sbjct: 1437583 tggcgccgacagcgctgtcg 1437602



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>gb|AY907537.1| Uncultured bacterial symbiont of Discodermia dissoluta polyketide
             synthesis gene cluster, partial sequence
          Length = 124311

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 54    tggcgccgacagcgctgtcgccg 76
             |||||||||||||||| ||||||
Sbjct: 99394 tggcgccgacagcgctatcgccg 99372



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 36      cgcccttatcagcggcggtggcg 58
               |||||| ||||||||||||||||
Sbjct: 6036829 cgccctcatcagcggcggtggcg 6036807



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>dbj|AP006527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0603H10
          Length = 137828

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 36    cgcccttatcagcggcggtggcg 58
             |||||| ||||||||||||||||
Sbjct: 34403 cgccctcatcagcggcggtggcg 34381



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>dbj|AB078606.1| Phanerochaete sordida mnp3 gene for manganese peroxidase isoform 3,
            complete cds
          Length = 2979

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 45   cagcggcggtggcgccgac 63
            |||||||||||||||||||
Sbjct: 1401 cagcggcggtggcgccgac 1419


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 637,792
Number of Sequences: 3902068
Number of extensions: 637792
Number of successful extensions: 49238
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48990
Number of HSP's gapped (non-prelim): 248
length of query: 131
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 110
effective length of database: 17,151,101,840
effective search space: 1886621202400
effective search space used: 1886621202400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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